View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6854_high_23 (Length: 404)
Name: NF6854_high_23
Description: NF6854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6854_high_23 |
 | |
|
| [»] scaffold0108 (1 HSPs) |
| | |
|
| [»] scaffold0064 (1 HSPs) |
| | |
|
| [»] scaffold0051 (1 HSPs) |
| | |
|
| [»] scaffold0897 (1 HSPs) |
| | |
|
| [»] scaffold0304 (2 HSPs) |
| | |
|
| [»] scaffold0319 (2 HSPs) |
| | |
|
| [»] scaffold0040 (1 HSPs) |
| | |
|
| [»] scaffold0022 (1 HSPs) |
| | |
|
| [»] scaffold0107 (1 HSPs) |
| | |
|
| [»] scaffold0001 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 10787030 - 10787425
Alignment:
| Q |
1 |
gctcgtcctcagcagggtgatagcctcgatagttacgtctcaatccatccccgtaacagttatgccagttgttgcagaatcgacggcgaaccagtcgagg |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||| || || |||||||||||||||| |||| |
|
|
| T |
10787030 |
gctcgtcctcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgagg |
10787129 |
T |
|
| Q |
101 |
gggcagtaatctcttgtaccagcctgaaacaaagcggaaacgggtgtccccgcctgttatctctctgcgataacgcgcaacgtttattgtctccaaaaga |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
10787130 |
aggcagtaatcttttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaaga |
10787229 |
T |
|
| Q |
201 |
gaccagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatcca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
10787230 |
gaccagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccagcgtcca |
10787329 |
T |
|
| Q |
301 |
tagcattctgcaacaagccttggatggtaggaatgcagggctcagggtccagcatgaactgggtacaccttaaaatgcagaatatgtgatgtccat |
396 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| | ||||||||| ||||||||||||| |
|
|
| T |
10787330 |
tagcattctgcaacaagccttggacggtaggaatgcagggctcagggtctagcatgaactgggtacacctcagaatgcagaacatgtgatgtccat |
10787425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 14688763 - 14688368
Alignment:
| Q |
1 |
gctcgtcctcagcagggtgatagcctcgatagttacgtctcaatccatccccgtaacagttatgccagttgttgcagaatcgacggcgaaccagtcgagg |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||| || |||| ||||| |
|
|
| T |
14688763 |
gctcatcctcagcagggtgatagcctcgatagttgcgtctcaatccatccccgcgccagttgtgccagttgttgcagaatcgacgacggaccaaccgagg |
14688664 |
T |
|
| Q |
101 |
gggcagtaatctcttgtaccagcctgaaacaaagcggaaacgggtgtccccgcctgttatctctctgcgataacgcgcaacgtttattgtctccaaaaga |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||| ||||| |||||| |||||||||||||| |
|
|
| T |
14688663 |
aggcagtaatcttttgtaccagcctgaaacgaagcggaaacgggtgtccccgcccgttatatctctgcgatagcgcgcgacgtttcttgtctccaaaaga |
14688564 |
T |
|
| Q |
201 |
gaccagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatcca |
300 |
Q |
| |
|
||||| ||||||||||||||| |||||| |||| || ||| ||||| ||||||||||||||| || ||||| |||||||||||||||||||| ||||||| |
|
|
| T |
14688563 |
gaccaaaaatcatgaaaaagtgtagcggtatcaggtgtgataccgtcaagcgccctcagcagcacgtcgaaatacagggcggtcacagagccagcatcca |
14688464 |
T |
|
| Q |
301 |
tagcattctgcaacaagccttggatggtaggaatgcagggctcagggtccagcatgaactgggtacaccttaaaatgcagaatatgtgatgtccat |
396 |
Q |
| |
|
| ||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||| |
|
|
| T |
14688463 |
tggcattcttcaacaaaccttggatggtagggatgcagggctcagggtccagcatgaactgggtgcacctcaaaatgcagaacatgtgatgtccat |
14688368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 7360765 - 7360370
Alignment:
| Q |
1 |
gctcgtcctcagcagggtgatagcctcgatagttacgtctcaatccatccccgtaacagttatgccagttgttgcagaatcgacggcgaaccagtcgagg |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||| || | || ||||| |
|
|
| T |
7360765 |
gctcatcctcagcagggtgatagcctcgatagttacgtctcaatacatccccgcgacagttgtgccagttgttgcagaatcgacgacggatcaaccgagg |
