View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6853_low_4 (Length: 474)

Name: NF6853_low_4
Description: NF6853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6853_low_4
NF6853_low_4
[»] chr1 (23 HSPs)
chr1 (227-472)||(48033200-48033448)
chr1 (15-190)||(48032999-48033174)
chr1 (115-190)||(5126500-5126575)
chr1 (117-191)||(48034709-48034783)
chr1 (117-190)||(48035756-48035829)
chr1 (117-190)||(48055941-48056014)
chr1 (118-190)||(48041323-48041395)
chr1 (118-190)||(48050608-48050680)
chr1 (117-190)||(29812825-29812898)
chr1 (117-190)||(48040171-48040244)
chr1 (117-190)||(48042833-48042906)
chr1 (118-190)||(48049406-48049478)
chr1 (123-190)||(48036725-48036792)
chr1 (117-190)||(48053125-48053198)
chr1 (119-191)||(48042225-48042297)
chr1 (119-190)||(39972786-39972857)
chr1 (122-191)||(48050016-48050085)
chr1 (117-190)||(48054677-48054750)
chr1 (118-190)||(22908323-22908395)
chr1 (117-177)||(29813662-29813722)
chr1 (117-190)||(48048640-48048714)
chr1 (129-188)||(48054322-48054381)
chr1 (383-423)||(48097983-48098023)
[»] chr2 (7 HSPs)
chr2 (107-190)||(6796485-6796568)
chr2 (108-191)||(7181553-7181636)
chr2 (119-191)||(13326995-13327067)
chr2 (118-190)||(35926125-35926197)
chr2 (119-190)||(6801054-6801125)
chr2 (119-190)||(39990580-39990651)
chr2 (118-190)||(35920134-35920206)
[»] chr3 (7 HSPs)
chr3 (115-191)||(47565676-47565752)
chr3 (113-190)||(34974797-34974874)
chr3 (119-191)||(53682982-53683054)
chr3 (118-190)||(31125752-31125824)
chr3 (119-191)||(38930470-38930542)
chr3 (119-190)||(53107639-53107710)
chr3 (128-165)||(32170503-32170540)
[»] chr4 (3 HSPs)
chr4 (117-191)||(49152534-49152608)
chr4 (119-190)||(38393563-38393634)
chr4 (124-180)||(26929299-26929355)
[»] chr6 (6 HSPs)
chr6 (114-190)||(992442-992518)
chr6 (118-190)||(10754597-10754669)
chr6 (118-190)||(10750280-10750352)
chr6 (118-173)||(32678635-32678690)
chr6 (119-191)||(18613088-18613160)
chr6 (118-190)||(10748684-10748756)
[»] chr7 (4 HSPs)
chr7 (119-191)||(23780469-23780541)
chr7 (119-190)||(43920607-43920678)
chr7 (119-191)||(40706106-40706178)
chr7 (124-180)||(46064798-46064854)


Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 227 - 472
Target Start/End: Original strand, 48033200 - 48033448
Alignment:
Q  227 acaaactaaaactctcaattttgtgtatgttt----acatgtgtgtgagtttaatttattgaaacggtaacgttcgcaaaaaattgcggcgattcaaagt 322  Q
    ||||||||||||||||||||||||||||||||    |||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  48033200 acaaactaaaactctcaattttgtgtatgtttgtttacatgtgtgtgaatttaatttattgaaacggtagcgttcgcaaaa-attgcggcgattcaaagt 48033298  T
Q  323 tcaaaccatactcaccatgaatccaaacaacttttgatttctcaatgttttatcaggtaattcatcttctccaattccattcccttactaaattcttctt 422  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  48033299 tcaaaccatcctcaccatgaatccaaacaacttttgatttgtcaatgttttatcaggtaattcatcttctccaattccattcccttactatattcttctt 48033398  T
Q  423 ccttaacttcactttttcacttcacagtcacatgcatgcatcttccattg 472  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48033399 ccttaacttcactttttcacttcacagtcacatgcatgcatcttccattg 48033448  T

