View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6854_high_17 (Length: 463)

Name: NF6854_high_17
Description: NF6854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6854_high_17
NF6854_high_17
[»] chr7 (32 HSPs)
chr7 (57-450)||(8325236-8325635)
chr7 (266-417)||(15755927-15756078)
chr7 (129-192)||(4437495-4437558)
chr7 (129-192)||(4444896-4444959)
chr7 (245-417)||(3172163-3172332)
chr7 (129-191)||(16382178-16382240)
chr7 (271-371)||(16436408-16436508)
chr7 (129-197)||(45148204-45148272)
chr7 (131-192)||(14939426-14939487)
chr7 (131-192)||(15367019-15367080)
chr7 (129-189)||(33558343-33558403)
chr7 (129-192)||(9609889-9609952)
chr7 (129-192)||(9837461-9837524)
chr7 (129-192)||(31499852-31499915)
chr7 (129-192)||(48353987-48354050)
chr7 (129-191)||(34242595-34242657)
chr7 (137-197)||(16207054-16207114)
chr7 (129-192)||(16921406-16921469)
chr7 (109-305)||(26427125-26427328)
chr7 (127-311)||(6461265-6461456)
chr7 (245-302)||(16195656-16195712)
chr7 (275-311)||(13460840-13460876)
chr7 (153-189)||(16918234-16918270)
chr7 (153-192)||(17225410-17225449)
chr7 (129-159)||(15979563-15979593)
chr7 (266-311)||(9128922-9128967)
chr7 (266-311)||(39293366-39293411)
chr7 (271-311)||(6210575-6210615)
chr7 (275-311)||(12246474-12246510)
chr7 (275-311)||(14252968-14253004)
chr7 (271-311)||(14278128-14278168)
chr7 (275-311)||(45148083-45148119)
[»] chr8 (21 HSPs)
chr8 (57-417)||(18032750-18033114)
chr8 (273-416)||(23543826-23543970)
chr8 (129-192)||(19333110-19333173)
chr8 (132-192)||(24554068-24554128)
chr8 (129-223)||(26010062-26010153)
chr8 (129-192)||(29296543-29296606)
chr8 (129-192)||(7468891-7468954)
chr8 (132-191)||(15931973-15932032)
chr8 (129-192)||(24266646-24266709)
chr8 (129-192)||(23227506-23227569)
chr8 (271-372)||(31195907-31196008)
chr8 (152-223)||(17265504-17265572)
chr8 (266-314)||(24623307-24623355)
chr8 (153-192)||(17283914-17283953)
chr8 (271-306)||(24906446-24906481)
chr8 (275-311)||(16041171-16041207)
chr8 (275-311)||(16042847-16042883)
chr8 (275-311)||(17500518-17500554)
chr8 (275-311)||(18610760-18610796)
chr8 (275-311)||(25608642-25608678)
chr8 (160-192)||(38637167-38637199)
[»] scaffold0282 (1 HSPs)
scaffold0282 (57-239)||(20382-20565)
[»] scaffold0333 (1 HSPs)
scaffold0333 (61-226)||(1409-1572)
[»] scaffold0005 (2 HSPs)
scaffold0005 (57-223)||(199458-199623)
scaffold0005 (271-305)||(200826-200860)
[»] chr4 (25 HSPs)
chr4 (57-223)||(14617754-14617919)
chr4 (57-190)||(18420298-18420434)
chr4 (271-416)||(18667805-18667951)
chr4 (129-192)||(12732791-12732854)
chr4 (333-416)||(18713540-18713623)
chr4 (328-415)||(5889743-5889832)
chr4 (152-311)||(19076291-19076452)
chr4 (325-417)||(12415209-12415293)
chr4 (137-190)||(42707399-42707452)
chr4 (129-192)||(7187397-7187460)
chr4 (129-192)||(38763427-38763490)
chr4 (127-190)||(10115854-10115918)
chr4 (129-192)||(18275463-18275526)
chr4 (276-312)||(11774843-11774879)
chr4 (271-305)||(14616517-14616551)
chr4 (272-310)||(15676507-15676545)
chr4 (271-372)||(20847339-20847440)
chr4 (341-401)||(11774762-11774822)
chr4 (352-396)||(17957534-17957577)
chr4 (271-303)||(17958490-17958522)
chr4 (275-311)||(19699238-19699274)
chr4 (275-311)||(19709823-19709859)
chr4 (341-401)||(21958569-21958629)
chr4 (275-311)||(40902370-40902406)
chr4 (275-311)||(41918420-41918456)
[»] scaffold0205 (2 HSPs)
scaffold0205 (57-223)||(3893-4059)
scaffold0205 (167-305)||(4038-4176)
[»] chr3 (33 HSPs)
chr3 (273-400)||(8853552-8853679)
chr3 (109-311)||(27050239-27050443)
chr3 (276-453)||(10724833-10725016)
chr3 (129-197)||(17759919-17759987)
chr3 (129-197)||(19061239-19061307)
chr3 (266-396)||(16220351-16220481)
chr3 (265-416)||(13438448-13438600)
chr3 (131-192)||(17320068-17320129)
chr3 (129-192)||(4163673-4163736)
chr3 (129-192)||(18968736-18968799)
chr3 (129-192)||(43429026-43429089)
chr3 (129-191)||(21168206-21168268)
chr3 (277-385)||(19633441-19633550)
chr3 (129-192)||(4147166-4147229)
chr3 (129-192)||(14817185-14817248)
chr3 (129-192)||(25105454-25105517)
chr3 (129-192)||(6230122-6230188)
chr3 (136-191)||(34558515-34558570)
chr3 (153-192)||(12020605-12020644)
chr3 (153-192)||(17203320-17203359)
chr3 (245-311)||(2548038-2548105)
chr3 (266-311)||(11401079-11401124)
chr3 (271-311)||(17385351-17385391)
chr3 (271-311)||(54040208-54040248)
chr3 (271-311)||(54049495-54049535)
chr3 (245-307)||(12254393-12254453)
chr3 (271-305)||(6808921-6808955)
chr3 (272-310)||(25606936-25606974)
chr3 (275-312)||(31413915-31413952)
chr3 (152-192)||(15549172-15549212)
chr3 (275-311)||(15551132-15551168)
chr3 (271-311)||(17391840-17391880)
chr3 (271-311)||(25105585-25105625)
[»] scaffold0058 (1 HSPs)
scaffold0058 (143-400)||(79238-79493)
[»] scaffold0219 (1 HSPs)
scaffold0219 (5-192)||(25302-25491)
[»] chr6 (27 HSPs)
chr6 (266-417)||(1560297-1560448)
chr6 (129-314)||(5485823-5486007)
chr6 (129-197)||(4173162-4173230)
chr6 (129-197)||(4228771-4228839)
chr6 (129-197)||(29161995-29162063)
chr6 (129-192)||(32350720-32350783)
chr6 (129-192)||(15006140-15006203)
chr6 (129-197)||(11374336-11374404)
chr6 (265-395)||(19728996-19729127)
chr6 (129-192)||(29604207-29604270)
chr6 (133-197)||(17375241-17375305)
chr6 (129-192)||(18631100-18631163)
chr6 (208-305)||(24217359-24217457)
chr6 (325-372)||(10973245-10973292)
chr6 (265-314)||(12975025-12975074)
chr6 (153-192)||(21621781-21621820)
chr6 (153-192)||(22363687-22363726)
chr6 (109-190)||(14874942-14875023)
chr6 (153-195)||(25918331-25918373)
chr6 (129-159)||(31162373-31162403)
chr6 (271-311)||(12466181-12466221)
chr6 (275-311)||(16374881-16374917)
chr6 (132-160)||(16375036-16375064)
chr6 (275-311)||(19627830-19627866)
chr6 (275-311)||(22595128-22595164)
chr6 (275-311)||(31162523-31162559)
chr6 (275-311)||(35010948-35010984)
[»] chr5 (16 HSPs)
chr5 (129-197)||(21108171-21108239)
chr5 (129-192)||(26561277-26561340)
chr5 (129-192)||(6455319-6455382)
chr5 (129-192)||(29912698-29912761)
chr5 (129-191)||(5622919-5622981)
chr5 (111-305)||(37278075-37278276)
chr5 (245-365)||(25340876-25340995)
chr5 (129-192)||(24082755-24082818)
chr5 (265-366)||(19318119-19318220)
chr5 (325-372)||(19266820-19266867)
chr5 (271-306)||(33627894-33627929)
chr5 (272-310)||(18532420-18532458)
chr5 (272-310)||(22055384-22055422)
chr5 (271-311)||(14343509-14343549)
chr5 (275-311)||(16837014-16837050)
chr5 (275-311)||(34937951-34937987)
[»] chr1 (9 HSPs)
chr1 (129-197)||(33395960-33396028)
chr1 (129-191)||(49998806-49998868)
chr1 (133-192)||(40437764-40437823)
chr1 (129-192)||(46144415-46144478)
chr1 (153-192)||(17022213-17022252)
chr1 (132-183)||(52399275-52399326)
chr1 (271-312)||(21199241-21199282)
chr1 (275-311)||(20252698-20252734)
chr1 (275-311)||(33395840-33395876)
[»] chr2 (16 HSPs)
chr2 (129-192)||(25132827-25132890)
chr2 (152-239)||(34135778-34135865)
chr2 (135-196)||(20272008-20272069)
chr2 (129-189)||(6093474-6093534)
chr2 (129-192)||(19660978-19661041)
chr2 (129-192)||(24881247-24881310)
chr2 (264-372)||(18994703-18994810)
chr2 (271-312)||(24533278-24533319)
chr2 (57-134)||(34135698-34135777)
chr2 (153-192)||(9782416-9782455)
chr2 (153-192)||(40641786-40641825)
chr2 (272-310)||(24342999-24343037)
chr2 (275-372)||(45619705-45619803)
chr2 (275-311)||(7513687-7513723)
chr2 (275-311)||(22331166-22331202)
chr2 (275-311)||(42180034-42180070)
[»] scaffold1204 (1 HSPs)
scaffold1204 (129-191)||(1697-1759)
[»] scaffold0317 (2 HSPs)
scaffold0317 (129-197)||(15380-15448)
scaffold0317 (271-311)||(15512-15552)
[»] scaffold0003 (1 HSPs)
scaffold0003 (271-371)||(26038-26138)
[»] scaffold0357 (1 HSPs)
scaffold0357 (129-192)||(6379-6442)
[»] scaffold0253 (2 HSPs)
scaffold0253 (129-192)||(9996-10059)
scaffold0253 (129-192)||(19421-19484)
[»] scaffold0174 (2 HSPs)
scaffold0174 (129-196)||(21571-21638)
scaffold0174 (129-192)||(1226-1289)
[»] scaffold0107 (1 HSPs)
scaffold0107 (129-192)||(12084-12147)
[»] scaffold0006 (1 HSPs)
scaffold0006 (129-192)||(198841-198904)
[»] scaffold0031 (1 HSPs)
scaffold0031 (129-191)||(98643-98705)
[»] scaffold0013 (1 HSPs)
scaffold0013 (129-197)||(10846-10913)
[»] scaffold0387 (1 HSPs)
scaffold0387 (129-192)||(2427-2490)
[»] scaffold0047 (1 HSPs)
scaffold0047 (129-192)||(1558-1621)
[»] scaffold0024 (1 HSPs)
scaffold0024 (245-372)||(101086-101215)
[»] scaffold0017 (1 HSPs)
scaffold0017 (130-197)||(11226-11293)
[»] scaffold0111 (1 HSPs)
scaffold0111 (58-159)||(23029-23133)
[»] scaffold0021 (3 HSPs)
scaffold0021 (129-190)||(19259-19320)
scaffold0021 (129-190)||(23524-23585)
scaffold0021 (129-190)||(28835-28896)
[»] scaffold0175 (1 HSPs)
scaffold0175 (129-192)||(6643-6706)
[»] scaffold0032 (1 HSPs)
scaffold0032 (129-192)||(106095-106158)
[»] scaffold0028 (1 HSPs)
scaffold0028 (129-192)||(63949-64012)
[»] scaffold0412 (1 HSPs)
scaffold0412 (265-372)||(1624-1730)
[»] scaffold0009 (2 HSPs)
scaffold0009 (153-192)||(68148-68187)
scaffold0009 (266-311)||(256037-256082)
[»] scaffold0508 (1 HSPs)
scaffold0508 (265-314)||(5847-5896)
[»] scaffold0112 (1 HSPs)
scaffold0112 (129-160)||(12366-12397)
[»] scaffold0186 (1 HSPs)
scaffold0186 (271-372)||(11471-11573)
[»] scaffold0010 (1 HSPs)
scaffold0010 (154-192)||(29752-29790)
[»] scaffold0123 (1 HSPs)
scaffold0123 (245-311)||(33830-33897)
[»] scaffold1869 (1 HSPs)
scaffold1869 (245-305)||(801-860)
[»] scaffold0396 (1 HSPs)
scaffold0396 (275-311)||(171-207)
[»] scaffold0138 (3 HSPs)
scaffold0138 (275-311)||(26806-26842)
scaffold0138 (275-311)||(27821-27857)
scaffold0138 (275-311)||(39817-39853)
[»] scaffold0115 (1 HSPs)
scaffold0115 (275-311)||(20219-20255)


Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 57 - 450
Target Start/End: Original strand, 8325236 - 8325635
Alignment:
Q  57 attggaggtgtacttttacattgtttgtgattatatagttggtgttagacggattgtcgagtcttacttgaagtccatgcatcatagtcatattgagtca 156  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8325236 attggaggtgtacttttacattgttggtgattatatagttggtgttaaacggattgtcgagtcttacttgaagtccatgcatcatagtcatattaagtca 8325335  T
Q  157 tatgagaaatgtaaaaggagatgtacttttacataggtgaaatacatgggaggaggtgtactcttacgtgagtgtgtattcaaactgt-aaattatcttc 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||    
T  8325336 tatgagaaatgtaaaaggagatgtacttttacataggtgaaatacatgggaggaggtgtactcttacgtgggtgtggattcaaactgtaaaattatcttc 8325435  T
Q  256 ggactcctatatggcaccacatgcatctagatgagtctagaacattgcatacatttattgattaactaatcgagtcatacttgaatatgtgaatcggtgt 355  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  8325436 ggactcc--tatggcaccacatgcatctagatgagtctagaacattgcatacatttattgattaactagtcgagtcatacttgaatatgtgaatcggtgt 8325533  T
Q  356 atatgtgcattggtgaatttttggtgattgtcgtgaatacttgaacaaagtgaattgtatg-------cgattgtggttgtatacttgtggacttatgat 448  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||| ||||||||||||||||||||||||||    
T  8325534 atatgtgcattggtgaatttttggtgattgtcgtgaatacttgaacaaagtgaattgtatgcattactcgattctggttgtatacttgtggacttatgat 8325633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 266 - 417
Target Start/End: Original strand, 15755927 - 15756078
Alignment:
Q  266 atggcaccacatgcatctagatgagtctagaacattgcatacatttattgattaactaatcgagtcatacttgaatatgtgaatcggtgtatatgtgcat 365  Q
    |||| |||||||| || |||| |||||||||||||||||  || || || ||| |  ||||||||||||||||||||||  |||| ||||||||||||||    
T  15755927 atggtaccacatgtatatagaagagtctagaacattgcaagcaattgttaattgatgaatcgagtcatacttgaatatgcaaatcagtgtatatgtgcat 15756026  T
Q  366 tggtgaatttttggtgattgtcgtgaatacttgaacaaagtgaattgtatgc 417  Q
    |||||||| |||||||||||| |||||| |||||  ||||||||||||||||    
T  15756027 tggtgaatgtttggtgattgttgtgaattcttgagaaaagtgaattgtatgc 15756078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 4437558 - 4437495
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  4437558 gtccatgcatcatagtcatatcgagtcatatgagaaatgtaaaaggagatgtacttttacatag 4437495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 4444959 - 4444896
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  4444959 gtccatgcatcatagtcatatcgagtcatatgagaaatgtaaaaggagatgtacttttacatag 4444896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 245 - 417
Target Start/End: Original strand, 3172163 - 3172332
Alignment:
Q  245 aaattatcttcggactcctatatggcaccacatgcatctagatgagtctagaacattgcatacatttattgattaactaatcgagtcatacttgaatatg 344  Q
    ||||||||| |||| ||||||  || |||||||||||||||| |||| || |||||||||| |||||||  ||| |  | | ||||| ||||||| ||||    
T  3172163 aaattatctccggaatcctat--ggtaccacatgcatctagaagagtttaaaacattgcatgcatttatctattcatgagttgagtcgtacttgattatg 3172260  T
Q  345 tgaatcggtgtatatgtgcattggtgaatttttggtgattgtcgtgaatacttgaacaaagtgaattgtatgc 417  Q
    |||||  || |||||||||||||||| | ||||||||||| | |||||||||||||||| || ||||||||||    
T  3172261 tgaatttgtatatatgtgcattggtg-acttttggtgatttttgtgaatacttgaacaatgttaattgtatgc 3172332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 129 - 191
Target Start/End: Complemental strand, 16382240 - 16382178
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacata 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  16382240 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggaggtgtactcttacata 16382178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 271 - 371
Target Start/End: Original strand, 16436408 - 16436508
Alignment:
Q  271 accacatgcatctagatgagtctagaacattgcatacatttattgattaactaatcgagtcatacttgaatatgtgaatcggtgtatatgtgcattggtg 370  Q
    |||||||||||||||| ||||||||||||| |||| |||||||  |||    | ||||||| ||||||| ||||||||||||||||||||||||||||||    
T  16436408 accacatgcatctagaagagtctagaacatagcatgcatttatctattggtgagtcgagtcttacttgattatgtgaatcggtgtatatgtgcattggtg 16436507  T
Q  371 a 371  Q
    |    
T  16436508 a 16436508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 45148272 - 45148204
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaa 197  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||| ||||    
T  45148272 gtccatgcatcatagtcatattaagtcatatgagaaatgtaaaaggaggtgtatttttacatagttgaa 45148204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 131 - 192
Target Start/End: Complemental strand, 14939487 - 14939426
Alignment:
Q  131 ccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  14939487 ccatgcatcatcgtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 14939426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 131 - 192
Target Start/End: Complemental strand, 15367080 - 15367019
Alignment:
Q  131 ccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  15367080 ccatgcatcatcgtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 15367019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 129 - 189
Target Start/End: Complemental strand, 33558403 - 33558343
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttaca 189  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||    
T  33558403 gtccatgcatcgtggtcatattgagtcatatgagaaatgtaaaaggaggtgtacttttaca 33558343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 9609952 - 9609889
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||  |||||||||||||||    
T  9609952 gtccatgcatcattgtcatatcgagtcatatgagaaatgtaaaaggatgtgtacttttacatag 9609889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 9837524 - 9837461
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    |||||| |||||| ||||||| |||||||||||||||||||||||||  |||||||||||||||    
T  9837524 gtccattcatcattgtcatatcgagtcatatgagaaatgtaaaaggatgtgtacttttacatag 9837461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 31499915 - 31499852
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    |||||| |||||||||||||| |||| ||||||| ||||||||||||| |||||||||||||||    
T  31499915 gtccattcatcatagtcatatcgagttatatgagtaatgtaaaaggaggtgtacttttacatag 31499852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 48354050 - 48353987
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    ||||||| ||||| ||||||| ||||||||||||||||||||||||| ||| ||||||||||||    
T  48354050 gtccatgtatcattgtcatatcgagtcatatgagaaatgtaaaaggatatgcacttttacatag 48353987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 129 - 191
Target Start/End: Original strand, 34242595 - 34242657
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacata 191  Q
    |||||||||||   ||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  34242595 gtccatgcatctgtgtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacata 34242657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 16207114 - 16207054
Alignment:
Q  137 atcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaa 197  Q
    ||||||| || ||||||||||||||||||||||||||||| |||| |||||||||| ||||    
T  16207114 atcatagacaaattgagtcatatgagaaatgtaaaaggaggtgtaattttacatagttgaa 16207054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 129 - 192
Target Start/End: Original strand, 16921406 - 16921469
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    ||||||||||||| ||||||| |||||||| ||||||||||||||||  ||| |||||||||||    
T  16921406 gtccatgcatcattgtcatatcgagtcataagagaaatgtaaaaggatgtgttcttttacatag 16921469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 109 - 305
Target Start/End: Complemental strand, 26427328 - 26427125
Alignment:
Q  109 attgtcgagtctt-acttgaagtccatgcat-catagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag-----gtgaaatac 201  Q
    ||||||||||||| |||| ||||| |||||| ||||||||||||||||| |||||  |||||||| | || | ||||||||| | |     || ||||||    
T  26427328 attgtcgagtctttacttaaagtctatgcattcatagtcatattgagtcttatgaataatgtaaatgaaggt-tacttttaccttgctttggtaaaatac 26427230  T
Q  202 atgggaggaggtgtactcttacgtgagtgtgtattcaaactg--taaattatcttcggactcctatatggcaccacatgcatctagatgagtctagaaca 299  Q
    ||  | ||||||||||||||| ||| ||||| ||||||  ||   |||||||||||||| ||| || ||| ||||| ||||| |||| ||||||||||||    
T  26427229 ataagtggaggtgtactcttatgtgggtgtggattcaatatggtaaaattatcttcggaatccaat-tggtaccacgtgcatttagaagagtctagaaca 26427131  T
Q  300 ttgcat 305  Q
    ||||||    
T  26427130 ttgcat 26427125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 311
Target Start/End: Original strand, 6461265 - 6461456
Alignment:
Q  127 aagtccatgcatc-atagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttaca-----taggtgaaatacatgggaggaggtgtactct 220  Q
    ||||||||||||  |||||||| ||||||| |||||  |||||||| |||||||||||||||||     | |||||||||  |  | |||||||||||||    
T  6461265 aagtccatgcatttatagtcatgttgagtcttatgaagaatgtaaatggagatgtacttttacattgctttggtgaaatatgtaagtggaggtgtactct 6461364  T
Q  221 tacgtgagtgtgtattcaa-actg-taaattatcttcggactcctatatggcaccacatgcatctagatgagtctagaacattgcatacattt 311  Q
    |||||| | ||| |||||| || |  |||||||||||||| ||  || ||| ||||||||||||| || ||||||| |||||| ||| |||||    
T  6461365 tacgtgggcgtggattcaatacggcaaaattatcttcggaatcgaat-tggtaccacatgcatcttgaagagtctaaaacatttcatgcattt 6461456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 245 - 302
Target Start/End: Complemental strand, 16195712 - 16195656
Alignment:
Q  245 aaattatcttcggactcctatatggcaccacatgcatctagatgagtctagaacattg 302  Q
    |||||||| ||||| ||||| |||| ||||||||||||||||||||||||||| ||||    
T  16195712 aaattatcgtcggaatccta-atggtaccacatgcatctagatgagtctagaatattg 16195656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 311
Target Start/End: Complemental strand, 13460876 - 13460840
Alignment:
Q  275 catgcatctagatgagtctagaacattgcatacattt 311  Q
    |||||||||||| ||||||||||||||||||||||||    
T  13460876 catgcatctagaagagtctagaacattgcatacattt 13460840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 189
Target Start/End: Complemental strand, 16918270 - 16918234
Alignment:
Q  153 gtcatatgagaaatgtaaaaggagatgtacttttaca 189  Q
    |||||||||||||||||||||||| ||||||||||||    
T  16918270 gtcatatgagaaatgtaaaaggaggtgtacttttaca 16918234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 192
Target Start/End: Original strand, 17225410 - 17225449
Alignment:
Q  153 gtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    |||||||| ||||||||||||||| |||||||||||||||    
T  17225410 gtcatatgtgaaatgtaaaaggaggtgtacttttacatag 17225449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 159
Target Start/End: Original strand, 15979563 - 15979593
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatat 159  Q
    |||||||||||||||||||||||||||||||    
T  15979563 gtccatgcatcatagtcatattgagtcatat 15979593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 311
Target Start/End: Original strand, 9128922 - 9128967
Alignment:
Q  266 atggcaccacatgcatctagatgagtctagaacattgcatacattt 311  Q
    |||| |||||||||||||||| ||||||||||||||| || |||||    
T  9128922 atggtaccacatgcatctagaagagtctagaacattgtatgcattt 9128967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 311
Target Start/End: Original strand, 39293366 - 39293411
Alignment:
Q  266 atggcaccacatgcatctagatgagtctagaacattgcatacattt 311  Q
    |||| ||| |||||||||||| |||||||||||||||||| |||||    
T  39293366 atggtaccgcatgcatctagaagagtctagaacattgcatgcattt 39293411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 6210575 - 6210615
Alignment:
Q  271 accacatgcatctagatgagtctagaacattgcatacattt 311  Q
    |||| ||||||||||| |||||||||||||||||| |||||    
T  6210575 accatatgcatctagaagagtctagaacattgcatgcattt 6210615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 311
Target Start/End: Complemental strand, 12246510 - 12246474
Alignment:
Q  275 catgcatctagatgagtctagaacattgcatacattt 311  Q
    |||||||||||| |||||||||||||||||| |||||    
T  12246510 catgcatctagaagagtctagaacattgcatgcattt 12246474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 311
Target Start/End: Original strand, 14252968 - 14253004
Alignment:
Q  275 catgcatctagatgagtctagaacattgcatacattt 311  Q
    |||||||||||| |||||||||||||||||| |||||    
T  14252968 catgcatctagaagagtctagaacattgcatgcattt 14253004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 14278128 - 14278168
Alignment:
Q  271 accacatgcatctagatgagtctagaacattgcatacattt 311  Q
    ||||||||||| |||| |||||||||||||||||| |||||    
T  14278128 accacatgcatttagaagagtctagaacattgcatgcattt 14278168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 311
Target Start/End: Complemental strand, 45148119 - 45148083
Alignment:
Q  275 catgcatctagatgagtctagaacattgcatacattt 311  Q
    |||||||||||| |||||||||||||||||| |||||    
T  45148119 catgcatctagaagagtctagaacattgcatgcattt 45148083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 158; Significance: 7e-84; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 57 - 417
Target Start/End: Complemental strand, 18033114 - 18032750
Alignment:
Q  57 attggaggtgtacttttacattgtttg--tgattatatagttggtgttagacggattgtcgagtcttacttgaagtccatgca---tcatagtcatattg 151  Q
    |||||||||||||||||||||||||||  || ||||||||||||||||||  | |||||||||||||||||||||||||||||   |||| |||||||||    
T  18033114 attggaggtgtacttttacattgtttgggtggttatatagttggtgttaggtgcattgtcgagtcttacttgaagtccatgcagcatcatggtcatattg 18033015  T
Q  152 agtcatatgagaaatgtaaaaggagatgtacttttacataggtgaaatacatgggaggaggtgtactcttacgtgagtgtgtattcaaactgt-aaatta 250  Q
    |||||||||| |||||||||| ||  |||||||||||||||||||||||| |  ||||||||||||||||||||| |||||  ||||||| || ||||||    
T  18033014 agtcatatgaaaaatgtaaaatgaagtgtacttttacataggtgaaatacgtaagaggaggtgtactcttacgtgggtgtgggttcaaacggtaaaatta 18032915  T
Q  251 tcttcggactcctatatggcaccacatgcatctagatgagtctagaacattgcatacatttattgattaactaatcgagtcatacttgaatatgtgaatc 350  Q
    |||   || | ||| |||| ||||||||||||||||||||||||||||||||||  ||||| || |||    | ||||| |||||||| |||||||||||    
T  18032914 tctcttgaat-cta-atggtaccacatgcatctagatgagtctagaacattgcacgcatttgttaattggtgagtcgagccatacttggatatgtgaatc 18032817  T
Q  351 ggtgtatatgtgcattggtgaatttttggtgattgtcgtgaatacttgaacaaagtgaattgtatgc 417  Q
    |||||||||||| |||||||||| ||||||||| || || |||||||||| || ||||||| |||||    
T  18032816 ggtgtatatgtgtattggtgaatgtttggtgatcgttgtcaatacttgaaaaaggtgaattatatgc 18032750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 273 - 416
Target Start/End: Original strand, 23543826 - 23543970
Alignment:
Q  273 cacatgcatctagatgagtctagaacattgcatacatttattgattaactaatcgagtcat-acttgaatatgtgaatcggtgtatatgtgcattggtga 371  Q
    |||||||||||||| |||||||||||||||||| || ||||| |||    | ||||||| | | |||||||||||||||||||||||||||||||| |||    
T  23543826 cacatgcatctagaagagtctagaacattgcatgcacttattaattggtgagtcgagtccttatttgaatatgtgaatcggtgtatatgtgcattgttga 23543925  T
Q  372 atttttggtgattgtcgtgaatacttgaacaaagtgaattgtatg 416  Q
    | ||||||| ||||| ||| |||||||||||||||||||||||||    
T  23543926 acttttggtaattgttgtggatacttgaacaaagtgaattgtatg 23543970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 129 - 192
Target Start/End: Original strand, 19333110 - 19333173
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  19333110 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 19333173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 132 - 192
Target Start/End: Original strand, 24554068 - 24554128
Alignment:
Q  132 catgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  24554068 catgcatcatagtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 24554128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 129 - 223
Target Start/End: Complemental strand, 26010153 - 26010062
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaaatacatgggaggaggtgtactcttac 223  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||| ||   | |||  ||||||||||||||||||    
T  26010153 gtccatgcatcattgtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatagttg---tgcataagaggaggtgtactcttac 26010062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 29296606 - 29296543
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  29296606 gtccatgcatcattgtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 29296543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 7468954 - 7468891
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||| | |||||||||||||    
T  7468954 gtccatgcatcatagtcatatcgagtcatatgagaaatgtaaaacgaggtatacttttacatag 7468891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 132 - 191
Target Start/End: Complemental strand, 15932032 - 15931973
Alignment:
Q  132 catgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacata 191  Q
    |||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  15932032 catgcatcatcgtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacata 15931973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 24266709 - 24266646
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    |||| |||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  24266709 gtccgtgcatcattgtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 24266646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 129 - 192
Target Start/End: Original strand, 23227506 - 23227569
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    |||||||||| || ||||||| |||||||||| ||||||||||||||| |||||||||||||||    
T  23227506 gtccatgcattatcgtcatatcgagtcatatgtgaaatgtaaaaggaggtgtacttttacatag 23227569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 271 - 372
Target Start/End: Original strand, 31195907 - 31196008
Alignment:
Q  271 accacatgcatctagatgagtctagaacattgcatacattt-attgattaactaatcgagtcatacttgaatatgtgaatcggtgtatatgtgcattggt 369  Q
    |||||||||||||||| |||||||||||||||||| ||||| | | ||| |  | ||| |||||| |||||||||||| | ||| ||| |||||||||||    
T  31195907 accacatgcatctagaagagtctagaacattgcatgcatttgaataattgatgagtcgtgtcataattgaatatgtgacttggt-tatttgtgcattggt 31196005  T
Q  370 gaa 372  Q
    |||    
T  31196006 gaa 31196008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 152 - 223
Target Start/End: Complemental strand, 17265572 - 17265504
Alignment:
Q  152 agtcatatgagaaatgtaaaaggagatgtacttttacataggtgaaatacatgggaggaggtgtactcttac 223  Q
    ||||||||||||||||||||| ||| ||||||||||||||| ||   | |||  ||||||||||||||||||    
T  17265572 agtcatatgagaaatgtaaaaagaggtgtacttttacatagttg---ttcataagaggaggtgtactcttac 17265504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 314
Target Start/End: Complemental strand, 24623355 - 24623307
Alignment:
Q  266 atggcaccacatgcatctagatgagtctagaacattgcatacatttatt 314  Q
    |||| |||||||||||||||| |||| ||||||||||||| ||||||||    
T  24623355 atggtaccacatgcatctagaagagtttagaacattgcatgcatttatt 24623307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 192
Target Start/End: Complemental strand, 17283953 - 17283914
Alignment:
Q  153 gtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    |||||||| ||||||||||||||| |||||||||||||||    
T  17283953 gtcatatgtgaaatgtaaaaggaggtgtacttttacatag 17283914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 306
Target Start/End: Complemental strand, 24906481 - 24906446
Alignment:
Q  271 accacatgcatctagatgagtctagaacattgcata 306  Q
    |||||||||||| |||||||||||||||||||||||    
T  24906481 accacatgcatcaagatgagtctagaacattgcata 24906446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 311
Target Start/End: Original strand, 16041171 - 16041207
Alignment:
Q  275 catgcatctagatgagtctagaacattgcatacattt 311  Q
    |||||||||||| |||||||||||||||||| |||||    
T  16041171 catgcatctagaagagtctagaacattgcatgcattt 16041207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 311
Target Start/End: Original strand, 16042847 - 16042883
Alignment:
Q  275 catgcatctagatgagtctagaacattgcatacattt 311  Q
    |||||||||||| |||||||||||||||||| |||||    
T  16042847 catgcatctagaagagtctagaacattgcatgcattt 16042883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 311
Target Start/End: Complemental strand, 17500554 - 17500518
Alignment:
Q  275 catgcatctagatgagtctagaacattgcatacattt 311  Q
    |||||||||||| |||||||||||||||||| |||||    
T  17500554 catgcatctagaagagtctagaacattgcatgcattt 17500518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 311
Target Start/End: Complemental strand, 18610796 - 18610760
Alignment:
Q  275 catgcatctagatgagtctagaacattgcatacattt 311  Q
    |||||||||||| |||||||||||||||||| |||||    
T  18610796 catgcatctagaagagtctagaacattgcatgcattt 18610760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 311
Target Start/End: Complemental strand, 25608678 - 25608642
Alignment:
Q  275 catgcatctagatgagtctagaacattgcatacattt 311  Q
    |||||||||||| |||||||||||||||||| |||||    
T  25608678 catgcatctagaagagtctagaacattgcatgcattt 25608642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 192
Target Start/End: Original strand, 38637167 - 38637199
Alignment:
Q  160 gagaaatgtaaaaggagatgtacttttacatag 192  Q
    ||||||||||||||||| |||||||||||||||    
T  38637167 gagaaatgtaaaaggaggtgtacttttacatag 38637199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0282 (Bit Score: 116; Significance: 8e-59; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 57 - 239
Target Start/End: Original strand, 20382 - 20565
Alignment:
Q  57 attggaggtgtacttttacattgtttg-tgattatatagttggtgttagacggattgtcgagtcttacttgaagtccatgcatcatagtcatattgagtc 155  Q
    |||||||||||||||||| |||| ||| ||||||||||| | |||||||  | |||||||||||||||||||||||||||||||||||||||||||||||    
T  20382 attggaggtgtacttttatattgcttggtgattatatagattgtgttaggtgcattgtcgagtcttacttgaagtccatgcatcatagtcatattgagtc 20481  T
Q  156 atatgagaaatgtaaaaggagatgtacttttacataggtgaaatacatgggaggaggtgtactcttacgtgagtgtgtattcaa 239  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |  |||||| | |||||||||||| ||||| ||||||    
T  20482 atatgagaaatgtaaaaggaggtgtacttttacataggtgaaatacgtaagaggagttttactcttacgtgggtgtggattcaa 20565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0333 (Bit Score: 108; Significance: 5e-54; HSPs: 1)
Name: scaffold0333
Description:

Target: scaffold0333; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 61 - 226
Target Start/End: Original strand, 1409 - 1572
Alignment:
Q  61 gaggtgtacttttacattgttt--gtgattatatagttggtgttagacggattgtcgagtcttacttgaagtccatgcatcatagtcatattgagtcata 158  Q
    ||||||||||||||||||| ||  ||||||||||||||||||||||  | |||||||||||||    |||||||||| ||||||||||||||||||||||    
T  1409 gaggtgtacttttacattgctttggtgattatatagttggtgttaggtgcattgtcgagtctt----gaagtccatgtatcatagtcatattgagtcata 1504  T
Q  159 tgagaaatgtaaaaggagatgtacttttacataggtgaaatacatgggaggaggtgtactcttacgtg 226  Q
    ||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||    
T  1505 tgagaaatgtaaaaggagatgtacttttacataggtgaaatacttaagaggaggtgtactcttacgtg 1572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 101; Significance: 7e-50; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 57 - 223
Target Start/End: Original strand, 199458 - 199623
Alignment:
Q  57 attggaggtgtacttttacattgtttgt-gattatatagttggtgttagacggattgtcgagtcttacttgaagtccatgcatcatagtcatattgagtc 155  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||| || ||||||||||||||  ||| ||||||||||||  |||||||||||||    
T  199458 attggaggtgtacttttacattgtttggcgattatatagttggtgttaggcgcattgtcgagtcttatgtgacgtccatgcatca--gtcatattgagtc 199555  T
Q  156 atatgagaaatgtaaaaggagatgtacttttacataggtgaaatacatgggaggaggtgtactcttac 223  Q
    ||||||||||||||||| ||| ||||| |||||||||||||||||| | |||||||||||| ||||||    
T  199556 atatgagaaatgtaaaatgaggtgtacctttacataggtgaaatacgtaggaggaggtgtaatcttac 199623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 305
Target Start/End: Original strand, 200826 - 200860
Alignment:
Q  271 accacatgcatctagatgagtctagaacattgcat 305  Q
    |||||||||||||||| ||||||||||||||||||    
T  200826 accacatgcatctagaggagtctagaacattgcat 200860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 7e-50; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 57 - 223
Target Start/End: Complemental strand, 14617919 - 14617754
Alignment:
Q  57 attggaggtgtacttttacattgtttgt-gattatatagttggtgttagacggattgtcgagtcttacttgaagtccatgcatcatagtcatattgagtc 155  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||| || ||||||||||||||  ||| ||||||||||||  |||||||||||||    
T  14617919 attggaggtgtacttttacattgtttggcgattatatagttggtgttaggcgcattgtcgagtcttatgtgacgtccatgcatca--gtcatattgagtc 14617822  T
Q  156 atatgagaaatgtaaaaggagatgtacttttacataggtgaaatacatgggaggaggtgtactcttac 223  Q
    ||||||||||||||||| ||| ||||| |||||||||||||||||| | |||||||||||| ||||||    
T  14617821 atatgagaaatgtaaaatgaggtgtacctttacataggtgaaatacgtaggaggaggtgtaatcttac 14617754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 57 - 190
Target Start/End: Original strand, 18420298 - 18420434
Alignment:
Q  57 attggaggtgtacttttacattgttt--gtgattatatagttggtgttagacggattgtcgagtcttacttgaagtccatgca-tcatagtcatattgag 153  Q
    ||||||||||||||||||||||| ||  |||| |||||||||| ||||||  | ||||||||||||||||||||||||||||| |||||||||| |||||    
T  18420298 attggaggtgtacttttacattgctttggtgaatatatagttgatgttaggtgcattgtcgagtcttacttgaagtccatgcattcatagtcatgttgag 18420397  T
Q  154 tcatatgagaaatgtaaaaggagatgtacttttacat 190  Q
    || |||||  |||||||| |||| |||| ||||||||    
T  18420398 tcttatgatgaatgtaaatggaggtgtaattttacat 18420434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 271 - 416
Target Start/End: Original strand, 18667805 - 18667951
Alignment:
Q  271 accacatgcatctagatgagtctagaacattgcatacatttattgattaactaatcgagtcat-acttgaatatgtgaatcggtgtatatgtgcattggt 369  Q
    |||||||||||||||| |||| |||||||||||||  | |||||  ||    | ||||||| | ||||||||||||||||| || |||||||||||||||    
T  18667805 accacatgcatctagaagagtatagaacattgcatgtacttattacttggtgagtcgagtccttacttgaatatgtgaatcagtatatatgtgcattggt 18667904  T
Q  370 gaatttttggtgattgtcgtgaatacttgaacaaagtgaattgtatg 416  Q
    ||| ||||||||||||| ||||||||||| ||||  |||||| ||||    
T  18667905 gaacttttggtgattgttgtgaatacttgcacaagatgaattatatg 18667951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 12732854 - 12732791
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||    
T  12732854 gtccatgcatcatagtcatatcgagtcatatgagaaatgtaaaagaaggtgtacttttacatag 12732791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 333 - 416
Target Start/End: Original strand, 18713540 - 18713623
Alignment:
Q  333 tacttgaatatgtgaatcggtgtatatgtgcattggtgaatttttggtgattgtcgtgaatacttgaacaaagtgaattgtatg 416  Q
    |||||| |||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||| ||||  |||||| ||||    
T  18713540 tacttggatatgtgaatcggtatatatgtgcattggtgaacttttggtgattgttgtgaatacttgcacaagatgaattatatg 18713623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 328 - 415
Target Start/End: Complemental strand, 5889832 - 5889743
Alignment:
Q  328 agtcatacttgaatat--gtgaatcggtgtatatgtgcattggtgaatttttggtgattgtcgtgaatacttgaacaaagtgaattgtat 415  Q
    ||||||||||||||||  ||||||| ||||||||||||||||||||| |||||||||| |||||||||||| ||| || |||||| ||||    
T  5889832 agtcatacttgaatatatgtgaatcagtgtatatgtgcattggtgaaattttggtgatcgtcgtgaatactcgaaaaaggtgaatagtat 5889743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 152 - 311
Target Start/End: Complemental strand, 19076452 - 19076291
Alignment:
Q  152 agtcatatgagaaatgtaaaaggagatgtacttttacataggtgaaatacatgggaggaggtgtactcttacgtgagtgtgtattcaa-actgtaa-att 249  Q
    ||||||||||| ||||||||||||| |||| |||||| || ||||||||| |  |||||| |||||||||| ||| ||||| |||||| || |||| |||    
T  19076452 agtcatatgaggaatgtaaaaggaggtgtatttttacgtatgtgaaatacgtaagaggagatgtactcttatgtgggtgtggattcaatacagtaatatt 19076353  T
Q  250 atcttcggactcctatatggcaccacatgcatct--agatgagtctagaacattgcatacattt 311  Q
    |||| |||| |||   |||| |||||||||||||  |||  ||||||||||||||||| |||||    
T  19076352 atctccggaatcc--aatggtaccacatgcatctaaagaaaagtctagaacattgcatgcattt 19076291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 325 - 417
Target Start/End: Complemental strand, 12415293 - 12415209
Alignment:
Q  325 tcgagtcatacttgaatatgtgaatcggtgtatatgtgcattggtgaatttttggtgattgtcgtgaatacttgaacaaagtgaattgtatgc 417  Q
    |||||||||||||| |||||||||||||||||||||||        |||||||||||||||| | ||||||| ||| ||||||||||||||||    
T  12415293 tcgagtcatacttggatatgtgaatcggtgtatatgtg--------aatttttggtgattgttgcgaatactcgaaaaaagtgaattgtatgc 12415209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 42707452 - 42707399
Alignment:
Q  137 atcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacat 190  Q
    ||||||||||||| |||||||||| ||||||||||||||| |||||||||||||    
T  42707452 atcatagtcatatcgagtcatatgtgaaatgtaaaaggaggtgtacttttacat 42707399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 129 - 192
Target Start/End: Original strand, 7187397 - 7187460
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    ||||||||||  | ||||||| |||||||||| |||||| ||||||||||||||||||||||||    
T  7187397 gtccatgcatattcgtcatatcgagtcatatgtgaaatggaaaaggagatgtacttttacatag 7187460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 38763490 - 38763427
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    ||||||||||||| |||||||   |||||||| ||||||||||||||| |||||||||||||||    
T  38763490 gtccatgcatcattgtcatatcatgtcatatgtgaaatgtaaaaggaggtgtacttttacatag 38763427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 190
Target Start/End: Original strand, 10115854 - 10115918
Alignment:
Q  127 aagtccatgcat-catagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacat 190  Q
    |||||||||||| ||||||||||||||||| |||||  |||||||| |||| |||||||||||||    
T  10115854 aagtccatgcattcatagtcatattgagtcttatgaagaatgtaaatggaggtgtacttttacat 10115918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 18275526 - 18275463
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    |||||| ||| || ||||||| ||||||||||| ||||| |||||||| |||||||||||||||    
T  18275526 gtccatacattattgtcatatcgagtcatatgataaatggaaaaggaggtgtacttttacatag 18275463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 11774879 - 11774843
Alignment:
Q  276 atgcatctagatgagtctagaacattgcatacattta 312  Q
    |||||||||||||||||||||||||||||| ||||||    
T  11774879 atgcatctagatgagtctagaacattgcatgcattta 11774843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 305
Target Start/End: Complemental strand, 14616551 - 14616517
Alignment:
Q  271 accacatgcatctagatgagtctagaacattgcat 305  Q
    |||||||||||||||| ||||||||||||||||||    
T  14616551 accacatgcatctagaggagtctagaacattgcat 14616517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 310
Target Start/End: Original strand, 15676507 - 15676545
Alignment:
Q  272 ccacatgcatctagatgagtctagaacattgcatacatt 310  Q
    ||||||||||||||| |||||||||||||||||| ||||    
T  15676507 ccacatgcatctagaggagtctagaacattgcatgcatt 15676545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 372
Target Start/End: Complemental strand, 20847440 - 20847339
Alignment:
Q  271 accacatgcatctagatgagtctagaacattgcatacatttattgattaactaatcgagtcatacttgaatatgtgaatcggtgtatatgtgcattggtg 370  Q
    |||||||| ||||||| |||||||||||||||||| |||||  | |||    || || ||||||||||| |||||| || ||||  ||||||||||| ||    
T  20847440 accacatgtatctagaagagtctagaacattgcatgcatttgatcattggtgaaacgtgtcatacttgactatgtgtattggtgattatgtgcattgatg 20847341  T
Q  371 aa 372  Q
    ||    
T  20847340 aa 20847339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 401
Target Start/End: Complemental strand, 11774822 - 11774762
Alignment:
Q  341 tatgtgaatcggtgtatatgtgcattggtgaatttttggtgattgtcgtgaatacttgaac 401  Q
    |||||||||| ||||||||||||||||||| | ||||| ||||  | ||||||| ||||||    
T  11774822 tatgtgaatcagtgtatatgtgcattggtggacttttgttgatgattgtgaatatttgaac 11774762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 396
Target Start/End: Complemental strand, 17957577 - 17957534
Alignment:
Q  352 gtgtatatgtgcattggtgaatttttggtgattgtcgtgaatact 396  Q
    |||| |||||||||||||||| ||||||||||||| |||||||||    
T  17957577 gtgtgtatgtgcattggtgaa-ttttggtgattgttgtgaatact 17957534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 303
Target Start/End: Complemental strand, 17958522 - 17958490
Alignment:
Q  271 accacatgcatctagatgagtctagaacattgc 303  Q
    |||||||||||||||| ||||||||||||||||    
T  17958522 accacatgcatctagacgagtctagaacattgc 17958490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 311
Target Start/End: Original strand, 19699238 - 19699274
Alignment:
Q  275 catgcatctagatgagtctagaacattgcatacattt 311  Q
    |||||||||||| |||||||||||||||||| |||||    
T  19699238 catgcatctagaagagtctagaacattgcatgcattt 19699274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 311
Target Start/End: Original strand, 19709823 - 19709859
Alignment:
Q  275 catgcatctagatgagtctagaacattgcatacattt 311  Q
    |||||||||||| |||||||||||||||||| |||||    
T  19709823 catgcatctagaagagtctagaacattgcatgcattt 19709859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 401
Target Start/End: Complemental strand, 21958629 - 21958569
Alignment:
Q  341 tatgtgaatcggtgtatatgtgcattggtgaatttttggtgattgtcgtgaatacttgaac 401  Q
    ||||||||| |||||| ||||||||||||| | ||||| |||| || ||||||| ||||||    
T  21958629 tatgtgaattggtgtaaatgtgcattggtggacttttgttgatggttgtgaatatttgaac 21958569  T