7360666 |
T |
|
| Q |
101 |
gggcagtaatctcttgtaccagcctgaaacaaagcggaaacgggtgtccccgcctgttatctctctgcgataacgcgcaacgtttattgtctccaaaaga |
200 |
Q |
| |
|
||||||||||| || |||||||||||||| || |||||| ||||||| |||||||||| ||||| ||||| ||||| |||||| ||||||||||||| |
|
|
| T |
7360665 |
aggcagtaatcttttataccagcctgaaacgaaacggaaagaggtgtccacgcctgttatgtctctacgatagcgcgcgacgtttcgtgtctccaaaaga |
7360566 |
T |
|
| Q |
201 |
gaccagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatcca |
300 |
Q |
| |
|
||| ||||||||||||||||| ||||| |||| || ||||||||| |||||||||||||||||| ||||||||||| |||||||||||||| ||||||| |
|
|
| T |
7360565 |
gacaagaaatcatgaaaaagtgcagcggcatcaggtgtgacaccgtcaagcgccctcagcagtacgtcgaagtacagagcggtcacagagccagcatcca |
7360466 |
T |
|
| Q |
301 |
tagcattctgcaacaagccttggatggtaggaatgcagggctcagggtccagcatgaactgggtacaccttaaaatgcagaatatgtgatgtccat |
396 |
Q |
| |
|
| ||||||| ||| || |||||||||||||| | |||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| ||||||| |
|
|
| T |
7360465 |
tggcattcttcaagaaaccttggatggtagggacgcagggctcaggatccagcatgaactgggtacacctcaaaatgcagaacatgtggtgtccat |
7360370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 99 - 309
Target Start/End: Original strand, 10157909 - 10158119
Alignment:
| Q |
99 |
gggggcagtaatctcttgtaccagcctgaaacaaagcggaaacgggtgtccccgcctgttatctctctgcgataacgcgcaacgtttattgtctccaaaa |
198 |
Q |
| |
|
|||||||| || || ||||||||||||||||| ||||| || ||| |||||| || |||||||| ||||||||||||||||| || | |||||||||| |
|
|
| T |
10157909 |
gggggcagcaaccttttgtaccagcctgaaacgaagcgaaagtgggagtcccctcccgttatctccctgcgataacgcgcaacattcttcgtctccaaaa |
10158008 |
T |
|
| Q |
199 |
gagaccagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatc |
298 |
Q |
| |
|
||||||| || |||| |||||| || |||| | || ||||| ||||||||||| || |||||| ||||| || ||| |||| ||||| |||| |
|
|
| T |
10158009 |
gagaccaaaagtcattgaaaagttcagttatatcaggagagataccgtcaagcgccctcaacattacatcaaagtaaagcgcgctcacggagccatcatc |
10158108 |
T |
|
| Q |
299 |
catagcattct |
309 |
Q |
| |
|
||||||||||| |
|
|
| T |
10158109 |
catagcattct |
10158119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 1729848 - 1730243
Alignment:
| Q |
1 |
gctcgtcctcagcagggtgatagcctcgatagttacgtctcaatccatccccgtaacagttatgccagttgttgcagaatcgacggcgaaccagtcgagg |
100 |
Q |
| |
|
|||||||||||||| || |||| ||||||||||| ||||||||||||||||||| |||||| |||||||| ||||| ||||||||||| |||| |||| |
|
|
| T |
1729848 |
gctcgtcctcagcaaggcgataacctcgatagttgcgtctcaatccatccccgtgacagttgtgccagttattgcaaaatcgacggcggaccaactgagg |
1729947 |
T |
|
| Q |
101 |
gggcagtaatctcttgtaccagcctgaaacaaagcggaaacgggtgtccccgcctgttatctctctgcgataacgcgcaacgtttattgtctccaaaaga |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||| |
|
|
| T |
1729948 |
aggcagtaatctcttataccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcgacgtttcttgtctccaaaaga |
1730047 |
T |
|
| Q |
201 |
gaccagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatcca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
1730048 |
gaccagaaatcatgaaaaagtctagcggaatcaagtctgacatcgttaagcaccctcagcagtacatcgaagtacagggcggtcacagagccagcgtcca |
1730147 |
T |
|
| Q |
301 |
tagcattctgcaacaagccttggatggtaggaatgcagggctcagggtccagcatgaactgggtacaccttaaaatgcagaatatgtgatgtccat |
396 |
Q |
| |
|
||||||||| || ||| ||||||| ||||||||| ||||||||||||| |||||||||||| |||||||| ||||||||||| || |||||||||| |
|
|
| T |
1730148 |
tagcattcttcagcaaaccttggacggtaggaatacagggctcagggtacagcatgaactgagtacacctcaaaatgcagaacatatgatgtccat |
1730243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 308
Target Start/End: Complemental strand, 22338640 - 22338584
Alignment:
| Q |
252 |
gccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcattc |
308 |
Q |
| |
|
|||||||||| ||||| ||||| || ||| |||||||||| ||||||||||||||| |
|
|
| T |
22338640 |
gccctcagcatgacatcaaagtagagcgcgctcacagagccagcatccatagcattc |
22338584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 14329294 - 14328899
Alignment:
| Q |
1 |
gctcgtcctcagcagggtgatagcctcgatagttacgtctcaatccatccccgtaacagttatgccagttgttgcagaatcgacggcgaaccagtcgagg |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||| | || || ||||| |
|
|
| T |
14329294 |
gctcatcctcagcagggtgatagcctcgatagttgcgtctcaatccatccccgcgacagttgtgccagttgttgcagaatcgacgacaaatcaaccgagg |
14329195 |
T |
|
| Q |
101 |
gggcagtaatctcttgtaccagcctgaaacaaagcggaaacgggtgtccccgcctgttatctctctgcgataacgcgcaacgtttattgtctccaaaaga |
200 |
Q |
| |
|
||||||||||| || |||||||||||||| |||||||||||||||||| | || ||||| ||||||||||| ||||| |||||| ||||||||||||| |
|
|
| T |
14329194 |
aggcagtaatcttttataccagcctgaaacgaagcggaaacgggtgtccacacccgttatgtctctgcgatagcgcgcgacgtttcgtgtctccaaaaga |
14329095 |
T |
|
| Q |
201 |
gaccagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatcca |
300 |
Q |
| |
|
||||||||||||||||||||| |||||| |||| || ||| ||||| |||||||||||||||||| ||||||||||| |||||||||||||| ||||||| |
|
|
| T |
14329094 |
gaccagaaatcatgaaaaagtgtagcggcatcaggtgtgataccgtcaagcgccctcagcagtacgtcgaagtacagagcggtcacagagccagcatcca |
14328995 |
T |
|
| Q |
301 |
tagcattctgcaacaagccttggatggtaggaatgcagggctcagggtccagcatgaactgggtacaccttaaaatgcagaatatgtgatgtccat |
396 |
Q |
| |
|
| ||||||| || ||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
14328994 |
tggcattcttcagcaaaccttagatggtagggatgcagggctcagggtccagcatgaactgggtacacctcaaaatgcagaacatgtgatgtccat |
14328899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 9 - 304
Target Start/End: Complemental strand, 18166922 - 18166626
Alignment:
| Q |
9 |
tcagcagggtgatagcctcgatagttacgtctcaatccatccccgtaacagttatgccagttgttgcagaatcgacggcgaaccagtcgagggggcagta |
108 |
Q |
| |
|
|||||||| ||| | |||||||||||||| || | |||||| || ||| || ||||||||||||||||||||||| | || | | || ||||| | |
|
|
| T |
18166922 |
tcagcaggatgaaaccctcgatagttacgccttagtccatctccacgacaattgtgccagttgttgcagaatcgacgacaaattaactggggaggcagca |
18166823 |
T |
|
| Q |
109 |
atctcttgtaccagcctgaaacaaagcggaaacgggtgtccccgcctgttatctctctgcgataacgcgcaac-gtttattgtctccaaaagagaccaga |
207 |
Q |
| |
|
| | ||||||||||||||| || ||||||||| ||| |||||| ||||||||||| ||||||||||||||||| ||| ||||||||||||||||||| | |
|
|
| T |
18166822 |
accgcttgtaccagcctgagacgaagcggaaatgggagtcccctcctgttatctccctgcgataacgcgcaacatttttttgtctccaaaagagaccaaa |
18166723 |
T |
|
| Q |
208 |
aatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagc |
304 |
Q |
| |
|
| |||| || ||| ||||| |||| | ||| ||||| |||||| ||||||| |||||| ||||| || ||||||||||| || ||||||||||| |
|
|
| T |
18166722 |
agtcattgaagagttcagcggtatcaggagtgataccgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccatagc |
18166626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 6 - 396
Target Start/End: Original strand, 24954596 - 24954977
Alignment:
| Q |
6 |
tcctcagcagggtgatagcctcgatagttacgtctcaatccatccccgtaacagttatgccagttgttgcagaatcgacggcgaaccagtcgagggggca |
105 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||| || | || |||||| |||| |
|
|
| T |
24954596 |
tcctcagcagggtgatagcctcgatagttgcgtctcaatccatccccgcgacagt---------tgttgcagaatcgacgacggatcaatcgaggaggca |
24954686 |
T |
|
| Q |
106 |
gtaatctcttgtaccagcctgaaacaaagcggaaacgggtgtccccgcctgttatctctctgcgataacgcgcaacgtttattgtctccaaaagagacca |
205 |
Q |
| |
|
||||||| || |||||||||||||| |||||||||| ||||||| |||||||||| |||| ||||| ||||| |||||| |||||||| ||||||||| |
|
|
| T |
24954687 |