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Target: chr1; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 48032999 - 48033174
Alignment:
Q  15 catcagtgattagaagtggtgacaatacgaggtgaaagcttcannnnnnnncccattaagtaatcattaagtaacataattacaaacggaagcatatcac 114  Q
    ||||||||||||||||||||||||||||||||||||| |||||        |||||||||||||| | |||||||||||||||||| |||||||||||||    
T  48032999 catcagtgattagaagtggtgacaatacgaggtgaaaacttcattttttttcccattaagtaatcgtgaagtaacataattacaaatggaagcatatcac 48033098  T
Q  115 aacagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 190  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48033099 cacagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 48033174  T

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Target: chr1; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 115 - 190
Target Start/End: Original strand, 5126500 - 5126575
Alignment:
Q  115 aacagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5126500 aacagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 5126575  T

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Target: chr1; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 117 - 191
Target Start/End: Original strand, 48034709 - 48034783
Alignment:
Q  117 cagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccca 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48034709 cagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccca 48034783  T

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Target: chr1; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 48035756 - 48035829
Alignment:
Q  117 cagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48035756 cagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 48035829  T

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Target: chr1; HSP #6
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 48055941 - 48056014
Alignment:
Q  117 cagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48055941 cagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 48056014  T

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Target: chr1; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 118 - 190
Target Start/End: Original strand, 48041323 - 48041395
Alignment:
Q  118 agggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48041323 agggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 48041395  T

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Target: chr1; HSP #8
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 118 - 190
Target Start/End: Original strand, 48050608 - 48050680
Alignment:
Q  118 agggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48050608 agggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 48050680  T

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Target: chr1; HSP #9
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 117 - 190
Target Start/End: Complemental strand, 29812898 - 29812825
Alignment:
Q  117 cagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  29812898 cagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccc 29812825  T

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Target: chr1; HSP #10
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 48040171 - 48040244
Alignment:
Q  117 cagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  48040171 cagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccc 48040244  T

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Target: chr1; HSP #11
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 48042833 - 48042906
Alignment:
Q  117 cagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  48042833 cagggcatttggtctagtggtatgattctcgctttgggtgcgagaggcccggagttcgattctctgaatgcccc 48042906  T

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Target: chr1; HSP #12
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 118 - 190
Target Start/End: Original strand, 48049406 - 48049478
Alignment:
Q  118 agggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  48049406 agggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccc 48049478  T

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Target: chr1; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 123 - 190
Target Start/End: Original strand, 48036725 - 48036792
Alignment:
Q  123 atttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 190  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  48036725 atttggtctagtggtatgattctcgctttgggtgccagaggtccggagtttgattctccgaatgcccc 48036792  T

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Target: chr1; HSP #14
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 48053125 - 48053198
Alignment:
Q  117 cagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 190  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||| |||||||||    
T  48053125 cagggcatttggtctagtggtataattctcgctttgggtgcgagaggtcccgagttcaattctcggaatgcccc 48053198  T

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Target: chr1; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 119 - 191
Target Start/End: Original strand, 48042225 - 48042297
Alignment:
Q  119 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccca 191  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||| ||||||||||    
T  48042225 gggcatttggtctagtggtatgattctcgcttcgggtgcgagaggttccgagttcgattctcggaatgcccca 48042297  T

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Target: chr1; HSP #16
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 119 - 190
Target Start/End: Complemental strand, 39972857 - 39972786
Alignment:
Q  119 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 190  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||| |||||||||    
T  39972857 gggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcggaatgcccc 39972786  T

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Target: chr1; HSP #17
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 122 - 191
Target Start/End: Original strand, 48050016 - 48050085
Alignment:
Q  122 catttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccca 191  Q
    ||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||| ||||||||||    
T  48050016 catttggtctagtggtatgattctcgctttgggtgtgagaggttccgagttcgattctcggaatgcccca 48050085  T

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Target: chr1; HSP #18
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 48054677 - 48054750
Alignment:
Q  117 cagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 190  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| |||||| |||||||||    
T  48054677 cagggcatttggtctagaggtatgattctcgctttgggtgcgagaggttccgagttcaattctcggaatgcccc 48054750  T

