View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6853_low_15 (Length: 252)
Name: NF6853_low_15
Description: NF6853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6853_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 18938394 - 18938160
Alignment:
| Q |
1 |
ccactttattgcaaccaaagaaaaaatgccattcattttcataagatccctcacaatgaacacatatccgtacattaaactaactcatatagtgcgaagt |
100 |
Q |
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| T |
18938394 |
ccactttattgcaaccaaagaaaaaatgccattcattttcataagatccctcacaactaacacatatccgtacatta----aactcaaatagtgcgaagt |
18938299 |
T |
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| Q |
101 |
atttcccttgtaggaaggcagccccttgcc-cacgccacaagaaaacttttannnnnnngagggattttgatgttccatattttcatccagttatcggga |
199 |
Q |
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| T |
18938298 |
atttcccttgtaggaaggcagccccttgccgcacgccacaagaaaacttttatttttttgagggattttaatgttccatattttcatccagttatcagga |
18938199 |
T |
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| Q |
200 |
actcataaatcactattatccaataaaatttccatgatgt |
239 |
Q |
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|||| |||||||||||||||| |||||||||||||||||| |
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| T |
18938198 |
actcgtaaatcactattatcc-ataaaatttccatgatgt |
18938160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 10369996 - 10370059
Alignment:
| Q |
1 |
ccactttattgcaaccaaagaaaaaatgccattcattttcataagatccctcacaatgaacaca |
64 |
Q |
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|||| |||||||| ||||| || | ||| || ||||||| |||||||||||||||||||||||| |
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| T |
10369996 |
ccaccttattgcatccaaataacacatggcaatcatttttataagatccctcacaatgaacaca |
10370059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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