gtaatcttttataccagcctgaaacgaagcggaaacaggtgtccacgcctgttatgtctcgacgatatcgcgcgacgtttcgtgtctccagaagagacca |
24954786 |
T |
|
| Q |
206 |
gaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagca |
305 |
Q |
| |
|
|||||||||||||||| |||||| |||| || ||| ||||| |||||||||||||||||| ||||||||||| |||||||||||||| |||||||| ||| |
|
|
| T |
24954787 |
gaaatcatgaaaaagtgtagcggcatcaggtgtgataccgtcaagcgccctcagcagtacgtcgaagtacagagcggtcacagagccagcatccatggca |
24954886 |
T |
|
| Q |
306 |
ttctgcaacaagccttggatggtaggaatgcagggctcagggtccagcatgaactgggtacaccttaaaatgcagaatatgtgatgtccat |
396 |
Q |
| |
|
|||| || |||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||| ||||||||||| ||||| ||||||| |
|
|
| T |
24954887 |
ttcttcagcaagccttggatggtagggatgcaaggctcagggtccaacatgaactgggtacacctcaaaatgcagaacatgtgttgtccat |
24954977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 9 - 308
Target Start/End: Complemental strand, 23621749 - 23621449
Alignment:
| Q |
9 |
tcagcagggtgatagcctcgatagttacgtctcaatccatccccgtaacagttatgccagttgttgcagaatcgacggcgaaccag-tcgagggggcagt |
107 |
Q |
| |
|
|||||||| ||| | ||| ||||||| || || |||||||| || |||||| ||||||||||||||||||||||| |||| | | | |||||||| |
|
|
| T |
23621749 |
tcagcaggatgaaaccctagatagttgcgccttaatccatctccacgacagttgtgccagttgttgcagaatcgacgacgaattaactggggggggcagc |
23621650 |
T |
|
| Q |
108 |
aatctcttgtaccagcctgaaacaaagcggaaacgggtgtccccgcctgttatctctctgcgataacgcgcaacgtttattgtctccaaaagagaccaga |
207 |
Q |
| |
|
|| ||||||||||||| |||||| ||||||||| ||| |||||| ||||||||||| ||||||||||||||||| ||| ||||||||||||||||||| | |
|
|
| T |
23621649 |
aacctcttgtaccagcatgaaacgaagcggaaatgggagtcccctcctgttatctccctgcgataacgcgcaacattttttgtctccaaaagagaccaaa |
23621550 |
T |
|
| Q |
208 |
aatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcatt |
307 |
Q |
| |
|
| ||| || ||| ||||| ||| | ||| ||||| |||||| ||||||| |||||| ||||| || ||||||||||| || |||||||||||||| |
|
|
| T |
23621549 |
agtcaatgaagagttcagcggtgtcaggagtgataccgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccatagcatt |
23621450 |
T |
|
| Q |
308 |
c |
308 |
Q |
| |
|
| |
|
|
| T |
23621449 |
c |
23621449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 9 - 303
Target Start/End: Complemental strand, 23196144 - 23195850
Alignment:
| Q |
9 |
tcagcagggtgatagcctcgatagttacgtctcaatccatccccgtaacagttatgccagttgttgcagaatcgacggcgaaccagtcgagggggcagta |
108 |
Q |
| |
|
|||||||| ||| | ||||||||||| || || | |||||| || |||||| ||||||||||||||||||||||| |||| | | | || |||| | |
|
|
| T |
23196144 |
tcagcaggatgaaaccctcgatagttgcgccttagtccatctccacgacagttgtgccagttgttgcagaatcgacgacgaattaattggggaggcaaca |
23196045 |
T |
|
| Q |
109 |
atctcttgtaccagcctgaaacaaagcggaaacgggtgtccccgcctgttatctctctgcgataacgcgcaacgtttattgtctccaaaagagaccagaa |
208 |
Q |
| |
|
| ||||| |||||||||| |||||||||||| ||| |||||| ||| ||||||| ||||||||||||||||| ||| ||||||||||||||||||| || |
|
|
| T |
23196044 |
acctcttaaaccagcctgagacaaagcggaaatgggagtcccctcctattatctccctgcgataacgcgcaacattttttgtctccaaaagagaccaaaa |
23195945 |
T |
|
| Q |
209 |
atcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatag |
303 |
Q |
| |
|
|||| || ||| ||||| |||| | ||| ||||| |||||| ||||||| |||||| ||||| || ||||||||||| || |||||||||| |
|
|
| T |
23195944 |
gtcattgaagagttcagcggtatcaggagtgataccgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccatag |
23195850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 9 - 301
Target Start/End: Original strand, 22643208 - 22643499
Alignment:
| Q |
9 |
tcagcagggtgatagcctcgatagttacgtctcaatccatccccgtaacagttatgccagttgttgcagaatcgacggcgaaccagtcgagggggcagta |
108 |
Q |
| |
|
|||||||| ||| | ||||||||||| || || | |||||| || |||||| ||| ||||||||||||||||||| |||| | || || || | |