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Target: chr1; HSP #19
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 118 - 190
Target Start/End: Original strand, 22908323 - 22908395
Alignment:
Q  118 agggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 190  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||  |||||| |||||| |||||||||    
T  22908323 agggcatttggtctagtggtatgattctcgcttagggtgcgagaggtctcgagttcaattctcggaatgcccc 22908395  T

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Target: chr1; HSP #20
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 29813722 - 29813662
Alignment:
Q  117 cagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgatt 177  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  29813722 cagggcatttggtctagtggtttgattctcgctttgggtgcgagaggtcctgagttcgatt 29813662  T

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Target: chr1; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 48048640 - 48048714
Alignment:
Q  117 cagggcatttggtc-tagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 190  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||||||  |||| ||||||| |||||||||    
T  48048640 cagggcatttggtcctagtggtatcattctcgctttgggtgcgagaggtcccaagtttgattctcggaatgcccc 48048714  T

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Target: chr1; HSP #22
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 129 - 188
Target Start/End: Original strand, 48054322 - 48054381
Alignment:
Q  129 tctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcc 188  Q
    |||||||  ||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  48054322 tctagtgaaatgattctcgctttgggtgcgagaggtcctgagttcgattctcagaatgcc 48054381  T

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Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 383 - 423
Target Start/End: Original strand, 48097983 - 48098023
Alignment:
Q  383 ttcatcttctccaattccattcccttactaaattcttcttc 423  Q
    ||||||||||||||||||||||||| ||  |||||||||||    
T  48097983 ttcatcttctccaattccattccctcacataattcttcttc 48098023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 107 - 190
Target Start/End: Original strand, 6796485 - 6796568
Alignment:
Q  107 catatcacaacagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 190  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6796485 catatcacaaaagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 6796568  T

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Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 108 - 191
Target Start/End: Original strand, 7181553 - 7181636
Alignment:
Q  108 atatcacaacagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccca 191  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7181553 atatcacaaaagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccca 7181636  T

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Target: chr2; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 119 - 191
Target Start/End: Complemental strand, 13327067 - 13326995
Alignment:
Q  119 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccca 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13327067 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccca 13326995  T

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Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 118 - 190
Target Start/End: Complemental strand, 35926197 - 35926125
Alignment:
Q  118 agggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 190  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||| |||||||||    
T  35926197 agggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcggaatgcccc 35926125  T

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Target: chr2; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 119 - 190
Target Start/End: Complemental strand, 6801125 - 6801054
Alignment:
Q  119 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 190  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||| |||||||||    
T  6801125 gggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcggaatgcccc 6801054  T

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Target: chr2; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 39990580 - 39990651
Alignment:
Q  119 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 190  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||| |||||||||    
T  39990580 gggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcggaatgcccc 39990651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 118 - 190
Target Start/End: Complemental strand, 35920206 - 35920134
Alignment:
Q  118 agggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 190  Q
    ||||||| |||||||||||||||||||| |||| |||||||||||||||  ||||| |||||| |||||||||    
T  35920206 agggcatctggtctagtggtatgattcttgcttagggtgcgagaggtcccaagttcaattctcggaatgcccc 35920134  T

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Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 115 - 191
Target Start/End: Complemental strand, 47565752 - 47565676
Alignment:
Q  115 aacagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccca 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47565752 aacagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccca 47565676  T

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Target: chr3; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 113 - 190
Target Start/End: Original strand, 34974797 - 34974874
Alignment:
Q  113 acaacagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 190  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34974797 acaaccgggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 34974874  T

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Target: chr3; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 119 - 191
Target Start/End: Original strand, 53682982 - 53683054
Alignment:
Q  119 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccca 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53682982 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccca 53683054  T

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Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 118 - 190
Target Start/End: Original strand, 31125752 - 31125824
Alignment:
Q  118 agggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 190  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||| |||||||||    
T  31125752 agggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcggaatgcccc 31125824  T

