View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6853_low_8 (Length: 386)

Name: NF6853_low_8
Description: NF6853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6853_low_8
NF6853_low_8
[»] chr8 (3 HSPs)
chr8 (1-378)||(16470748-16471125)
chr8 (1-378)||(16475319-16475696)
chr8 (3-60)||(42934795-42934852)
[»] chr2 (1 HSPs)
chr2 (1-378)||(9359112-9359497)
[»] chr1 (4 HSPs)
chr1 (131-347)||(45235105-45235324)
chr1 (1-131)||(45234716-45234846)
chr1 (167-253)||(49195173-49195260)
chr1 (340-378)||(45235464-45235502)
[»] chr3 (2 HSPs)
chr3 (167-253)||(33366198-33366285)
chr3 (1-60)||(42580614-42580673)
[»] chr4 (1 HSPs)
chr4 (167-253)||(31525217-31525304)


Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 16471125 - 16470748
Alignment:
Q  1 cctaatcccaaattaattgctaagctaaactgccaaccacccaagtaaatctcaatcgtttttaagaggacgtttcattttccctcccaagcttgcatta 100  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  16471125 cctaatcccatattaattgctaagctaaactaccaaccacccaagtaaatctcaaccgttgttaagaggacgtttcattttccctcccaagcttgcatta 16471026  T
Q  101 atttcagtcattcctgccaactacccactgatccattaaacatttaatgtggccttccatatctctccatgcagcaggtgaatttgtattccacgagaag 200  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||     
T  16471025 atttcagtcattcctcccaactacccactgatccattaaacatttaatgtggccttccatatctctccatgcagcaagtgaatttgtattccacgagaat 16470926  T
Q  201 tctctccaactccccaattcattgtgtacacatgtcaccatgattcaaattcatttttgtccatgagcccggtataaatagtggcgcacatacatttgtg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  16470925 tctctccaactccccaattcattgtgtacacatgtcaccatgattcaaattcatttttgtctatgaacccggtataaatagtggcgcacatacatttgtg 16470826  T
Q  301 gtacaattaatcttaatggatttccataaaatttctgtttaatcaatctaatcatgtttcattgaatatattttgttc 378  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  16470825 gtacaattaatcttaatggatttccataaaatttatgtttaatcaatctaatcatgtttcattgaatatatttagttc 16470748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 16475696 - 16475319
Alignment:
Q  1 cctaatcccaaattaattgctaagctaaactgccaaccacccaagtaaatctcaatcgtttttaagaggacgtttcattttccctcccaagcttgcatta 100  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  16475696 cctaatcccatattaattgctaagctaaactaccaaccacccaagtaaatctcaaccgttgttaagaggacgtttcattttccctcccaagcttgcatta 16475597  T
Q  101 atttcagtcattcctgccaactacccactgatccattaaacatttaatgtggccttccatatctctccatgcagcaggtgaatttgtattccacgagaag 200  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||     
T  16475596 atttcagtcattcctcccaactacccactgatccattaaacatttaatgtggccttccatatctctccatgcagcaagtgaatttgtattccacgagaat 16475497  T
Q  201 tctctccaactccccaattcattgtgtacacatgtcaccatgattcaaattcatttttgtccatgagcccggtataaatagtggcgcacatacatttgtg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  16475496 tctctccaactccccaattcattgtgtacacatgtcaccatgattcaaattcatttttgtctatgaacccggtataaatagtggcgcacatacatttgtg 16475397  T
Q  301 gtacaattaatcttaatggatttccataaaatttctgtttaatcaatctaatcatgtttcattgaatatattttgttc 378  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  16475396 gtacaattaatcttaatggatttccataaaatttatgtttaatcaatctaatcatgtttcattgaatatatttagttc 16475319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 42934852 - 42934795
Alignment:
Q  3 taatcccaaattaattgctaagctaaactgccaaccacccaagtaaatctcaatcgtt 60  Q
    |||||||| |||||||||||| || |||||||||||| || ||| |||||||| ||||    
T  42934852 taatcccatattaattgctaatctcaactgccaaccatcctagttaatctcaaccgtt 42934795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 9359112 - 9359497
Alignment:
Q  1 cctaatcccaaattaattgctaagctaaactgccaaccac----ccaagtaaatctcaatcgtttttaagaggacgtttcattttccctcccaagcttgc 96  Q
    |||||||||| |||||||| |||||||||| |||||||||    ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  9359112 cctaatcccatattaattgttaagctaaacggccaaccacccacccaagtaaatctcaaccgttgttaagaggacgtttcattttccctcccaagcttgc 9359211  T
Q  97 attaatttcagtcattcctgccaactacccactgatccattaaacatttaatgtggccttccatatctctccatgcagcaggtgaatttgtattccacga 196  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||    