|
|
| T |
22643208 |
tcagcaggatgaaaccctcgatagttgcgccttagtccatctccaagacagttgtgctagttgttgcagaatcgacgacgaattaacttgggaggaagca |
22643307 |
T |
|
| Q |
109 |
atctcttgtaccagcctgaaacaaagcggaaacgggtgtccccgcctgttatctctctgcgataacgcgcaacgtttattgtctccaaaagagaccagaa |
208 |
Q |
| |
|
| ||||||||||||||| | || ||| ||||| ||| ||||| |||||| |||| ||||||||| ||||||| ||| ||||||||||||||||||| || |
|
|
| T |
22643308 |
acctcttgtaccagcctaagacgaagtggaaatgggactcccctcctgttgtctccctgcgataatgcgcaacattttttgtctccaaaagagaccaaaa |
22643407 |
T |
|
| Q |
209 |
atcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccat |
301 |
Q |
| |
|
|||| || ||| ||||| ||||| ||| ||||| |||||| ||||||| |||||| ||||| || ||||||||||| || |||||||| |
|
|
| T |
22643408 |
gtcattgaagagttcagcggtatcaa-aatgataccgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccat |
22643499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 155; Significance: 4e-82; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 210 - 396
Target Start/End: Complemental strand, 41375532 - 41375346
Alignment:
| Q |
210 |
tcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcattct |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
41375532 |
tcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccagcgtccatagcattct |
41375433 |
T |
|
| Q |
310 |
gcaacaagccttggatggtaggaatgcagggctcagggtccagcatgaactgggtacaccttaaaatgcagaatatgtgatgtccat |
396 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||| |
|
|
| T |
41375432 |
tcagcaagccttggacggtaggaatgcagggctcagggtccagcatgaactgggtacacctcaaaatgcagaacatatgatgtccat |
41375346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 9 - 396
Target Start/End: Original strand, 22080854 - 22081242
Alignment:
| Q |
9 |
tcagcagggtgatagcctcgatagttacgtctcaatccatccccgtaacagttatgccagttgttgcagaatcgacggcgaaccagtcgagggggcagta |
108 |
Q |
| |
|
|||||||| ||||| ||||||||||| || ||||||||||||||| |||||| ||||||||||||||||||||||| || | | | || ||||||| |
|
|
| T |
22080854 |
tcagcaggatgataccctcgatagttgcgcctcaatccatccccgcgacagttgtgccagttgttgcagaatcgacgacggattaactggggaggcagta |
22080953 |
T |
|
| Q |
109 |
atctcttgtaccagcc-tgaaacaaagcggaaacgggtgtccccgcctgttatctctctgcgataacgcgcaacgtttattgtctccaaaagagaccaga |
207 |
Q |
| |
|
|||||||||||||||| | | || |||||||||||||| ||||||||||||||||| |||||||| ||||| |||||| ||||||||||||||||||||| |
|
|
| T |
22080954 |
atctcttgtaccagccattagacgaagcggaaacgggtatccccgcctgttatctccctgcgatagcgcgcgacgtttcttgtctccaaaagagaccaga |
22081053 |
T |
|
| Q |
208 |
aatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcatt |
307 |
Q |
| |
|
|||||||||| ||| ||| | |||| || ||| ||| | |||||||||||||||||| |||||||| || ||||||||||| || |||||||| || || |
|
|
| T |
22081054 |
aatcatgaaagagttcagcagtatcaggtgtgataccatcaagcgccctcagcagtacgtcgaagtagagagcggtcacagaaccagcatccatggcgtt |
22081153 |
T |
|
| Q |
308 |
ctgcaacaagccttggatggtaggaatgcagggctcagggtccagcatgaactgggtacaccttaaaatgcagaatatgtgatgtccat |
396 |
Q |
| |
|
|| | || |||| || |||||||||||| |||||| |||| ||| || |||||||| || |||||||| || || |||||||||| |
|
|
| T |
22081154 |
cttaagaaaacctttgacggtaggaatgcatggctcaatatccaacataaattgggtacatctcaaaatgcaaaacatatgatgtccat |
22081242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 41375716 - 41375532
Alignment:
| Q |
1 |
gctcgtcctcagcagggtgatagcctcgatagttacgtctcaatccatccccgtaacagttatgccagttgttgcagaatcgacggcgaaccagtcgagg |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||| | |||||| ||||| |||||||||||||||| ||| |
|
|
| T |
41375716 |
gctcgtcctcagcagggtgataacctcgatagttgcgtctcaatccatccccgtgacagttgtaccagttattgcaaaatcgacggcgaaccaactaagg |
41375617 |
