View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6853_low_5 (Length: 451)
Name: NF6853_low_5
Description: NF6853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6853_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 20 - 440
Target Start/End: Original strand, 45724555 - 45724976
Alignment:
| Q |
20 |
cttctcaccagaggccaaaccgttattcttatccatgtttctcatgctctttcttccagtaataattcattcattcattcatttttaatcnnnnnnnnn- |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45724555 |
cttctcaccagaggccaaaccgttattcttatccatgtttctcatgctctttcttccagtaataattcattcattcattcatttttaatctttttttttt |
45724654 |
T |
|
| Q |
119 |
cttcatttatttataattttaagaagaatgcatttccaccaaattgcaggaggtagcgagggcgcgattgtatgtaacgctgccaacagtacttcttcag |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45724655 |
cttcatttatttataattttaagaagaatgcattttccccaaattgcaggaggtagcgagggcgcgattgtatgtaacgctgccaacagtacttcttcag |
45724754 |
T |
|
| Q |
219 |
ctgcatcatctccacagagacacctaattgataatgttgccaaagatctctttgttactttccattgctattgtagacgcaaagatgtatgtatgtagct |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45724755 |
ctgcatcatctccacagagacacctaattgataatgttgccaaggatctctttgttactttccattgctattgtagacgcaaagatgtatgtatgtagct |
45724854 |
T |
|
| Q |
319 |
ctcatcaatcccttgattaattcatataatgtacaactattttgtcaacaacatgcattgtcattcattgattaattaattggttgcttatatattttgt |
418 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
45724855 |
ctcatcaatcccttgattaattcatattatgtacaactattttgtcaacaacatacattgtcattcattgattaattaattgattgcttatatattttgt |
45724954 |
T |
|
| Q |
419 |
tagatacaatgccttgatgtcc |
440 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
45724955 |
tagatacaatgccttgatgtcc |
45724976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University