View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6853_low_6 (Length: 393)

Name: NF6853_low_6
Description: NF6853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6853_low_6
NF6853_low_6
[»] chr5 (3 HSPs)
chr5 (28-375)||(26380272-26380616)
chr5 (20-77)||(36429845-36429902)
chr5 (18-77)||(5348274-5348333)
[»] scaffold0102 (1 HSPs)
scaffold0102 (20-77)||(32915-32972)
[»] chr7 (1 HSPs)
chr7 (20-77)||(36067878-36067935)
[»] chr6 (4 HSPs)
chr6 (20-77)||(6008940-6008997)
chr6 (20-77)||(30710056-30710113)
chr6 (20-77)||(17732321-17732378)
chr6 (18-77)||(15347983-15348042)
[»] chr4 (2 HSPs)
chr4 (20-77)||(27455483-27455540)
chr4 (20-49)||(49681590-49681619)
[»] chr3 (3 HSPs)
chr3 (20-77)||(47471256-47471313)
chr3 (20-77)||(50837763-50837820)
chr3 (18-77)||(54560584-54560643)
[»] chr2 (2 HSPs)
chr2 (20-77)||(10256260-10256317)
chr2 (18-77)||(4593170-4593229)
[»] chr1 (1 HSPs)
chr1 (20-74)||(47445290-47445344)
[»] chr8 (2 HSPs)
chr8 (18-77)||(14791228-14791287)
chr8 (31-77)||(20111794-20111840)


Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 28 - 375
Target Start/End: Original strand, 26380272 - 26380616
Alignment:
Q  28 atcatcatcatcaattgtctcttgatctttctgcaatgacccttttggatgaagatcatcatcaacaacattctcaacctagcaacgttgttaacaacat 127  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26380272 atcatcatcatcaattgtctcttgatctctctgcaatgacccttttggatgaagatcatcatcaacaacattctcaacctagcaacgttgttaacaacat 26380371  T
Q  128 gtccagaatcagaggtaataatagtaataacaatcttgttgaatcattcactaacatgcctcgtttttgggaatctcatgcatacaacaacaacaataac 227  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||      |||||||||||    
T  26380372 gtccagaatcagaggtaataatagtaataacaatcttgttgaaccattcactaacatgccttgtttttgggaatctcatgcat------acaacaataac 26380465  T
Q  228 aacgttgttgatgatgaaacagtaacagtaacacacccacgttaccaaaacatg---ggtggtggtggtagtccaaaagcctcaacttttggggtttcac 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||    
T  26380466 aacgttgttgatgatgaaacagtaacagtaacacacccacgttaccaaaacatgggtggtggtggtggtagtccaaaagcctcaacttttggggtttcac 26380565  T
Q  325 aaaatccacaaggtttagtttctgaaaatatcaagtggggtatgcaaaaag 375  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26380566 aaaatccacaaggtttagtttctgaaaatatcaagtggggtatgcaaaaag 26380616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 36429845 - 36429902
Alignment:
Q  20 caacaatgatcatcatcatcaattgtctcttgatctttctgcaatgacccttttggat 77  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  36429845 caacaatgatcatcatcatcaattgtctcttgatctttctgctacgacccttttggat 36429902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 5348274 - 5348333
Alignment:
Q  18 atcaacaatgatcatcatcatcaattgtctcttgatctttctgcaatgacccttttggat 77  Q
    ||||||||  || ||||||||||||||||||||||||||||||| | |||||||||||||    
T  5348274 atcaacaacaatgatcatcatcaattgtctcttgatctttctgctacgacccttttggat 5348333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 32915 - 32972
Alignment:
Q  20 caacaatgatcatcatcatcaattgtctcttgatctttctgcaatgacccttttggat 77  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  32915 caacaatgatcatcatcatcaattgtctcttgatctttctgctacgacccttttggat 32972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 36067878 - 36067935
Alignment:
Q  20 caacaatgatcatcatcatcaattgtctcttgatctttctgcaatgacccttttggat 77  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  36067878 caacaatgatcatcatcatcaattgtctcttgatctttctgctacgacccttttggat 36067935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 6008997 - 6008940
Alignment:
Q  20 caacaatgatcatcatcatcaattgtctcttgatctttctgcaatgacccttttggat 77  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  6008997 caacaatgatcatcatcatcaattgtctcttgatctttctgctacgacccttttggat 6008940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 30710056 - 30710113
