View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6853_low_16 (Length: 250)
Name: NF6853_low_16
Description: NF6853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6853_low_16 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 25867177 - 25867415
Alignment:
| Q |
12 |
acatcagatagcatcaaatttaggagcaacttccgacgaatttcttgtgcatgatgtacttcgcgaagaaaaatggcatgttcattgactccttgaattc |
111 |
Q |
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| T |
25867177 |
acatcagatagcatcaaatttaggagcaacttccgacgaatttcctgtgcatgatgtacttcgcgaagaaaaatggcatgttcattgactccttgaattc |
25867276 |
T |
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| Q |
112 |
caaaagtagaaggatgtgatcctaatgcaattactagcttatcatatgagactgtaaatttccaaggttctattgtctgctctccatcagttacagtctc |
211 |
Q |
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| T |
25867277 |
caaaagtagaaggatgtgatcctagtgcaattactagcttatcatatgagactgtaaatttccaaggttctattgtctgctctccatcagttacagtctc |
25867376 |
T |
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| Q |
212 |
ccagtgcaccttcaaaacccaacatcaaatacaaatttt |
250 |
Q |
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| T |
25867377 |
acagtgcaccttcaaaaccaaacatcaaatacaaatttt |
25867415 |
T |
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Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 23 - 229
Target Start/End: Original strand, 30218661 - 30218867
Alignment:
| Q |
23 |
catcaaatttaggagcaacttccgacgaatttcttgtgcatgatgtacttcgcgaagaaaaatggcatgttcattgactccttgaattccaaaagtagaa |
122 |
Q |
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||||||||| ||||||||||| ||||| ||||| |||||||| | ||||| ||||||||||| |||||||||| ||||| |||||||||||||| | |
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| T |
30218661 |
catcaaattgaggagcaacttgcgacggatttcctgtgcatggtaaacttcacgaagaaaaattgcatgttcataaactccatgaattccaaaagtggtg |
30218760 |
T |
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| Q |
123 |
ggatgtgatcctaatgcaattactagcttatcatatgagactgtaaatttccaaggttctattgtctgctctccatcagttacagtctcccagtgcacct |
222 |
Q |
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| T |
30218761 |
ggttgtgctcctagtgcaattactaacttatcataggagattgtaaacttccaaggatccagtgtctgtgttccttcagttacagtctcacattgtacct |
30218860 |
T |
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| Q |
223 |
tcaaaac |
229 |
Q |
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||||||| |
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| T |
30218861 |
tcaaaac |
30218867 |
T |
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