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Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 119 - 191
Target Start/End: Complemental strand, 38930542 - 38930470
Alignment:
Q  119 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccca 191  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||| ||||||||||    
T  38930542 gggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcggaatgcccca 38930470  T

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Target: chr3; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 53107639 - 53107710
Alignment:
Q  119 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 190  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||| |||||||||    
T  53107639 gggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcggaatgcccc 53107710  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 165
Target Start/End: Original strand, 32170503 - 32170540
Alignment:
Q  128 gtctagtggtatgattctcgctttgggtgcgagaggtc 165  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  32170503 gtctagtggtatgattctagcttggggtgcgagaggtc 32170540  T

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Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 117 - 191
Target Start/End: Complemental strand, 49152608 - 49152534
Alignment:
Q  117 cagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccca 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49152608 cagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccca 49152534  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 119 - 190
Target Start/End: Complemental strand, 38393634 - 38393563
Alignment:
Q  119 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 190  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||| |||||||||    
T  38393634 gggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcggaatgcccc 38393563  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 26929355 - 26929299
Alignment:
Q  124 tttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctc 180  Q
    ||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||    
T  26929355 tttggtctagtggtatgattctcgcttcgggtgcgagaggtcgtgagttcgattctc 26929299  T

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Target: chr6 (Bit Score: 73; Significance: 4e-33; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 114 - 190
Target Start/End: Complemental strand, 992518 - 992442
Alignment:
Q  114 caacagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 190  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  992518 caactgggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 992442  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 118 - 190
Target Start/End: Complemental strand, 10754669 - 10754597
Alignment:
Q  118 agggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 190  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||| |||||||||    
T  10754669 agggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcggaatgcccc 10754597  T

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Target: chr6; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 118 - 190
Target Start/End: Complemental strand, 10750352 - 10750280
Alignment:
Q  118 agggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 190  Q
    |||||||||| |||||||||||||||||||||| |||||| |||||||| |||||| |||||| |||||||||    
T  10750352 agggcatttgatctagtggtatgattctcgcttagggtgcaagaggtcccgagttcaattctcggaatgcccc 10750280  T

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Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 118 - 173
Target Start/End: Complemental strand, 32678690 - 32678635
Alignment:
Q  118 agggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttc 173  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  32678690 agggcatttggtctagtggtatgattctcgctttgggtgtgagaggtcctgagttc 32678635  T

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Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 119 - 191
Target Start/End: Original strand, 18613088 - 18613160
Alignment:
Q  119 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccca 191  Q
    ||||||||| ||||||||||||||||| |||| ||||||||||||||| |||||  |||||| ||||||||||    
T  18613088 gggcatttgatctagtggtatgattcttgcttagggtgcgagaggtcccgagtttaattctcggaatgcccca 18613160  T

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Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 118 - 190
Target Start/End: Complemental strand, 10748756 - 10748684
Alignment:
Q  118 agggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 190  Q
    |||||||||||||||||| ||||||||||| || ||||| ||||||||  ||| || |||||| |||||||||    
T  10748756 agggcatttggtctagtgatatgattctcgtttagggtgtgagaggtctcgagctcaattctcggaatgcccc 10748684  T

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Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 119 - 191
Target Start/End: Original strand, 23780469 - 23780541
Alignment:
Q  119 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccca 191  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||| ||||||||||    
T  23780469 gggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcggaatgcccca 23780541  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 43920607 - 43920678
Alignment:
Q  119 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 190  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||| |||||||||    
T  43920607 gggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcggaatgcccc 43920678  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 119 - 191
Target Start/End: Original strand, 40706106 - 40706178
Alignment:
Q  119 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccca 191  Q
    |||||||||||||||| |||||||||||||||  |||||||||||||| |||||| |||||| ||||||||||    
T  40706106 gggcatttggtctagttgtatgattctcgcttaaggtgcgagaggtcccgagttcaattctcggaatgcccca 40706178  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 46064854 - 46064798
Alignment:
Q  124 tttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctc 180  Q
    ||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||    
T  46064854 tttggtctagtggtatgattctcgcttcgggtgcgagaggtcgtgagttcgattctc 46064798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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