Alignment:
Q  20 caacaatgatcatcatcatcaattgtctcttgatctttctgcaatgacccttttggat 77  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  30710056 caacaatgatcatcatcatcaattgtctcttgatctttctgctacgacccttttggat 30710113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 17732378 - 17732321
Alignment:
Q  20 caacaatgatcatcatcatcaattgtctcttgatctttctgcaatgacccttttggat 77  Q
    ||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  17732378 caacactgatcatcatcatcaattgtctcttgatctttctgctacgacccttttggat 17732321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 15347983 - 15348042
Alignment:
Q  18 atcaacaatgatcatcatcatcaattgtctcttgatctttctgcaatgacccttttggat 77  Q
    ||||||||  || ||||||||||||||||||||||||||||||| | |||||||||||||    
T  15347983 atcaacaacaatgatcatcatcaattgtctcttgatctttctgctacgacccttttggat 15348042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 27455483 - 27455540
Alignment:
Q  20 caacaatgatcatcatcatcaattgtctcttgatctttctgcaatgacccttttggat 77  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  27455483 caacaatgatcatcatcatcaattgtctcttgatctttctgctacgacccttttggat 27455540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 49681619 - 49681590
Alignment:
Q  20 caacaatgatcatcatcatcaattgtctct 49  Q
    ||||||||||||||||||||||||||||||    
T  49681619 caacaatgatcatcatcatcaattgtctct 49681590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 47471256 - 47471313
Alignment:
Q  20 caacaatgatcatcatcatcaattgtctcttgatctttctgcaatgacccttttggat 77  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  47471256 caacaatgatcatcatcatcaattgtctcttgatctttctgctacgacccttttggat 47471313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 50837820 - 50837763
Alignment:
Q  20 caacaatgatcatcatcatcaattgtctcttgatctttctgcaatgacccttttggat 77  Q
    ||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  50837820 caacactgatcatcatcatcaattgtctcttgatctttctgctacgacccttttggat 50837763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 54560584 - 54560643
Alignment:
Q  18 atcaacaatgatcatcatcatcaattgtctcttgatctttctgcaatgacccttttggat 77  Q
    ||||||||  || ||||||||||||||||||||||||||||||| | |||||||||||||    
T  54560584 atcaacaacaatgatcatcatcaattgtctcttgatctttctgctacgacccttttggat 54560643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 10256260 - 10256317
Alignment:
Q  20 caacaatgatcatcatcatcaattgtctcttgatctttctgcaatgacccttttggat 77  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  10256260 caacaatgatcatcatcatcaattgtctcttgatctttctgctacgacccttttggat 10256317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 4593170 - 4593229
Alignment:
Q  18 atcaacaatgatcatcatcatcaattgtctcttgatctttctgcaatgacccttttggat 77  Q
    ||||||||  || ||||||||||||||||||||||||||||||| | |||||||||||||    
T  4593170 atcaacaacaatgatcatcatcaattgtctcttgatctttctgctacgacccttttggat 4593229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 47445344 - 47445290
Alignment:
Q  20 caacaatgatcatcatcatcaattgtctcttgatctttctgcaatgacccttttg 74  Q
    ||||||||||||||||||| |||||||||||||||||||||| | ||||||||||    
T  47445344 caacaatgatcatcatcataaattgtctcttgatctttctgctacgacccttttg 47445290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 14791228 - 14791287
Alignment:
Q  18 atcaacaatgatcatcatcatcaattgtctcttgatctttctgcaatgacccttttggat 77  Q
    ||||||||  || ||||||||||||||||||||||||||||||| | |||||||||||||    
T  14791228 atcaacaacaatgatcatcatcaattgtctcttgatctttctgctacgacccttttggat 14791287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 20111840 - 20111794
Alignment:
Q  31 atcatcatcaattgtctcttgatctttctgcaatgacccttttggat 77  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||    
T  20111840 atcatcatcaattgtctcttgatctttctgccacgacccttttggat 20111794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University