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Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 311
Target Start/End: Original strand, 40902370 - 40902406
Alignment:
Q  275 catgcatctagatgagtctagaacattgcatacattt 311  Q
    |||||||||||| |||||||||||||||||| |||||    
T  40902370 catgcatctagaagagtctagaacattgcatgcattt 40902406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 311
Target Start/End: Original strand, 41918420 - 41918456
Alignment:
Q  275 catgcatctagatgagtctagaacattgcatacattt 311  Q
    |||||||||||| |||||||||||||||||| |||||    
T  41918420 catgcatctagaagagtctagaacattgcatgcattt 41918456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 95; Significance: 3e-46; HSPs: 2)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 57 - 223
Target Start/End: Original strand, 3893 - 4059
Alignment:
Q  57 attggaggtgtacttttacattgttt--gtgattatatagttggtgttagacggattgtcgagtcttacttgaagtccatgcatcatagtcatattgagt 154  Q
    ||||||||||||||||||| ||| ||  ||||||||||||||||||||||  | ||| |||||||||||||||| |||||||||||  |||||||| |||    
T  3893 attggaggtgtacttttacgttgctttggtgattatatagttggtgttaggtgcattttcgagtcttacttgaattccatgcatca--gtcatattaagt 3990  T
Q  155 catatgagaaatgtaaaaggagatgtacttttacataggtgaaatacatgggaggaggtgtactcttac 223  Q
    |||||||||||||||||||||  |||||||||||||||||||||||| |  ||||||||||||||||||    
T  3991 catatgagaaatgtaaaaggatgtgtacttttacataggtgaaatacgtaagaggaggtgtactcttac 4059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 167 - 305
Target Start/End: Original strand, 4038 - 4176
Alignment:
Q  167 gtaaaaggagatgtacttttacataggtgaaatacatgggaggaggtgtactcttacgtgagtgtgtattcaaactgt-aaattatcttcggactcctat 265  Q
    |||| ||||| |||||| ||||||||||||||||| |  ||||| |||||||||||||||  |||| ||||| || || ||||||||  |  | ||| |     
T  4038 gtaagaggaggtgtactcttacataggtgaaatacgtaagaggatgtgtactcttacgtggatgtggattcatacggtaaaattatccccataatcc-aa 4136  T
Q  266 atggcaccacatgcatctagatgagtctagaacattgcat 305  Q
    |||| |||||||||||||||| |||||||||| |||||||    
T  4137 atggtaccacatgcatctagaagagtctagaatattgcat 4176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 1e-39; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 273 - 400
Target Start/End: Original strand, 8853552 - 8853679
Alignment:
Q  273 cacatgcatctagatgagtctagaacattgcatacatttattgattaactaatcgagtcatacttgaatatgtgaatcggtgtatatgtgcattggtgaa 372  Q
    ||||| ||||||||||||||||||||||||||| |||||| | |||    | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8853552 cacatacatctagatgagtctagaacattgcatgcatttaataattggtgagtcgagtcatacttgaatatgtgaatcggtgtatatgtgcattggtgaa 8853651  T
Q  373 tttttggtgattgtcgtgaatacttgaa 400  Q
     ||||||||||||| |||||||||||||    
T  8853652 cttttggtgattgttgtgaatacttgaa 8853679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 109 - 311
Target Start/End: Complemental strand, 27050443 - 27050239
Alignment:
Q  109 attgtcgagtctt-acttgaa-gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaaatacatggg 206  Q
    ||||||||||||| ||||| | |||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||| |  |    
T  27050443 attgtcgagtctttacttgtatgtccatgcatcatagtcatattaagtcatatgagaaatgtaaaaagaggtgtacttttacataggtgaaatacgtaag 27050344  T
Q  207 aggaggtgtactcttacgtgagtgtgtattcaa-actgtaa-attatcttcggactcctatatggcaccacatgcatctagatgagtctagaacattgca 304  Q
    |||| ||||||||||||||| ||||| |||||| || |||| ||||| |||||| |||   |||| || |||||||||||||  ||| ||||||||||||    
T  27050343 aggatgtgtactcttacgtgggtgtggattcaatacggtaagattattttcggaatcc--aatggtactacatgcatctagaatagtatagaacattgca 27050246  T
Q  305 tacattt 311  Q
    | |||||    
T  27050245 tgcattt 27050239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 276 - 453
Target Start/End: Complemental strand, 10725016 - 10724833
Alignment:
Q  276 atgcatctagatgagtctagaacattgcatacatttattgattaactaatcgagtcatacttgaatatgtgaatcggtgtatatgtgcattggtgaattt 375  Q
    |||||||||||||||||||||| |||||||  ||||||  |||    | ||||||| ||||||| || ||||||| ||||||||||||||||||||| ||    
T  10725016 atgcatctagatgagtctagaatattgcatgaatttatctattggtgagtcgagtcgtacttgattacgtgaatctgtgtatatgtgcattggtgaa-tt 10724918  T
Q  376 ttggtgattgtcgtgaatacttgaacaaagtgaattgtatg-------cgattgtggttgtatacttgtggacttatgatgatgt 453  Q
    ||||||||||| | ||||||||||| || |||||| |||||       |||||||| ||||||||||||||||||||||||||||    
T  10724917 ttggtgattgttgcgaatacttgaaaaaggtgaatcgtatgcattactcgattgtgtttgtatacttgtggacttatgatgatgt 10724833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 129 - 197
Target Start/End: Original strand, 17759919 - 17759987
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaa 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17759919 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatagttgaa 17759987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 129 - 197
Target Start/End: Original strand, 19061239 - 19061307
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaa 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19061239 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatagttgaa 19061307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 266 - 396
Target Start/End: Original strand, 16220351 - 16220481
Alignment:
Q  266 atggcaccacatgcatctagatgagtctagaacattgcatacatttattgattaactaatcgagtcatacttgaatatgtgaatcggtgtatatgtgcat 365  Q
    |||| ||||||||||||||||| |||||| |||||||||| |||||| | |||    | |||||| ||||||| ||||||||||| ||||||| ||||||    
T  16220351 atggtaccacatgcatctagataagtctaaaacattgcatgcatttaataattggtgagtcgagtaatacttggatatgtgaatcagtgtataagtgcat 16220450  T
Q  366 tggtgaatttttggtgattgtcgtgaatact 396  Q
    ||||||| || |||||||||| |||||||||    
T  16220451 tggtgaacttctggtgattgttgtgaatact 16220481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 265 - 416
Target Start/End: Complemental strand, 13438600 - 13438448
Alignment:
Q  265 tatggcaccacatgcatctagatgagtctagaacattgcatacat--ttattgattaactaatcgagtcatacttgaatatgtgaatcggtgtatatgtg 362  Q
    ||||| |||||||||||||||| |||||||||||||||||| |||  |||||  ||   || ||||||| ||||||| || |||||| |||||||| |||    
T  13438600 tatggtaccacatgcatctagaagagtctagaacattgcatgcatatttattatttgggtagtcgagtcgtacttgattacgtgaattggtgtatacgtg 13438501  T
Q  363 cattggtgaatttttggtgattgtcgtgaatacttgaacaaagtgaattgtatg 416  Q
    ||||||||||  ||||||||  || |||||||||||||||| ||||| ||||||    
T  13438500 cattggtgaa-atttggtgaccgttgtgaatacttgaacaaggtgaactgtatg 13438448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 131 - 192
Target Start/End: Original strand, 17320068 - 17320129
Alignment:
Q  131 ccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  17320068 ccatgcatcatagtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 17320129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 129 - 192
Target Start/End: Original strand, 4163673 - 4163736
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  4163673 gtccatgcatcatcgtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 4163736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 18968799 - 18968736
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  18968799 gtccatgcatcattgtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 18968736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 129 - 192
Target Start/End: Original strand, 43429026 - 43429089
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||    
T  43429026 gtccatgcatcatagtcatatcgagtcatatgagaaatgtaaaaggaagtgtacttttacatag 43429089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 129 - 191
Target Start/End: Original strand, 21168206 - 21168268
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacata 191  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||    
T  21168206 gtccatgcatcataatcatattgagtcatatgagaaatgtaaaaggaggtgtatttttacata 21168268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 277 - 385
Target Start/End: Original strand, 19633441 - 19633550
Alignment:
Q  277 tgcatctagatgagtctagaacattgcatacattt-attgattaactaatcgagtcatacttgaatatgtgaatcggtgtatatgtgcattggtgaattt 375  Q
    ||||||||||||||||||||||||||||| ||| | ||| |||    | |||||||| ||||  |||||||||| |||||||||||||||||||||| ||    
T  19633441 tgcatctagatgagtctagaacattgcatgcatatgattcattggtgagtcgagtcaaactttgatatgtgaattggtgtatatgtgcattggtgaaatt 19633540  T
Q  376 ttggtgattg 385  Q
    ||||||||||    
T  19633541 ttggtgattg 19633550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 129 - 192
Target Start/End: Original strand, 4147166 - 4147229
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    ||||||||||||| ||||||| |||||||||||||||| ||||||||| |||||||||||||||    
T  4147166 gtccatgcatcatcgtcatatcgagtcatatgagaaatttaaaaggaggtgtacttttacatag 4147229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 129 - 192
Target Start/End: Original strand, 14817185 - 14817248
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||| || ||||||||||    
T  14817185 gtccatgcatcatcgtcatatcgagtcatatgagaaatgtaaaaggagatatatttttacatag 14817248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 129 - 192
Target Start/End: Original strand, 25105454 - 25105517
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    |||||||  |||||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  25105454 gtccatgtttcatagtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 25105517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 129 - 192
Target Start/End: Original strand, 6230122 - 6230188
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggag---atgtacttttacatag 192  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||   ||||||||||||||||    
T  6230122 gtccatgcatcatcgtcatatcgagtcatatgagaaatgtaaaaggaggtcatgtacttttacatag 6230188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 34558570 - 34558515
Alignment:
Q  136 catcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacata 191  Q
    |||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  34558570 catcattgtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacata 34558515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 153 - 192
Target Start/End: Complemental strand, 12020644 - 12020605
Alignment:
Q  153 gtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  12020644 gtcatatgagaaatgtaaaaggaggtgtacttttacatag 12020605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 153 - 192
Target Start/End: Complemental strand, 17203359 - 17203320
Alignment:
Q  153 gtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  17203359 gtcatatgagaaatgtaaaaggaggtgtacttttacatag 17203320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 245 - 311
Target Start/End: Original strand, 2548038 - 2548105
Alignment:
Q  245 aaattatcttcggactcctatatggcaccacatgcatctagat--gagtctagaacattgcatacattt 311  Q
    |||||||||||||| ||||| |||| ||||||||||||||||   |||| |||||||||||||||||||    
T  2548038 aaattatcttcggaatccta-atggtaccacatgcatctagagaagagtatagaacattgcatacattt 2548105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 266 - 311
Target Start/End: Complemental strand, 11401124 - 11401079
Alignment:
Q  266 atggcaccacatgcatctagatgagtctagaacattgcatacattt 311  Q
    |||| |||||||||||||||| |||||||||||||||||| |||||    
T  11401124 atggtaccacatgcatctagaagagtctagaacattgcatgcattt 11401079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 271 - 311
Target Start/End: Complemental strand, 17385391 - 17385351
Alignment:
Q  271 accacatgcatctagatgagtctagaacattgcatacattt 311  Q
    |||||||||||||||| |||||||||||||||||| |||||    
T  17385391 accacatgcatctagaagagtctagaacattgcatgcattt 17385351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 54040208 - 54040248
Alignment:
Q  271 accacatgcatctagatgagtctagaacattgcatacattt 311  Q
    |||||||||||||||| |||||||||||||||||| |||||    
T  54040208 accacatgcatctagaagagtctagaacattgcatgcattt 54040248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 54049495 - 54049535
Alignment:
Q  271 accacatgcatctagatgagtctagaacattgcatacattt 311  Q
    |||||||||||||||| |||||||||||||||||| |||||    
T  54049495 accacatgcatctagaagagtctagaacattgcatgcattt 54049535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 307
Target Start/End: Original strand, 12254393 - 12254453
Alignment:
Q  245 aaattatcttcggactcctatatggcaccacatgcatctagatgagtctagaacattgcatac 307  Q
    ||||||||| |||| ||||||  || ||||||||||| |||| ||||||||||||||||||||    
T  12254393 aaattatctccggaatcctat--ggtaccacatgcatttagaagagtctagaacattgcatac 12254453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 305
Target Start/End: Complemental strand, 6808955 - 6808921
Alignment:
Q  271 accacatgcatctagatgagtctagaacattgcat 305  Q
    |||||||||||||||| ||||||||||||||||||    
T  6808955 accacatgcatctagaagagtctagaacattgcat 6808921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 310
Target Start/End: Original strand, 25606936 - 25606974
Alignment:
Q  272 ccacatgcatctagatgagtctagaacattgcatacatt 310  Q
    ||||||||||||||| |||||||||||||||||| ||||    
T  25606936 ccacatgcatctagaggagtctagaacattgcatgcatt 25606974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 312
Target Start/End: Original strand, 31413915 - 31413952
Alignment:
Q  275 catgcatctagatgagtctagaacattgcatacattta 312  Q
    |||||||||||| |||||||||||||||||| ||||||    
T  31413915 catgcatctagaagagtctagaacattgcatgcattta 31413952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 192
Target Start/End: Complemental strand, 15549212 - 15549172
Alignment:
Q  152 agtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    ||||||||| ||||||||||||||| |||| ||||||||||    
T  15549212 agtcatatgtgaaatgtaaaaggaggtgtatttttacatag 15549172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 311
Target Start/End: Original strand, 15551132 - 15551168
Alignment:
Q  275 catgcatctagatgagtctagaacattgcatacattt 311  Q
    |||||||||||| |||||||||||||||||| |||||    
T  15551132 catgcatctagaagagtctagaacattgcatgcattt 15551168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 311
Target Start/End: Complemental strand, 17391880 - 17391840
Alignment:
Q  271 accacatgcatctagatgagtctagaacattgcatacattt 311  Q
    |||||||||||||||| |||||| ||||||||||| |||||    
T  17391880 accacatgcatctagaagagtcttgaacattgcatgcattt 17391840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 25105585 - 25105625
Alignment:
Q  271 accacatgcatctagatgagtctagaacattgcatacattt 311  Q
    |||||||||| ||||| |||||||||||||||||| |||||    
T  25105585 accacatgcacctagaggagtctagaacattgcatgcattt 25105625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 143 - 400
Target Start/End: Complemental strand, 79493 - 79238
Alignment:
Q  143 gtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaaatacatgggaggaggtgtactcttacgtgagtgtgtattcaaact 242  Q
    |||||||||||||||||||||||||||||||||| |||||| | |||||||| |||||| | | |||||||  ||||||||||| |||||  |||||||     
T  79493 gtcatattgagtcatatgagaaatgtaaaaggaggtgtactatcacataggtaaaatacgtagaaggaggt-cactcttacgtgggtgtgggttcaaacg 79395  T
Q  243 gt-aaattatcttcggactcctatatggcaccacatgcatctagatgagtctagaacattgcatacatttattgattaactaatcgagtcatacttgaat 341  Q
    || ||||| |||||||| ||    |||| |||| |||||||||||||| ||||||||||||||  ||||| || |||    ||| |||||||||||| ||    
T  79394 gtaaaattgtcttcggaatc--gaatggtaccagatgcatctagatgaatctagaacattgcacgcatttgttaattggtgaattgagtcatacttggat 79297  T
Q  342 atgtgaatcggtgtatatgtgcattggtgaatttttggtgattgtcgtgaatacttgaa 400  Q
    | ||||||| |||| | |||||||||| |||| |||||||| | | |||||||||||||    
T  79296 acgtgaatcagtgtttctgtgcattggcgaatgtttggtgactattgtgaatacttgaa 79238  T