T |
|
| Q |
101 |
gggcagtaatctcttgtaccagcctgaaacaaagcggaaacgggtgtccccgcctgttatctctctgcgataacgcgcaacgttt |
185 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
41375616 |
aggcagtaatctcttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcgacgttt |
41375532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 307
Target Start/End: Complemental strand, 22799844 - 22799785
Alignment:
| Q |
248 |
aagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcatt |
307 |
Q |
| |
|
|||||||||||||| ||||| ||||| || ||| |||||||||| |||||||||||||| |
|
|
| T |
22799844 |
aagcgccctcagcatgacatcaaagtagagcgcgctcacagagccagcatccatagcatt |
22799785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0108 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: scaffold0108
Description:
Target: scaffold0108; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 6 - 304
Target Start/End: Original strand, 38791 - 39089
Alignment:
| Q |
6 |
tcctcagcagggtgatagcctcgatagttacgtctcaatccatccccgtaacagttatgccagttgttgcagaatcgacggcgaaccagtcgagggggca |
105 |
Q |
| |
|
||||||||||| ||| | ||||||||||| || || | |||||| || ||||| |||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
38791 |
tcctcagcaggatgaaatcctcgatagttgcgccttagtccatctccagggcagttttgccagttgttgcagaatcgacggcgaattaactgagggggca |
38890 |
T |
|
| Q |
106 |
gtaatctcttgtaccagcctgaaacaaagcggaaacgggtgtccccgcctgttatctctctgcgataacgcgcaacgtttattgtctccaaaagagacca |
205 |
Q |
| |
|
| || || |||||||||||||||| ||||||||| ||| ||| | ||| ||||||| ||||||||||||||||| ||| | ||||||||||||||||| |
|
|
| T |
38891 |
gcaaccttttgtaccagcctgaaatgaagcggaaatgggaatcctctcctattatctccctgcgataacgcgcaacatttttcgtctccaaaagagacca |
38990 |
T |
|
| Q |
206 |
gaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagc |
304 |
Q |
| |
|
|| |||| |||||| ||||| |||| | ||| ||||| |||||| ||||||| |||||| ||||| || ||||||||||| || ||||||||||| |
|
|
| T |
38991 |
aaagtcattgaaaagttcagcggtatcaggagtgataccgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccatagc |
39089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 6 - 304
Target Start/End: Complemental strand, 32947 - 32649
Alignment:
| Q |
6 |
tcctcagcagggtgatagcctcgatagttacgtctcaatccatccccgtaacagttatgccagttgttgcagaatcgacggcgaaccagtcgagggggca |
105 |
Q |
| |
|
||||||||||| ||| | ||||||||||| || || | |||||| || ||||| |||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
32947 |
tcctcagcaggatgaaatcctcgatagttgcgccttagtccatctccagggcagttttgccagttgttgcagaatcgacggcgaattaactgagggggca |
32848 |
T |
|
| Q |
106 |
gtaatctcttgtaccagcctgaaacaaagcggaaacgggtgtccccgcctgttatctctctgcgataacgcgcaacgtttattgtctccaaaagagacca |
205 |
Q |
| |
|
| || || |||||||||||||||| ||||||||| ||| ||| | ||| ||||||| ||||||||||||||||| ||| | ||||||||||||||||| |
|
|
| T |
32847 |
gcaaccttttgtaccagcctgaaatgaagcggaaatgggaatcctctcctattatctccctgcgataacgcgcaacatttttcgtctccaaaagagacca |
32748 |
T |
|
| Q |
206 |
gaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagc |
304 |
Q |
| |
|
|| |||| |||||| ||||| |||| | ||| ||||| |||||| ||||||| |||||| ||||| || ||||||||||| || ||||||||||| |
|
|
| T |
32747 |
aaagtcattgaaaagttcagcggtatcaggagtgataccgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccatagc |
32649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 89; Significance: 9e-43; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 9 - 309
Target Start/End: Original strand, 74318 - 74618
Alignment:
| Q |
9 |
tcagcagggtgatagcctcgatagttacgtctcaatccatccccgtaacagttatgccagttgttgcagaatcgacggcgaaccagtcgagggggcagta |
108 |
Q |
| |
|
|||||||| ||||| ||||| |||||||| || | |||||| || |||||| ||||||||||||||||||||||| || | | || ||||||| |
