View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6854_high_2 (Length: 1026)

Name: NF6854_high_2
Description: NF6854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6854_high_2
NF6854_high_2
[»] chr1 (1 HSPs)
chr1 (19-966)||(33446417-33447351)
[»] chr5 (1 HSPs)
chr5 (705-775)||(9097684-9097754)
[»] chr2 (2 HSPs)
chr2 (67-128)||(28306150-28306211)
chr2 (67-128)||(37235900-37235961)


Alignment Details
Target: chr1 (Bit Score: 743; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 743; E-Value: 0
Query Start/End: Original strand, 19 - 966
Target Start/End: Original strand, 33446417 - 33447351
Alignment:
Q  19 ggacatcatgctaaccttaagcatggaagtattgtcatcgcagccattacaagttgtactaatacatcaaaccctagtgcaatgcttagtgctggtcttg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33446417 ggacatcatgctaaccttaagcatggaagtattgtcatcgcagccattacaagttgtactaatacatcaaaccctagtgcaatgcttagtgctggtcttg 33446516  T
Q  119 tcgcaaagaaagcctgtgaactagatttggaggttagtctcaactctcaacacatacatgtaaaatcaaaatgaaaattgga--caaaccttcgattccg 216  Q
    |||||||||||||||||||||||| ||||||||||||||| || ||||||                   ||||||| |||||  ||||||||||||||||    
T  33446517 tcgcaaagaaagcctgtgaactaggtttggaggttagtctgaaatctcaa-------------------aatgaaatttggatgcaaaccttcgattccg 33446597  T
Q  217 attggctagatagtctaactataacatcaatcattttgatatgttgtttccatgtgattttatatcaggtcaagccatggattaaaacaagtcttgctcc 316  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  33446598 attggctagatagtctaactataatatcaatcattttgatatgttgtttccatgtgattttatatcaggtcaagcgatggattaaaacaagtcttgctcc 33446697  T
Q  317 tggctcgagggtagttaccgaatatttaatccagaggttttcgatat--acctactcatttgtcttttcatttcaggtgtttcacgtatatttatttttt 414  Q
    |||||| || |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33446698 tggctcaagagtagttaccgaatatttaatccagaggttttcgatatatacctactcatttgtcttttcatttcaggtgtttcacgtatatttatttttt 33446797  T
Q  415 aagaacataccttgcttatattttatgtagtggcctacaaaaatatctaaatcagctgggctttcacattgttggctatggttgcacaacttgtatcggg 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||| ||     
T  33446798 aagaacataccttgcttatattttatgtagtggcctacaaaaatatctaaatcagttgggctttcacactgttggctatggttgcacaacctgtattgga 33446897  T
Q  515 aattctggagaacttgataactcggtggcatctgcaatttcagaaaatggtatacattaagataatgcagatatttcattttcattttataacttaataa 614  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||| ||||||||    
T  33446898 aattccggagaactcgataactcggtggcatctgcaatttcagaaaatggtacacattaagataatacagatatttctttttcattttatatcttaataa 33446997  T
Q  615 ccacgaccctgctttaatcttcttgttccaacctttgcagacattattgctgcttctgttctttctggaaaccgaaattttgaaggtcgtgttcatccgt 714  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33446998 ccacgaccctgctttaaacttcttgttccaacctttgcagacattattgctgcttctgttctttctggaaaccgaaattttgaaggtcgtgttcatccgt 33447097  T
Q  715 taacaagagcaaactaccttgcttctcctccattagttgttgcctatgccctttccggcacggtttgtctatgttcttatgctttcatgatgtaacagtt 814  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  33447098 taacaagagcaaactaccttgcttctcctccattagttgttgcctatgccctttccggcacggtttgtctatgttcttatgctttcatgatataacagtt 33447197  T
Q  815 agcttttgaatgtaatttaaaaacatcttgaatgagtaagacttttttctctcttgtaagatagac--nnnnnnnngtacaataagtagcagttggattt 912  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||| ||||||||    
T  33447198 aacttttgaatgtaatttaaaaacatcttgaatgagtaagacttttttctctcttgtaagatagacaaaaaaaaaagtacaataagtagcaattggattt 33447297  T
Q  913 cgtcttgaagcagtcatgaattttctcaaaggagtttgagaataaggtccagag 966  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33447298 cgtcttgaagcagtcatgaattttctcaaaggagtttgagaataaggtccagag 33447351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 705 - 775
Target Start/End: Original strand, 9097684 - 9097754
Alignment:
Q  705 gttcatccgttaacaagagcaaactaccttgcttctcctccattagttgttgcctatgccctttccggcac 775  Q
    |||||||| ||||| || || |||||||| |||||||||||  | |||||||||||||||||| |||||||    
T  9097684 gttcatccattaacgagggctaactacctagcttctcctcctctcgttgttgcctatgcccttgccggcac 9097754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 128
Target Start/End: Complemental strand, 28306211 - 28306150
Alignment:
Q  67 acaagttgtactaatacatcaaaccctagtgcaatgcttagtgctggtcttgtcgcaaagaa 128  Q
    ||||||||||| |||||||||||||| ||||  |||||| | ||||||||||| ||||||||    
T  28306211 acaagttgtacaaatacatcaaacccaagtgttatgcttggagctggtcttgttgcaaagaa 28306150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 128
Target Start/End: Original strand, 37235900 - 37235961
Alignment:
Q  67 acaagttgtactaatacatcaaaccctagtgcaatgcttagtgctggtcttgtcgcaaagaa 128  Q
    ||||||||||| |||||||||||||| ||||  |||||| | ||||||||||| ||||||||    
T  37235900 acaagttgtacaaatacatcaaacccaagtgttatgcttggagctggtcttgttgcaaagaa 37235961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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