T  9359212 attaatttcggtcattcctgccaactacccactgatccattaaacatttaatgtggccttccatatctctccatgcagcaagtgaatttgtattccatga 9359311  T
Q  197 gaagtctctccaact-ccccaattcattgtgtacacatgtcaccatgattcaaattcatttttgtccatgagcccggtataaatagtggc--gcacatac 293  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||  ||||||||    
T  9359312 gaagtctctccaactcccccaattcattgtgtacacatgtcaccatgattcaaattcatttttgtttatgagcccggtataaatagtggcgtgcacatac 9359411  T
Q  294 atttgtggtacaattaatcttaatggatttccataaaatttctg-tttaatcaatctaatcatgtttcattgaatatattttgttc 378  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||| ||||    
T  9359412 atttgtggtacagttaattttaatggattttcataaaatttctgctctaatcaatctaatcatgtttcattgaatatatttggttc 9359497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 131 - 347
Target Start/End: Original strand, 45235105 - 45235324
Alignment:
Q  131 atccattaaacatttaatgtggccttccatatctctccatgcagcaggtgaatttgtattccacgagaagtctctccaactccccaattcattgtgtaca 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  45235105 atccattaaacatttaatgtggccttccatatctctccatgcagcaggtgaatttgtattctacgagaagtctctccaactccccaattcattgtgtaca 45235204  T
Q  231 catgtcaccatgattcaaattcatttttgtccatgagcccggtataaatagtg--gcgcacatacatttgtggtacaattaatcttaatggatttccata 328  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||    
T  45235205 catgtcaccatgattcaaattcatttttgtctatgagtccggtataaatagtggtgtgcacatacatttgtggtacaattaatcttaatggatttccata 45235304  T
Q  329 aaatttctgtt-taatcaat 347  Q
    ||||||||||| ||||||||    
T  45235305 aaatttctgttctaatcaat 45235324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 45234716 - 45234846
Alignment:
Q  1 cctaatcccaaattaattgctaagctaaactgccaaccacccaagtaaatctcaatcgtttttaagaggacgtttcattttccctcccaagcttgcatta 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  45234716 cctaatcccatattaattgctaagctaaactgccaaccacccaagtaaatctcaaccgttgttaagaggacgtttcattttccctcccaagcttgcatta 45234815  T
Q  101 atttcagtcattcctgccaactacccactga 131  Q
    ||||| |||||||||||||| ||||||||||    
T  45234816 atttcggtcattcctgccaattacccactga 45234846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 167 - 253
Target Start/End: Complemental strand, 49195260 - 49195173
Alignment:
Q  167 ccatgcagcaggtgaatttgtattccacgagaagtctctccaactccccaat-tcattgtgtacacatgtcaccatgattcaaattca 253  Q
    |||||||||| |||||||||| |||| ||| |||||||| |||||||||||| ||||| |||||||||||||||||| ||||||||||    
T  49195260 ccatgcagcaagtgaatttgttttccccgaaaagtctctacaactccccaatctcattctgtacacatgtcaccatggttcaaattca 49195173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 340 - 378
Target Start/End: Original strand, 45235464 - 45235502
Alignment:
Q  340 taatcaatctaatcatgtttcattgaatatattttgttc 378  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  45235464 taatcaatctaatcatgtttcattgaatatatttggttc 45235502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 167 - 253
Target Start/End: Original strand, 33366198 - 33366285
Alignment:
Q  167 ccatgcagcaggtgaatttgtattccacgagaagtctctccaactccccaat-tcattgtgtacacatgtcaccatgattcaaattca 253  Q
    |||||||||| |||||||||| |||| ||| |||||||| |||||||||||| ||||| |||||||||||||||||| ||||||||||    
T  33366198 ccatgcagcaagtgaatttgttttccccgaaaagtctctacaactccccaatctcattctgtacacatgtcaccatggttcaaattca 33366285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 42580614 - 42580673
Alignment:
Q  1 cctaatcccaaattaattgctaagctaaactgccaaccacccaagtaaatctcaatcgtt 60  Q
    |||||||||| |||||||||||  ||||||||||||||||||||||||||||||| ||||    
T  42580614 cctaatcccatattaattgctagcctaaactgccaaccacccaagtaaatctcaaccgtt 42580673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 167 - 253
Target Start/End: Complemental strand, 31525304 - 31525217
Alignment:
Q  167 ccatgcagcaggtgaatttgtattccacgagaagtctctccaactccccaat-tcattgtgtacacatgtcaccatgattcaaattca 253  Q
    |||||||||| |||||||||| | || ||| |||||||| |||||||||||| ||||| |||||||||||||||||| ||||||||||    
T  31525304 ccatgcagcaagtgaatttgtttcccccgaaaagtctctacaactccccaatctcattatgtacacatgtcaccatggttcaaattca 31525217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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