View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6853_low_12 (Length: 348)

Name: NF6853_low_12
Description: NF6853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6853_low_12
NF6853_low_12
[»] chr4 (1 HSPs)
chr4 (38-330)||(43529530-43529822)


Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 38 - 330
Target Start/End: Complemental strand, 43529822 - 43529530
Alignment:
Q  38 tgcaatcccagcaatagctccactggaaagtgaagacgaagatgatcctcgcttaaacaccggtaaatttgtcgtgttcaactctttcaaactcccatca 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43529822 tgcaatcccagcaatagctccactggaaagtgaagacgaagatgatcctcgcttaaacaccggtaaatttgtcgtgttcaactctttcaaactcccatca 43529723  T
Q  138 tcactaaaactccatgctaaaactctctgcgcttcaatccaattcgttttcgaagctgaaaaaccaaagaacatttcaggagcaacataatgagctataa 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  43529722 tcactaaaactccatgctaaaactctctgcgcttcaatccaattcgttttcgaagctgaaaaaccaaagaacatttcaggagcaacataatgagctatac 43529623  T
Q  238 tcgaatcattataagatagcgtcggtttcaaaggcttcgaaacaccaaccggagcaacagtaacatttatctccaacctctcgccgtcaaatt 330  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43529622 tcgaatcattataagatagcgtcggtttcaaaggcttcgaaacaccaaccggagcaacagtaacatttatctccaacctctcgccgtcaaatt 43529530  T

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