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Target: scaffold0219 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 5 - 192
Target Start/End: Original strand, 25302 - 25491
Alignment:
Q  5 tctgcaatagccattaaattaaattaaaaagtaatttaaatatctttgcattattggaggtgtacttttacattgtttgtgattatatagttggtg-tta 103  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  || ||| ||  || ||  ||    
T  25302 tctgcaattgccattaaattaaattaaaaagtaatttaaatatctttgcattattggaggtgtacttttacattgtgttggagtatgtatatgttgagta 25401  T
Q  104 g-acggattgtcgagtcttacttgaagtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    |   | ||| | |||||||   | | ||| ||||||||| ||||||| |||||||||||||||||||||||||| |||| ||||||||||    
T  25402 gtttgcattattgagtctttgcttatgtcgatgcatcattgtcatatcgagtcatatgagaaatgtaaaaggaggtgtaattttacatag 25491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 266 - 417
Target Start/End: Complemental strand, 1560448 - 1560297
Alignment:
Q  266 atggcaccacatgcatctagatgagtctagaacattgcatacatttattgattaactaatcgagtcatacttgaatatgtgaatcggtgtatatgtgcat 365  Q
    |||| |||||||| || |||| |||||||||||||||||  || || || ||| |  ||||||||||||||||||||||  |||| ||||||||||||||    
T  1560448 atggtaccacatgtatatagaagagtctagaacattgcaagcaattgttaattgatgaatcgagtcatacttgaatatgcaaatcagtgtatatgtgcat 1560349  T
Q  366 tggtgaatttttggtgattgtcgtgaatacttgaacaaagtgaattgtatgc 417  Q
    |||||||| |||||||||||| |||||| |||||  ||||||||||||||||    
T  1560348 tggtgaatgtttggtgattgttgtgaattcttgagaaaagtgaattgtatgc 1560297  T