|
|
| T |
74318 |
tcagcaggatgataccctcggtagttacgccttagtccatctccacgacagttgtgccagttgttgcagaatcgacgacggattaacttgggaggcagta |
74417 |
T |
|
| Q |
109 |
atctcttgtaccagcctgaaacaaagcggaaacgggtgtccccgcctgttatctctctgcgataacgcgcaacgtttattgtctccaaaagagaccagaa |
208 |
Q |
| |
|
| ||||||||||||||||| || ||||| |||||||||||||| ||||||||||| |||||||| |||||||| ||| | ||||||||||||||||| || |
|
|
| T |
74418 |
acctcttgtaccagcctgagacgaagcgaaaacgggtgtcccctcctgttatctccctgcgatagcgcgcaacatttttcgtctccaaaagagaccaaaa |
74517 |
T |
|
| Q |
209 |
atcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcattc |
308 |
Q |
| |
|
|||| || ||| ||||| |||| || ||| ||||| ||| || |||| || |||||| ||||| || ||||||||||| || ||||||||||| ||| |
|
|
| T |
74518 |
ctcattgaagagttcagcggtatcaggtgtgataccgtcaagtgctctcaccattacatcaaagtaaagagcggtcacagaaccagcatccatagcgttc |
74617 |
T |
|
| Q |
309 |
t |
309 |
Q |
| |
|
| |
|
|
| T |
74618 |
t |
74618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0897 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0897
Description:
Target: scaffold0897; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 9 - 358
Target Start/End: Complemental strand, 4138 - 3789
Alignment:
| Q |
9 |
tcagcagggtgatagcctcgatagttacgtctcaatccatccccgtaacagttatgccagttgttgcagaatcgacggcgaaccagtcgagggggcagta |
108 |
Q |
| |
|
|||||||| ||| | ||||||||||| ||||| | |||||| || |||||| ||||||||||||||||||| ||| ||||| | || || ||||| | |
|
|
| T |
4138 |
tcagcaggatgaaaccctcgatagttgcgtcttagtccatctccacgacagttgtgccagttgttgcagaatcaacgacgaactaaccggggaggcagca |
4039 |
T |
|
| Q |
109 |
atctcttgtaccagcctgaaacaaagcggaaacgggtgtccccgcctgttatctctctgcgataacgcgcaacgtttattgtctccaaaagagaccagaa |
208 |
Q |
| |
|
| || |||||||||| ||| ||||||| |||| ||| ||||| ||||||||||| ||||||||||||||||| ||| ||||||||||||||||||| || |
|
|
| T |
4038 |
acctattgtaccagcatgagacaaagcagaaatgggaatcccctcctgttatctccctgcgataacgcgcaacattttttgtctccaaaagagaccaaaa |
3939 |
T |
|
| Q |
209 |
atcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcattc |
308 |
Q |
| |
|
|||| || ||| ||||| |||| | ||| |||| ||||| ||||||| |||||| ||||| || ||||||||||| || |||||||| || ||| |
|
|
| T |
3938 |
gtcattgaagagttcagcggtatcaggagtgatgccgtcgagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccatggcgttc |
3839 |
T |
|
| Q |
309 |
tgcaacaagccttggatggtaggaatgcagggctcagggtccagcatgaa |
358 |
Q |
| |
|
| | || | | ||||||||||||||| |||||| ||||||||||| |
|
|
| T |
3838 |
ttaagcagacgcttgatggtaggaatgcatggctcaacatccagcatgaa |
3789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0304 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: scaffold0304
Description:
Target: scaffold0304; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 57 - 308
Target Start/End: Complemental strand, 12526 - 12276
Alignment:
| Q |
57 |
cagttatgccagttgttgcagaatcgacggcgaaccagtcgagggggcagtaatctcttgtaccagcctgaaacaaagcggaaacgggtgtccccgcctg |
156 |
Q |
| |
|
||||| ||||||||||| ||||||||||| |||| | | ||||||||| || ||||||||||||||| ||||||||| |||| ||| || || |||| |
|
|
| T |
12526 |
cagttgtgccagttgtttcagaatcgacgacgaattaa-ctagggggcagcaacctcttgtaccagcctaaaacaaagcagaaatgggaatcgcctcctg |
12428 |
T |
|
| Q |
157 |
ttatctctctgcgataacgcgcaacgtttattgtctccaaaagagaccagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccct |
256 |
Q |
| |
|
||||||| ||||||||||||||||| ||| ||||||||||||||||||| || |||| |||||| || || |||| | ||| | ||| ||||||||| |
|
|
| T |
12427 |
ttatctccctgcgataacgcgcaacattttttgtctccaaaagagaccaaaagtcattgaaaagttcagtggtatcaggagtgatatcgtcaagcgccct |
12328 |
T |
|
| Q |
257 |
cagcagtacatcgaagtacagggcggtcacagagccggcatccatagcattc |
308 |
Q |
| |
|
