View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6853_low_3 (Length: 598)
Name: NF6853_low_3
Description: NF6853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6853_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 532; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 1 - 588
Target Start/End: Original strand, 11311321 - 11311908
Alignment:
| Q |
1 |
aaaggaagcctgtttattaaataaacagctgttagaaaaacttcaacccacaaaggtaatggaatatttgcatgaaacatcattgttaacccaatctcga |
100 |
Q |
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| T |
11311321 |
aaaggaagcctgtttattaaataaacagctgttagaaaaacttcaacccacaaaggtaatggaatatttgcatgaaacatcatggttaacccaatctcga |
11311420 |
T |
|
| Q |
101 |
caatgtgacgatgttttcgttctgttgtgccattttgttccggggtccctggacatgaaacatgaagttcaatgccgcaagtatgtagatgatttagaaa |
200 |
Q |
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| T |
11311421 |
caatgtgacgatgctttcgttcttccgtaccattttgttccggggtccctggacatgaaacatgaagttcaatgccgcaagtatgtagatgatttagaaa |
11311520 |
T |
|
| Q |
201 |
agaatttgagttaaactctcctccgccatcacactgaaaaatcttgatctttctatcaagttgattttctacaagtttttgaaaccttaaaaagcactcc |
300 |
Q |
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| T |
11311521 |
agaatttgagttaaactctcctccgccatcacactgaaaaatcttgatctttctatcaagttgattttctacaagtttttgaaaccttaaaaagcactcc |
11311620 |
T |
|
| Q |
301 |
aaaaatccagactttttctttaaagggtaaatccacgagaaccgtgaataatcatctataaaaagggcataatatcgaaagttttgattagaggttgtag |
400 |
Q |
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| T |
11311621 |
aaaaatccagacattttctttaaagggtaaatccacgagaaccgtgaatagtcatctataaaaagtgcataatatcgaaagttttgattagaggttgtag |
11311720 |
T |
|
| Q |
401 |
gtgcagaaccccaaagatcacaatggattttatcaagaggaaattctgaaattttattagaactttggaatggcaatttacaattttttcccatttgaca |
500 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
11311721 |
gtgcaggaccccaaagatcacaatggattttatcaagaggagattctgaaattttattagaactttggaatggcaatttacaactttttcccatttgaca |
11311820 |
T |
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| Q |
501 |
actaacacaaacaacaagttttgatacccattgtgttacattgattttgtctttcaacaaagataatatcttgaaattttgatgtcca |
588 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
11311821 |
actaacacaaacaacaggttttgatacccattgtgttacattgattttgtctttcaacaaagataatatcttgaaatttggatgtcca |
11311908 |
T |
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