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Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 129 - 314
Target Start/End: Original strand, 5485823 - 5486007
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaaatacatgggaggaggtgtactcttacgtgag 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| |||||||||  ||||||| |||| ||||||  |    
T  5485823 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggatgtgtacttttacataggtcaaatacatgaaaggaggtatacttttacgttgg 5485922  T
Q  229 tgtgtattcaaactgt-aaattatcttcggactcctatatggcaccacatgcatctagatgagtctagaacattgcatacatttatt 314  Q
    |||| ||||  || || |||||||||| ||| |  |  || | |||||||||| ||||| ||| |||||||||||||| || |||||    
T  5485923 tgtggattcgtacggtaaaattatcttaggaat--tcaattgtaccacatgcacctagaagagactagaacattgcatgcacttatt 5486007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 129 - 197
Target Start/End: Original strand, 4173162 - 4173230
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaa 197  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  4173162 gtccatgcatcatagtcatattgagtcatatgagaagtgtaaaaggagatgtacttttacataggtgaa 4173230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 129 - 197
Target Start/End: Original strand, 4228771 - 4228839
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaa 197  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  4228771 gtccatgcatcatagtcatattgagtcatatgagaagtgtaaaaggaggtgtacttttacataggtgaa 4228839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 129 - 197
Target Start/End: Original strand, 29161995 - 29162063
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaa 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  29161995 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaagaagatgtacttttacatagttgaa 29162063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 32350783 - 32350720
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  32350783 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgcacttttacatag 32350720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 129 - 192
Target Start/End: Original strand, 15006140 - 15006203
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  15006140 gtccatgcatcatagtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 15006203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 129 - 197
Target Start/End: Original strand, 11374336 - 11374404
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaa 197  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||    
T  11374336 gtccatacatcatagtcatattgagtcatatgagaaatgtaaaaggaggtgtccttttacatagttgaa 11374404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 265 - 395
Target Start/End: Original strand, 19728996 - 19729127
Alignment:
Q  265 tatggcaccacatgcatctagatgagtctagaacattgcatacatttattgattaactaatcgagtcat-acttgaatatgtgaatcggtgtatatgtgc 363  Q
    ||||| |||||||||||||||| |||||||||||||||||| || ||||| |||    | ||||||| | |||||||||||||||||||||| ||||||     
T  19728996 tatggtaccacatgcatctagaagagtctagaacattgcatgcacttattaattggtgagtcgagtctttacttgaatatgtgaatcggtgtgtatgtgt 19729095  T
Q  364 attggtgaatttttggtgattgtcgtgaatac 395  Q
    |||| | || ||||||||||||| ||| ||||    
T  19729096 attgctaaacttttggtgattgttgtggatac 19729127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 29604270 - 29604207
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  29604270 gtccatgcatcatcgtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 29604207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 133 - 197
Target Start/End: Original strand, 17375241 - 17375305
Alignment:
Q  133 atgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaa 197  Q
    |||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||| ||||    
T  17375241 atgcatcatattcatattgagtcatatgagaaatgtaaaaggaggtctacttttacatagttgaa 17375305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 129 - 192
Target Start/End: Original strand, 18631100 - 18631163
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    ||||||||||||| ||||||| |||||||||| ||||||||||||||| ||| |||||||||||    
T  18631100 gtccatgcatcatcgtcatatcgagtcatatgtgaaatgtaaaaggaggtgttcttttacatag 18631163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 208 - 305
Target Start/End: Complemental strand, 24217457 - 24217359
Alignment:
Q  208 ggaggtgtactcttacgtgagtgtgtattcaa-actgtaaa-ttatcttcggactcctatatggcaccacatgcatctagatgagtctagaacattgcat 305  Q
    ||||||||||||||||||||||||| ||| || |||||||| ||||||   || |||||| ||| ||||||||||| |||| ||||||||||||||||||    
T  24217457 ggaggtgtactcttacgtgagtgtggatttaatactgtaaaattatctatagaatcctat-tggtaccacatgcatttagaagagtctagaacattgcat 24217359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 325 - 372
Target Start/End: Complemental strand, 10973292 - 10973245
Alignment:
Q  325 tcgagtcatacttgaatatgtgaatcggtgtatatgtgcattggtgaa 372  Q
    ||||||||||||||| ||||||||| |||||||| |||||||||||||    
T  10973292 tcgagtcatacttgattatgtgaattggtgtatacgtgcattggtgaa 10973245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 265 - 314
Target Start/End: Complemental strand, 12975074 - 12975025
Alignment:
Q  265 tatggcaccacatgcatctagatgagtctagaacattgcatacatttatt 314  Q
    ||||| ||||||||||||||||   |||||||||||||||||||||||||    
T  12975074 tatggtaccacatgcatctagaaatgtctagaacattgcatacatttatt 12975025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 192
Target Start/End: Complemental strand, 21621820 - 21621781
Alignment:
Q  153 gtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    |||||||| ||||||||||||||| |||||||||||||||    
T  21621820 gtcatatgtgaaatgtaaaaggaggtgtacttttacatag 21621781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 192
Target Start/End: Original strand, 22363687 - 22363726
Alignment:
Q  153 gtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    ||||||||| |||||||||||||||||| |||||||||||    
T  22363687 gtcatatgaaaaatgtaaaaggagatgttcttttacatag 22363726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 190
Target Start/End: Original strand, 14874942 - 14875023
Alignment:
Q  109 attgtcgagtcttacttgaagtccatgcat-catagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacat 190  Q
    ||||||||||||  |||||||||||||||| |||| |||| ||||||| |||||  |||||||| |||| | |||||||||||    
T  14874942 attgtcgagtctg-cttgaagtccatgcattcatattcatgttgagtcttatgaagaatgtaaatggaggtttacttttacat 14875023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 195
Target Start/End: Complemental strand, 25918373 - 25918331
Alignment:
Q  153 gtcatatgagaaatgtaaaaggagatgtacttttacataggtg 195  Q
    ||||| || ||||||||||||||| ||||||||||||||||||    
T  25918373 gtcatttgtgaaatgtaaaaggaggtgtacttttacataggtg 25918331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 159
Target Start/End: Original strand, 31162373 - 31162403
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatat 159  Q
    |||||||||||||||||||||||||||||||    
T  31162373 gtccatgcatcatagtcatattgagtcatat 31162403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 12466181 - 12466221
Alignment:
Q  271 accacatgcatctagatgagtctagaacattgcatacattt 311  Q
    ||||||| |||||||| |||||||||||||||||| |||||    
T  12466181 accacatacatctagaagagtctagaacattgcatgcattt 12466221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 311
Target Start/End: Complemental strand, 16374917 - 16374881
Alignment:
Q  275 catgcatctagatgagtctagaacattgcatacattt 311  Q
    |||||||||||| |||||||||||||||||| |||||    
T  16374917 catgcatctagaagagtctagaacattgcatgcattt 16374881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 160
Target Start/End: Complemental strand, 16375064 - 16375036
Alignment:
Q  132 catgcatcatagtcatattgagtcatatg 160  Q
    |||||||||||||||||||||||||||||    
T  16375064 catgcatcatagtcatattgagtcatatg 16375036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 311
Target Start/End: Complemental strand, 19627866 - 19627830
Alignment:
Q  275 catgcatctagatgagtctagaacattgcatacattt 311  Q
    |||||||||||| |||||||||||||||||| |||||    
T  19627866 catgcatctagaagagtctagaacattgcatgcattt 19627830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 311
Target Start/End: Original strand, 22595128 - 22595164
Alignment:
Q  275 catgcatctagatgagtctagaacattgcatacattt 311  Q
    |||||||||||| |||||||||||||||||| |||||    
T  22595128 catgcatctagaagagtctagaacattgcatgcattt 22595164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 311
Target Start/End: Original strand, 31162523 - 31162559
Alignment:
Q  275 catgcatctagatgagtctagaacattgcatacattt 311  Q
    |||||||||||| |||||||||||||||||| |||||    
T  31162523 catgcatctagaagagtctagaacattgcatgcattt 31162559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 311
Target Start/End: Original strand, 35010948 - 35010984
Alignment:
Q  275 catgcatctagatgagtctagaacattgcatacattt 311  Q
    |||||||||||| |||||||||||||||||| |||||    
T  35010948 catgcatctagaagagtctagaacattgcatgcattt 35010984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 21108239 - 21108171
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaa 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  21108239 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggaggtgtacttttacatagttgaa 21108171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 129 - 192
Target Start/End: Original strand, 26561277 - 26561340
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  26561277 gtccatgcatcataatcatattgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 26561340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 6455382 - 6455319
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||    
T  6455382 gtccatgcatcatagtcataacgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 6455319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 29912761 - 29912698
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  29912761 gtccatgcatcatcgtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 29912698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 129 - 191
Target Start/End: Original strand, 5622919 - 5622981
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacata 191  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||    
T  5622919 gtccatgcatcataatcatattgagtcatatgagaaatgtaaaaggaggtgtatttttacata 5622981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 111 - 305
Target Start/End: Complemental strand, 37278276 - 37278075
Alignment:
Q  111 tgtcgagtcttacttgaagtccatgca-tcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag-----gtgaaatacatg 204  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||| |||||  |||||||  |||  |||||||||| || |     ||||||||| |     
T  37278276 tgtcgagtcttacttgaagtccatgcattcatagtcatgttgagtcttatgacgaatgtaactggacgtgtacttttatattgcgttagtgaaatacgta 37278177  T
Q  205 ggaggaggtgtactcttacgtgagtgtgtattcaa-actgt-aaattatcttcggactcctatatggcaccacatgcatctagatgagtctagaacattg 302  Q
     | ||||||||||||||||||| ||||| ||||||  |||| ||||||||| |||| ||| || ||| ||||| || ||||| | |||||||||||||||    
T  37278176 agtggaggtgtactcttacgtgggtgtggattcaatgctgtaaaattatctccggaatccaat-tggtaccacgtgtatctaaaagagtctagaacattg 37278078  T
Q  303 cat 305  Q
    |||    
T  37278077 cat 37278075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 245 - 365
Target Start/End: Complemental strand, 25340995 - 25340876
Alignment:
Q  245 aaattatcttcggactcctatatggcaccacatgcatctagatgagtctagaacattgcatacatttattgattaactaatcgagtcatacttgaatatg 344  Q
    |||||||||  ||| ||||| |||| ||||||||||||||||||||||||||||||||||| ||||| || |||    | |||||||||||||| |||||    
T  25340995 aaattatctctggaatccta-atggtaccacatgcatctagatgagtctagaacattgcatgcatttgttaattggtgagtcgagtcatacttggatatg 25340897  T
Q  345 tgaatcggtgtatatgtgcat 365  Q
    | ||| ||||| |||||||||    
T  25340896 tcaattggtgtgtatgtgcat 25340876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 24082818 - 24082755
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    ||||||||||||| ||||||| ||||| |||||||||||||||||||| |||||||||||||||    
T  24082818 gtccatgcatcatcgtcatatcgagtcgtatgagaaatgtaaaaggaggtgtacttttacatag 24082755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 265 - 366
Target Start/End: Original strand, 19318119 - 19318220
Alignment:
Q  265 tatggcaccacatgcatctagatgagtctagaacattgcatacatttattgattaactaatcgagtcatacttgaatatgtgaatcggtgtatatgtgca 364  Q
    ||||| |||||||||||||||| |||||||||||||| ||| ||||||||  ||    | ||||||| ||||||| |||||| || |||||||| |||||    
T  19318119 tatggtaccacatgcatctagaagagtctagaacattacatgcatttattatttggtgagtcgagtcgtacttgattatgtgtattggtgtatacgtgca 19318218  T
Q  365 tt 366  Q
    ||    
T  19318219 tt 19318220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 372
Target Start/End: Complemental strand, 19266867 - 19266820
Alignment:
Q  325 tcgagtcatacttgaatatgtgaatcggtgtatatgtgcattggtgaa 372  Q
    ||||||||||||||| ||||||||| |||||||| |||| ||||||||    
T  19266867 tcgagtcatacttgattatgtgaattggtgtatacgtgctttggtgaa 19266820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 306
Target Start/End: Original strand, 33627894 - 33627929
Alignment:
Q  271 accacatgcatctagatgagtctagaacattgcata 306  Q
    |||||||||||||| |||||||||||||||||||||    
T  33627894 accacatgcatctacatgagtctagaacattgcata 33627929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 310
Target Start/End: Original strand, 18532420 - 18532458
Alignment:
Q  272 ccacatgcatctagatgagtctagaacattgcatacatt 310  Q
    ||||||||||||||| |||||||||||||||||| ||||    
T  18532420 ccacatgcatctagaggagtctagaacattgcatgcatt 18532458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 310
Target Start/End: Original strand, 22055384 - 22055422
Alignment:
Q  272 ccacatgcatctagatgagtctagaacattgcatacatt 310  Q
    ||||||||||||||| |||||||||||||||||| ||||    
T  22055384 ccacatgcatctagaggagtctagaacattgcatgcatt 22055422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 14343509 - 14343549
Alignment:
Q  271 accacatgcatctagatgagtctagaacattgcatacattt 311  Q
    |||||||||||||||| |||||| ||||||||||| |||||    
T  14343509 accacatgcatctagaagagtctggaacattgcatgcattt 14343549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 311
Target Start/End: Original strand, 16837014 - 16837050
Alignment:
Q  275 catgcatctagatgagtctagaacattgcatacattt 311  Q
    |||||||||||| |||||||||||||||||| |||||    
T  16837014 catgcatctagaagagtctagaacattgcatgcattt 16837050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 311
Target Start/End: Complemental strand, 34937987 - 34937951
Alignment:
Q  275 catgcatctagatgagtctagaacattgcatacattt 311  Q
    |||||||||||| |||||||||||||||||| |||||    
T  34937987 catgcatctagaagagtctagaacattgcatgcattt 34937951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 33396028 - 33395960
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaa 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  33396028 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggaggtgtacttttacatagttgaa 33395960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 129 - 191
Target Start/End: Original strand, 49998806 - 49998868
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacata 191  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||| || |||||||||||    
T  49998806 gtccatgcatcattgtcatatcgagtcatatgagaaatgtaaaaggaggtgcacttttacata 49998868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 133 - 192
Target Start/End: Original strand, 40437764 - 40437823
Alignment:
Q  133 atgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    ||||||||||||||||| |||| ||||||||||||||||||||  |||||||||||||||    
T  40437764 atgcatcatagtcatatcgagtaatatgagaaatgtaaaaggatgtgtacttttacatag 40437823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 46144478 - 46144415
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    |||||||||| || |||||||  | ||||||||||||||||||||||| |||||||||||||||    
T  46144478 gtccatgcattatcgtcatatcaaatcatatgagaaatgtaaaaggaggtgtacttttacatag 46144415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 153 - 192
Target Start/End: Complemental strand, 17022252 - 17022213
Alignment:
Q  153 gtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  17022252 gtcatatgagaaatgtaaaaggaggtgtacttttacatag 17022213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 132 - 183
Target Start/End: Complemental strand, 52399326 - 52399275
Alignment:
Q  132 catgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtact 183  Q
    |||||||||| ||||||| ||||| |||||||||||||||||||| ||||||    
T  52399326 catgcatcatcgtcatatcgagtcgtatgagaaatgtaaaaggaggtgtact 52399275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 271 - 312
Target Start/End: Original strand, 21199241 - 21199282
Alignment:
Q  271 accacatgcatctagatgagtctagaacattgcatacattta 312  Q
    |||||||||||||||| |||||||||||||||||| ||||||    
T  21199241 accacatgcatctagacgagtctagaacattgcatgcattta 21199282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 311
Target Start/End: Complemental strand, 20252734 - 20252698
Alignment:
Q  275 catgcatctagatgagtctagaacattgcatacattt 311  Q
    |||||||||||| |||||||||||||||||| |||||    
T  20252734 catgcatctagaagagtctagaacattgcatgcattt 20252698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 311
Target Start/End: Complemental strand, 33395876 - 33395840
Alignment:
Q  275 catgcatctagatgagtctagaacattgcatacattt 311  Q
    |||||||||||| |||||||||||||||||| |||||    
T  33395876 catgcatctagaagagtctagaacattgcatgcattt 33395840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 25132890 - 25132827
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  25132890 gtccatgcatcatagtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 25132827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 152 - 239
Target Start/End: Original strand, 34135778 - 34135865
Alignment:
Q  152 agtcatatgagaaatgtaaaaggagatgtacttttacataggtgaaatacatgggaggaggtgtactcttacgtgagtgtgtattcaa 239  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||| |  |||||||||||||||||| || ||||| ||||||    
T  34135778 agtcatatgaggaatgtaaaaggaggtgtacttttacataggtgaaatacgtaagaggaggtgtactcttacttgggtgtggattcaa 34135865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 135 - 196
Target Start/End: Complemental strand, 20272069 - 20272008
Alignment:
Q  135 gcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtga 196  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  20272069 gcatcacagtcatattgagtcatatgagaaatgtaaaaggaggtgtacttttacataggtga 20272008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 129 - 189
Target Start/End: Complemental strand, 6093534 - 6093474
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttaca 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  6093534 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaagggtttgtacttttaca 6093474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 19661041 - 19660978
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    ||||||||||||| ||||||| |||||||||| ||||||||||||||| |||||||||||||||    
T  19661041 gtccatgcatcatcgtcatatcgagtcatatgtgaaatgtaaaaggaggtgtacttttacatag 19660978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 24881310 - 24881247
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    ||||||||||||| ||||||| | ||||| |||||||||||||||||| |||||||||||||||    
T  24881310 gtccatgcatcatcgtcatatcgggtcatttgagaaatgtaaaaggaggtgtacttttacatag 24881247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 264 - 372
Target Start/End: Complemental strand, 18994810 - 18994703
Alignment:
Q  264 atatggcaccacatgcatctagatgagtctagaacattgcatacatttattgattaact-aatcgagtcatacttgaatatgtgaatcggtgtatatgtg 362  Q
    |||||| |||||||||||||||| ||||||||| |||||||||||||   |||||   | | || |||||||||||| ||| ||||| |||||||| |||    
T  18994810 atatggtaccacatgcatctagaagagtctagagcattgcatacatt--gtgatttggtgagtcaagtcatacttgattatatgaattggtgtatacgtg 18994713  T
Q  363 cattggtgaa 372  Q
    ||||||||||    
T  18994712 cattggtgaa 18994703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 271 - 312
Target Start/End: Original strand, 24533278 - 24533319
Alignment:
Q  271 accacatgcatctagatgagtctagaacattgcatacattta 312  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  24533278 accacatgcatctagatgagtctagaacattgcatccattta 24533319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 134
Target Start/End: Original strand, 34135698 - 34135777
Alignment:
Q  57 attggaggtgtacttttacattgttt--gtgattatatagttggtgttagacggattgtcgagtcttacttgaagtccat 134  Q
    |||||||||||| ||||| |||| ||  ||| ||||||||||||||||||  | ||||| |||||||| |||||||||||    
T  34135698 attggaggtgtagttttatattgctttggtggttatatagttggtgttaggtgcattgttgagtcttatttgaagtccat 34135777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 192
Target Start/End: Original strand, 9782416 - 9782455
Alignment:
Q  153 gtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    |||||||| ||||||||||||||| |||||||||||||||    
T  9782416 gtcatatgtgaaatgtaaaaggaggtgtacttttacatag 9782455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 192
Target Start/End: Original strand, 40641786 - 40641825
Alignment:
Q  153 gtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    |||||||| ||||||||||||||| |||||||||||||||    
T  40641786 gtcatatgtgaaatgtaaaaggaggtgtacttttacatag 40641825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 310
Target Start/End: Original strand, 24342999 - 24343037
Alignment:
Q  272 ccacatgcatctagatgagtctagaacattgcatacatt 310  Q
    ||||||||||||||| |||||||||||||||||| ||||    
T  24342999 ccacatgcatctagaggagtctagaacattgcatgcatt 24343037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 372
Target Start/End: Original strand, 45619705 - 45619803
Alignment:
Q  275 catgcatctagatgagtctagaacattgcatacattt-attgattaactaatcgagtcatacttgaatatgtgaatcggtgtatatgtgcattggtgaa 372  Q
    |||||||||||| |||||||||||||||||| ||||| | || || |  ||| | |||||| ||||||| |||| | |||| || ||||||||||||||    
T  45619705 catgcatctagaagagtctagaacattgcatgcatttgaatggttgatgaattgtgtcataattgaatacgtgacttggtgaatttgtgcattggtgaa 45619803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 311
Target Start/End: Original strand, 7513687 - 7513723
Alignment:
Q  275 catgcatctagatgagtctagaacattgcatacattt 311  Q
    |||||||||||| |||||||||||||||||| |||||    
T  7513687 catgcatctagaagagtctagaacattgcatgcattt 7513723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 311
Target Start/End: Complemental strand, 22331202 - 22331166
Alignment:
Q  275 catgcatctagatgagtctagaacattgcatacattt 311  Q
    |||||||||||| |||||||||||||||||| |||||    
T  22331202 catgcatctagaagagtctagaacattgcatgcattt 22331166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 311
Target Start/End: Original strand, 42180034 - 42180070
Alignment:
Q  275 catgcatctagatgagtctagaacattgcatacattt 311  Q
    |||||||||||| |||||||||||||||||| |||||    
T  42180034 catgcatctagaagagtctagaacattgcatgcattt 42180070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1204 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold1204
Description:

Target: scaffold1204; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 129 - 191
Target Start/End: Original strand, 1697 - 1759
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacata 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  1697 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggaggtgtactcttacata 1759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 129 - 197
Target Start/End: Original strand, 15380 - 15448
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaa 197  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||    
T  15380 gtccatgcaacatagtcatattgagccatatgagaaatgtaaaagggggtgtacttttacataggtgaa 15448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 15512 - 15552
Alignment:
Q  271 accacatgcatctagatgagtctagaacattgcatacattt 311  Q
    |||||||||||||||| |||||||||||||||||| |||||    
T  15512 accacatgcatctagaagagtctagaacattgcatgcattt 15552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 271 - 371
Target Start/End: Original strand, 26038 - 26138
Alignment:
Q  271 accacatgcatctagatgagtctagaacattgcatacatttattgattaactaatcgagtcatacttgaatatgtgaatcggtgtatatgtgcattggtg 370  Q
    |||||||||||||||| ||||||||||||| |||| |||||||  |||    | ||||||| ||||||| ||||||||||||||||||||||||||||||    
T  26038 accacatgcatctagaagagtctagaacatagcatgcatttatctattggtgagtcgagtcttacttgattatgtgaatcggtgtatatgtgcattggtg 26137  T
Q  371 a 371  Q
    |    
T  26138 a 26138  T

