View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6854_high_14 (Length: 476)
Name: NF6854_high_14
Description: NF6854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6854_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 44 - 461
Target Start/End: Complemental strand, 51350572 - 51350157
Alignment:
| Q |
44 |
tcatatacttattattttgtaattgttcttgaaggtgctggttgtcacggtcaagaattggagggtgaaatagagtcataagtctctccaatttcaattt |
143 |
Q |
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| T |
51350572 |
tcatatacttattattttgtaattgttcttgaaggtgctggttgtcacagtcaagaattggagggtgaaatagagtcataagtctcttcaatttcaattt |
51350473 |
T |
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| Q |
144 |
taaattcaggttggagtaaatgtagttatttctattttatattcaataataccagtactacattattagcataccagtatagattatcacaagtggtaga |
243 |
Q |
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| T |
51350472 |
taaattcaggttggagtaaatgtagttatttctattttatattcaataataccagtactacattattagcataccagtatagattatcacaagtggtaga |
51350373 |
T |
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| Q |
244 |
tatcaattaatgcagagatatcttattaattttgtttttactacaagcatcaagattctactgtgctaaattgacaattgcagtaatatattcaccatca |
343 |
Q |
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| T |
51350372 |
tatcaattaatgcagagatatcttattaattttgtttttactacaagcatcaagattctactgtgctaaattgacaattgcagtaatatattcacc---a |
51350276 |
T |
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| Q |
344 |
tcatcatgagtgcacattcgcattta-ggtgagtttgatagaatcgcggtgtgcttctgtgaatttgacagaaactatactttgcagctctaataaaatc |
442 |
Q |
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| T |
51350275 |
tcactatgagtgcacattcgcatttatggtgaatttgatagaatcgcggtgtgcttctgtgaatttgacagaaactatactttgcagctctaataaaatc |
51350176 |
T |
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| Q |
443 |
aatgtcactgtgatattct |
461 |
Q |
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| T |
51350175 |
aatgtcactgtgatattct |
51350157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 51350637 - 51350594
Alignment:
| Q |
1 |
aattatcgttttcgaacgtgtgagagttttagtattttgacaat |
44 |
Q |
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| T |
51350637 |
aattatcgttttcgaacgtgtgagagttttagtattgtgacaat |
51350594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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