View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6853_low_1 (Length: 877)
Name: NF6853_low_1
Description: NF6853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6853_low_1 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 777; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 777; E-Value: 0
Query Start/End: Original strand, 1 - 877
Target Start/End: Complemental strand, 40766667 - 40765791
Alignment:
| Q |
1 |
ttgctgcccctaacaacgctgcatcagaatgcgcagaagacaacttcagtatgcgcatgacaacctacaattatcagcagaagactgcgcgccactccta |
100 |
Q |
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||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||| |||||||| |
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| T |
40766667 |
ttgctgcccctaacaacgctgcagcagaatgcatagaagacaacttcagtatgcgcatgacaacctacatgtatcagcagaaaactgtgcggcactccta |
40766568 |
T |
|
| Q |
101 |
aatagaaaccaggggaaaaaattgattgctaaacacctgcaatacactctatccacacttggtagaagtgcagtcacccaaatatggaccctccaataac |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
40766567 |
aatagaaaccagggaaaaaaattgattgctaaacacctacaatacactctatccacacttggtagaagtgcagtcacccaaatatggaccctccaacaac |
40766468 |
T |
|
| Q |
201 |
aactgcacagaccaccaaaccactttgaatatgaggagaaaaacagcagaacaacaaaatgtcacaacctagcaaaaacagagttaagatgcctccaatc |
300 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
40766467 |
aactgcacagaccaccaaaccactttgactatgaggagaaaaacagcagaacaacaaaatgtcacaacctagcaaaaacagagttaagatacctccaatc |
40766368 |
T |
|
| Q |
301 |
gagtattttatctcataatacactcttgtggattccaaaaccgttcatagtataggcacgtaggaattttgagcctagtcaaactccacctttttataag |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40766367 |
gagtattttatctcataatacactcttgtggattccaaaaccgttcatagtataggcacgtaggaattttgagcctagtcaaactccacctttttataag |
40766268 |
T |
|
| Q |
401 |
acttaatcctacagattcatacaaataattattcaaatatatggaattaaggtgatttttctttcaagtcacatataatgattttcatcactagttaaag |
500 |
Q |
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|||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
40766267 |
acttaatcctacagattcgtacatataattattcaaatatatagaattaaggtgatttttcttccaagtcacatataatgattttcatcactggttaaag |
40766168 |
T |
|
| Q |
501 |
tattttatcattgtttttctttgtgtacatttaatatcctccgtatgcaccgtccaaggggtgaattcttcaaatgcaacatatttaagcttgggttcga |
600 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
40766167 |
tattttatcattgtttttctttgtgtacatttaatatcctccgtatgcaccgtccgagggatgaattcttcaaatgcaacatatttaagcttgggttcga |
40766068 |
T |
|
| Q |
601 |
ataatcaatcttagttaagttagaatgagttcgaattcctccatttatccatcatctatttattctccatttacgcaagagatatacacatgtgaaagat |
700 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
40766067 |
ataatcaatcttagttaagttagaatgagttcaaattcctccatttatccatcatatatttattttccatttacgcaagagatatacacatgtgaaagat |
40765968 |
T |
|
| Q |
701 |
tcatgagatccataagtaaaatccacttattaaaataggttccactaatcttcacttgtgtccatctctcgcgtaaatgaacaataaataataatagata |
800 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
40765967 |
tcatgagatccataagtaaaatccacttattaaaataggttccactaatcttcacttgtgtccatctcgcgcgtaaatgaacaataaataaaaatagata |
40765868 |
T |
|
| Q |
801 |
aatggaggaatccaaattcacttaaaagagactcgttttatataatctaagcgcttttgatgatatttaatcatttt |
877 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40765867 |
aatggaggaatccaaattcacttaaaagagactcgttttatataatctaagcgcttttgatgatatttaatcatttt |
40765791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 722 - 770
Target Start/End: Complemental strand, 23746135 - 23746086
Alignment:
| Q |
722 |
tccacttattaaaataggttccactaatct-tcacttgtgtccatctctc |
770 |
Q |
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| T |
23746135 |
tccacttattaaaatgggtcccactaatctatcacttgtgtctatctctc |
23746086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 721 - 789
Target Start/End: Complemental strand, 8407646 - 8407578
Alignment:
| Q |
721 |
atccacttattaaaataggttccactaatcttcacttgtgtccatctctcgcgtaaatgaacaataaat |
789 |
Q |
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|||||||||||||||| ||| |||||||||| ||| ||||| |||||||| | |||||| ||||||||| |
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| T |
8407646 |
atccacttattaaaattggtcccactaatctccacatgtgtacatctctctcataaatggacaataaat |
8407578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 293 - 388
Target Start/End: Original strand, 37990507 - 37990602
Alignment:
| Q |
293 |
ctccaatcgagtattttatctcataatacactcttgtggattccaaaaccgttcatagtataggcacgtaggaattttgagcctagtcaaactcca |
388 |
Q |
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|||||||||||| | |||||||| |||||||| || | |||||| ||| ||||||||||||||||||| || |||||||| |||||||||| |
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| T |
37990507 |
ctccaatcgagtttcttatctcaaaatacactatttcaggttccaacaccagtcatagtataggcacgtagtgatactgagcctactcaaactcca |
37990602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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