View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6853_low_2 (Length: 628)
Name: NF6853_low_2
Description: NF6853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6853_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 582; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 21 - 614
Target Start/End: Original strand, 26981573 - 26982166
Alignment:
| Q |
21 |
ctagagaccgattgttatttcttcatttcaattgttattgcctctagtttagagatctatataactcatatatgtcagctaacatgtgaattctactaac |
120 |
Q |
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| T |
26981573 |
ctagagaccgattgttatttcttcatttcaattgttattgcctctagtttagagatctatataactcatatatgtcagctaacatgtgaattctactaac |
26981672 |
T |
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| Q |
121 |
atgtcactcaactttaatgctgagaaaaatcaagcagagttcttaagcagcgaatagaggcttccttaaaatttatactgttaagagaaattgattggac |
220 |
Q |
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| T |
26981673 |
atgtcactcaactttaatgctgagaaaaatcaagcagagttcttaagcagcgaatagaggcttccttaaaatttatactgttaagagaaattgattggac |
26981772 |
T |
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| Q |
221 |
ttcaatttctttgacatgatcataattttattaactataatagttaggtaattggttaaaatgattgaggtataagcatatcttggcgataaccaattcc |
320 |
Q |
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| T |
26981773 |
ttcaatttctttgacatgatcataattttattaactataatagttaggtaattggttaaaatgattgaggtataagcatatcttggcgataaccaattcc |
26981872 |
T |
|
| Q |
321 |
atcattaactttatggatctgcatttgcatgaatttatgaacgaactattgagatacttttatataataaaccagtaacactaaagaattaaggactcaa |
420 |
Q |
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| T |
26981873 |
atcattaactttatggatctgcatttgcatgaatttatgaacgaactattgagatacttttatataataaaccagtaacactaaagaattaaggactcaa |
26981972 |
T |
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| Q |
421 |
attcagattaaagtcaaagcttataagaaactatgcatgttattgtactgcaatgtgacttgtacaaaatgaacaaggaacatacgaaatctgaaaactt |
520 |
Q |
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| T |
26981973 |
attcagattaaagtcaaagcttataagaaactatgcatgttattgtactgcaatgtgacttgtacaaaatgaacaaggaacatacgaaatatgaaaactt |
26982072 |
T |
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| Q |
521 |
tcgtgtaccttccattttctagctgaaccaaagctctcactcctactggccgccagatagccacaaccaacgaagccatcaataccaacacagg |
614 |
Q |
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| T |
26982073 |
tcgtgtaccttccattttctagctgaaccaaagctctcactcctactggccgccagatagccacaaccgacgaagccatcaataccaatacagg |
26982166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 120 - 166
Target Start/End: Complemental strand, 7348439 - 7348393
Alignment:
| Q |
120 |
catgtcactcaactttaatgctgagaaaaatcaagcagagttcttaa |
166 |
Q |
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| T |
7348439 |
catgtcactcaacttcaatgttgggaaaaatcaagcagtgttcttaa |
7348393 |
T |
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