View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6853_high_8 (Length: 303)
Name: NF6853_high_8
Description: NF6853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6853_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 37 - 283
Target Start/End: Original strand, 18923659 - 18923905
Alignment:
| Q |
37 |
ccaagtccctcaatcttatctttagcttctcttctagcggctctcactctctcacatactcacaaacaccaaacacggtcgaatcagatctacatctcct |
136 |
Q |
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| T |
18923659 |
ccaagtccctcaatcttatctttagcttctcttctagcggctctcactctctcacatactcacaaacaccaaacacggtcgaatcagatctacatctcct |
18923758 |
T |
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| Q |
137 |
tgaatattttaaaagttaaaagcacggttaacaattttaatgttcatggcttcctcaagttcttcttccagcaccaacttattcgttgcggaccatcctg |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18923759 |
tgaatattttaaaagttaaaagcacggttaacaattttaatgttcatggcttcctcaagttcttcttccagcaccaacttattcgttgcggaccatcctg |
18923858 |
T |
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| Q |
237 |
tgggggttgaatctcgtgtgcaagaggttattcaactgctgaacacc |
283 |
Q |
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| T |
18923859 |
tgggggttgaatctcgtgtacaagaggttattcaactgctgaacacc |
18923905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 173 - 273
Target Start/End: Complemental strand, 34716154 - 34716054
Alignment:
| Q |
173 |
ttaatgttcatggcttcctcaagttcttcttccagcaccaacttattcgttgcggaccatcctgtgggggttgaatctcgtgtgcaagaggttattcaac |
272 |
Q |
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| T |
34716154 |
ttaattttcatggcttcctccagttctacttccagcaccaacttatttgttgcggaccatccagtgggggtggaatctcgtgtacaagaggttattcaac |
34716055 |
T |
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| Q |
273 |
t |
273 |
Q |
| |
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| |
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| T |
34716054 |
t |
34716054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 213 - 281
Target Start/End: Complemental strand, 34727985 - 34727917
Alignment:
| Q |
213 |
acttattcgttgcggaccatcctgtgggggttgaatctcgtgtgcaagaggttattcaactgctgaaca |
281 |
Q |
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| T |
34727985 |
acttattcgttgcagaccatccagtgggggtagattctcgtgttcaagatgttattcaactactgaaca |
34727917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 273
Target Start/End: Original strand, 18928743 - 18928801
Alignment:
| Q |
215 |
ttattcgttgcggaccatcctgtgggggttgaatctcgtgtgcaagaggttattcaact |
273 |
Q |
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| T |
18928743 |
ttattcgttgcagaccatccagtgggggtagattctcgtgttcaagatgttgttcaact |
18928801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 273
Target Start/End: Complemental strand, 34731135 - 34731083
Alignment:
| Q |
221 |
gttgcggaccatcctgtgggggttgaatctcgtgtgcaagaggttattcaact |
273 |
Q |
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| T |
34731135 |
gttgtggaccatccagtgggggtagattctcgtgttcaagatgttattcaact |
34731083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 53654986 - 53654958
Alignment:
| Q |
1 |
tacaatttgggacggagggagtaataaac |
29 |
Q |
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| T |
53654986 |
tacaatttgggacggagggagtaataaac |
53654958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 4226261 - 4226233
Alignment:
| Q |
1 |
tacaatttgggacggagggagtaataaac |
29 |
Q |
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| T |
4226261 |
tacaatttgggacggagggagtaataaac |
4226233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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