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Target: scaffold0357 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0357
Description:

Target: scaffold0357; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 6442 - 6379
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  6442 gtccatgcatcatcgtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 6379  T

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Target: scaffold0253 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0253
Description:

Target: scaffold0253; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 10059 - 9996
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  10059 gtccatgcatcatcgtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 9996  T

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Target: scaffold0253; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 19484 - 19421
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  19484 gtccatgcatcatcgtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 19421  T

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Target: scaffold0174 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 129 - 196
Target Start/End: Original strand, 21571 - 21638
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtga 196  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||    
T  21571 gtccatgcattatagtcatattgagtcatatgagaaatctaaaaggaggtgtaattttacataggtga 21638  T

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Target: scaffold0174; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 1289 - 1226
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    ||||||||||||| |||||||  ||||||||||||||||||||||||| | |||||||||||||    
T  1289 gtccatgcatcatcgtcatatctagtcatatgagaaatgtaaaaggaggtttacttttacatag 1226  T

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Target: scaffold0107 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 12147 - 12084
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  12147 gtccatgcatcattgtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 12084  T

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Target: scaffold0006 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 129 - 192
Target Start/End: Original strand, 198841 - 198904
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    ||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  198841 gtccatgcatcattgtcatatcgagtcatatgagaaatataaaaggagatgtacttttacatag 198904  T

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Target: scaffold0031 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 129 - 191
Target Start/End: Original strand, 98643 - 98705
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacata 191  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  98643 gtccatgcatcatcgtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacata 98705  T

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Target: scaffold0013 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 129 - 197
Target Start/End: Original strand, 10846 - 10913
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaa 197  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||| ||||    
T  10846 gtccatgcatcatagtcatattgagtcatatgag-aatgtaaaaggaggtgtactttaacatagttgaa 10913  T

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Target: scaffold0387 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0387
Description:

Target: scaffold0387; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 129 - 192
Target Start/End: Original strand, 2427 - 2490
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    ||||||||||||  ||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  2427 gtccatgcatcaccgtcatatcgagtcatatgagaaatttaaaaggagatgtacttttacatag 2490  T

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Target: scaffold0047 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 129 - 192
Target Start/End: Original strand, 1558 - 1621
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||| || |||||||||||||||    
T  1558 gtccatgcatcattgtcatatcgagtcatatgagaaatgtaaaagcaggtgtacttttacatag 1621  T

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Target: scaffold0024 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 245 - 372
Target Start/End: Original strand, 101086 - 101215
Alignment:
Q  245 aaattatcttcggactcctatatggcaccacatgcatctagatgagtctagaacattgcatacatttattgattaactaatcgagtcatac--ttgaata 342  Q
    ||||||||| | || ||||| |||| ||||||||||||||||||||||||||||||||||| |||||||| |||    | |||||||||||  ||| |||    
T  101086 aaattatctcctgaatccta-atggtaccacatgcatctagatgagtctagaacattgcatgcatttattaattggtaagtcgagtcatacttttggata 101184  T
Q  343 tgtgaa-tcggtgtatatgtgcattggtgaa 372  Q
    |||||| | ||||| ||||||||||||||||    
T  101185 tgtgaatttggtgtgtatgtgcattggtgaa 101215  T

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Target: scaffold0017 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 130 - 197
Target Start/End: Complemental strand, 11293 - 11226
Alignment:
Q  130 tccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaa 197  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||| ||||    
T  11293 tccaagcatcatagtcatatcgagtcatatgagaaatgtaaaaggatgtgtacttttacatagttgaa 11226  T

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Target: scaffold0111 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 58 - 159
Target Start/End: Complemental strand, 23133 - 23029
Alignment:
Q  58 ttggaggtgtacttttacattgttt--gtgattatatagttggtgttagacggattgtcgagtcttacttgaa-gtccatgcatcatagtcatattgagt 154  Q
    |||||||||||||||||||||  ||  ||| |||| | ||||||||||| || |||||||||||| ||||| | || |||||||||||||||||||||||    
T  23133 ttggaggtgtacttttacatttatttggtggttatgttgttggtgttaggcgcattgtcgagtctcacttgtatgttcatgcatcatagtcatattgagt 23034  T
Q  155 catat 159  Q
    |||||    
T  23033 catat 23029  T

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Target: scaffold0021 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 129 - 190
Target Start/End: Original strand, 19259 - 19320
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacat 190  Q
    ||||||||||||| |||| || |||||||||||||||||||||||||| |||||||||||||    
T  19259 gtccatgcatcatcgtcacatcgagtcatatgagaaatgtaaaaggaggtgtacttttacat 19320  T

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Target: scaffold0021; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 129 - 190
Target Start/End: Original strand, 23524 - 23585
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacat 190  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||| |||| ||||||||    
T  23524 gtccatgcatcatcgtcatatcgagtcatatgagaaatgtaaaaggaggtgtaattttacat 23585  T

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Target: scaffold0021; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 129 - 190
Target Start/End: Original strand, 28835 - 28896
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacat 190  Q
    ||||||||||||| |||| || |||||||||||||||||||||||||| |||||||||||||    
T  28835 gtccatgcatcatcgtcacatcgagtcatatgagaaatgtaaaaggaggtgtacttttacat 28896  T

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Target: scaffold0175 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 129 - 192
Target Start/End: Original strand, 6643 - 6706
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    ||||||||||||| ||||||| |||||||||| ||||||||||||||| |||| ||||||||||    
T  6643 gtccatgcatcattgtcatatcgagtcatatgtgaaatgtaaaaggaggtgtatttttacatag 6706  T

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Target: scaffold0032 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 129 - 192
Target Start/End: Original strand, 106095 - 106158
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    ||||||||||||| ||||||| |||||||||| ||||||||||||||| |||||||| ||||||    
T  106095 gtccatgcatcatcgtcatatcgagtcatatgtgaaatgtaaaaggaggtgtactttaacatag 106158  T

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Target: scaffold0028 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 129 - 192
Target Start/End: Original strand, 63949 - 64012
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    ||||||||||||| |||||||  ||||||||| ||||||||||||||| |||||||||||||||    
T  63949 gtccatgcatcatcgtcatatcaagtcatatgtgaaatgtaaaaggaggtgtacttttacatag 64012  T

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Target: scaffold0412 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0412
Description:

Target: scaffold0412; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 265 - 372
Target Start/End: Complemental strand, 1730 - 1624
Alignment:
Q  265 tatggcaccacatgcatctagatgagtctagaacattgcatacatttattgattaactaa-tcgagtcatacttgaatatgtgaatcggtgtatatgtgc 363  Q
    ||||| |||||||||||||||| |||||| ||||||| ||||||||   ||||| | | | | ||||||||| ||| ||||||||| |||||||||||||    
T  1730 tatggtaccacatgcatctagaagagtcttgaacatttcatacattg--tgattcagtgagttgagtcatacatgactatgtgaattggtgtatatgtgc 1633  T
Q  364 attggtgaa 372  Q
    |||||||||    
T  1632 attggtgaa 1624  T

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Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 153 - 192
Target Start/End: Complemental strand, 68187 - 68148
Alignment:
Q  153 gtcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  68187 gtcatatgagaaatgtaaaaggaggtgtacttttacatag 68148  T

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Target: scaffold0009; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 311
Target Start/End: Original strand, 256037 - 256082
Alignment:
Q  266 atggcaccacatgcatctagatgagtctagaacattgcatacattt 311  Q
    |||| ||| |||||||||||| |||||||||||||||||| |||||    
T  256037 atggtaccgcatgcatctagaagagtctagaacattgcatgcattt 256082  T

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Target: scaffold0508 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 265 - 314
Target Start/End: Complemental strand, 5896 - 5847
Alignment:
Q  265 tatggcaccacatgcatctagatgagtctagaacattgcatacatttatt 314  Q
    ||||| |||||||||||||||| | |||||||||||||||| ||||||||    
T  5896 tatggtaccacatgcatctagaagggtctagaacattgcatgcatttatt 5847  T

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Target: scaffold0112 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 160
Target Start/End: Complemental strand, 12397 - 12366
Alignment:
Q  129 gtccatgcatcatagtcatattgagtcatatg 160  Q
    ||||||||||||||||||||||||||||||||    
T  12397 gtccatgcatcatagtcatattgagtcatatg 12366  T

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Target: scaffold0186 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 372
Target Start/End: Complemental strand, 11573 - 11471
Alignment:
Q  271 accacatgcatctagatgagtctagaacattgcatacatttattgatt-aactaatcgagtcatacttgaatatgtgaatcggtgtatatgtgcattggt 369  Q
    |||||||||||||||| |||||||||| ||||||| |||||  | |||     || || ||||||||||| ||||||| | |||| ||||||||||||||    
T  11573 accacatgcatctagaagagtctagaatattgcatgcatttgataattggtgaaaacgtgtcatacttgactatgtgacttggtgaatatgtgcattggt 11474  T
Q  370 gaa 372  Q
    |||    
T  11473 gaa 11471  T

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Target: scaffold0010 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 192
Target Start/End: Complemental strand, 29790 - 29752
Alignment:
Q  154 tcatatgagaaatgtaaaaggagatgtacttttacatag 192  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  29790 tcatatgagaaatgtaaaatgaggtgtacttttacatag 29752  T

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Target: scaffold0123 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 311
Target Start/End: Complemental strand, 33897 - 33830
Alignment:
Q  245 aaattatcttcggactcctatatggcaccacatgcatctagat--gagtctagaacattgcatacattt 311  Q
    ||||||||| |||| ||||| |||| ||||||||||||||||   |||||||||||||||||| |||||    
T  33897 aaattatctccggaatccta-atggtaccacatgcatctagagaagagtctagaacattgcatgcattt 33830  T

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Target: scaffold1869 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1869
Description:

Target: scaffold1869; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 305
Target Start/End: Complemental strand, 860 - 801
Alignment:
Q  245 aaattatcttcggactcctatatggcaccacatgcatctagatgagtctagaacattgcat 305  Q
    |||||||||||||| |||||| ||  |||| ||||||||||| |||| |||||||||||||    
T  860 aaattatcttcggaatcctat-tgctaccatatgcatctagaagagtttagaacattgcat 801  T

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Target: scaffold0396 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0396
Description:

Target: scaffold0396; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 311
Target Start/End: Original strand, 171 - 207
Alignment:
Q  275 catgcatctagatgagtctagaacattgcatacattt 311  Q
    |||||||||||| |||||||||||||||||| |||||    
T  171 catgcatctagaagagtctagaacattgcatgcattt 207  T

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Target: scaffold0138 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 311
Target Start/End: Complemental strand, 26842 - 26806
Alignment:
Q  275 catgcatctagatgagtctagaacattgcatacattt 311  Q
    |||||||||||| |||||||||||||||||| |||||    
T  26842 catgcatctagaagagtctagaacattgcatgcattt 26806  T

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Target: scaffold0138; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 311
Target Start/End: Complemental strand, 27857 - 27821
Alignment:
Q  275 catgcatctagatgagtctagaacattgcatacattt 311  Q
    |||||||||||| |||||||||||||||||| |||||    
T  27857 catgcatctagaagagtctagaacattgcatgcattt 27821  T

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Target: scaffold0138; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 311
Target Start/End: Complemental strand, 39853 - 39817
Alignment:
Q  275 catgcatctagatgagtctagaacattgcatacattt 311  Q
    |||||||||||| |||||||||||||||||| |||||    
T  39853 catgcatctagaagagtctagaacattgcatgcattt 39817  T

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Target: scaffold0115 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 311
Target Start/End: Complemental strand, 20255 - 20219
Alignment:
Q  275 catgcatctagatgagtctagaacattgcatacattt 311  Q
    |||||||||||| |||||||||||||||||| |||||    
T  20255 catgcatctagaagagtctagaacattgcatgcattt 20219  T

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