||||| ||||| ||||| || ||| |||||||||| || |||||||||||| |
|
|
| T |
12327 |
cagcattacatgaaagtaaagagcgctcacagagccagcgtccatagcattc |
12276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0304; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 57 - 308
Target Start/End: Complemental strand, 18277 - 18027
Alignment:
| Q |
57 |
cagttatgccagttgttgcagaatcgacggcgaaccagtcgagggggcagtaatctcttgtaccagcctgaaacaaagcggaaacgggtgtccccgcctg |
156 |
Q |
| |
|
||||| ||||||||||| ||||||||||| |||| | | ||||||||| || ||||||||||||||| ||||||||| |||| ||| || || |||| |
|
|
| T |
18277 |
cagttgtgccagttgtttcagaatcgacgacgaattaa-ctagggggcagcaacctcttgtaccagcctaaaacaaagcagaaatgggaatcgcctcctg |
18179 |
T |
|
| Q |
157 |
ttatctctctgcgataacgcgcaacgtttattgtctccaaaagagaccagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccct |
256 |
Q |
| |
|
||||||| ||||||||||||||||| ||| ||||||||||||||||||| || |||| |||||| || || |||| | ||| | ||| ||||||||| |
|
|
| T |
18178 |
ttatctccctgcgataacgcgcaacattttttgtctccaaaagagaccaaaagtcattgaaaagttcagtggtatcaggagtgatatcgtcaagcgccct |
18079 |
T |
|
| Q |
257 |
cagcagtacatcgaagtacagggcggtcacagagccggcatccatagcattc |
308 |
Q |
| |
|
||||| ||||| ||||| || ||| |||||||||| || |||||||||||| |
|
|
| T |
18078 |
cagcattacatgaaagtaaagagcgctcacagagccagcgtccatagcattc |
18027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 6 - 308
Target Start/End: Complemental strand, 14562533 - 14562226
Alignment:
| Q |
6 |
tcctcagcagggtgatagcctcgatagttacgtctcaatccatccccgtaacagttatgccagttgttgcagaatcgacggcgaacca-----gtcgagg |
100 |
Q |
| |
|
||||||||||| ||| | ||||||||||| || || | |||||| || ||||| |||||||||||||||||||||||||||| | | | || |
|
|
| T |
14562533 |
tcctcagcaggatgaaatcctcgatagttgcgccttagtccatctccagggcagttgtgccagttgttgcagaatcgacggcgaattaactggggggggg |
14562434 |
T |
|
| Q |
101 |
gggcagtaatctcttgtaccagcctgaaacaaagcggaaacgggtgtccccgcctgttatctctctgcgataacgcgcaacgtttattgtctccaaaaga |
200 |
Q |
| |
|
|||||| || || ||||||||||||||||| ||||||||| ||| ||||| ||| ||||||| ||||||||||||||||| ||| | |||||||||||| |
|
|
| T |
14562433 |
gggcagcaaccttttgtaccagcctgaaacgaagcggaaatgggaatcccctcctattatctccctgcgataacgcgcaacatttttcgtctccaaaaga |
14562334 |
T |
|
| Q |
201 |
gaccagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatcca |
300 |
Q |
| |
|
||||| || |||| |||||| || || |||| | ||| ||||| || ||||||||||| |||||| ||||| || ||| |||||||||| || |||| |
|
|
| T |
14562333 |
gaccaaaagtcattgaaaagttcagtggcatcaggagtgataccgtcaatcgccctcagcattacatcaaagtaaagagcgctcacagagccagcgtcca |
14562234 |
T |
|
| Q |
301 |
tagcattc |
308 |
Q |
| |
|
|||||||| |
|
|
| T |
14562233 |
tagcattc |
14562226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 6 - 304
Target Start/End: Complemental strand, 13284670 - 13284372
Alignment:
| Q |
6 |
tcctcagcagggtgatagcctcgatagttacgtctcaatccatccccgtaacagttatgccagttgttgcagaatcgacggcgaaccagtcgagggggca |
105 |
Q |
| |
|
||||||||||| ||| ||||||||||| |||||||| ||||| || ||||| |||||||||||||||||||| || |||| | ||||||| |
|
|
| T |
13284670 |
tcctcagcaggatgaattcctcgatagttgcgtctcaacccatctccagggcagttgtgccagttgttgcagaatcggcgacgaattaactaggggggca |
13284571 |
T |
|
| Q |
106 |
gtaatctcttgtaccagcctgaaacaaagcggaaacgggtgtccccgcctgttatctctctgcgataacgcgcaacgtttattgtctccaaaagagacca |
205 |
Q |
| |
|
| || |||||||||||||||||||| ||||| ||| || |||||| || |||||||| ||||||||||| ||||| || | ||||||||||||||||| |
|
|
| T |
13284570 |
gcaacctcttgtaccagcctgaaacgaagcgaaaataggagtcccctcccgttatctccctgcgataacgagcaacattcttcgtctccaaaagagacca |
13284471 |
T |
|
| Q |
206 |
gaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagc |
304 |
Q |
| |
|
|| |||| || ||| || || |||| | ||| ||||| |||||||||||||| |||||| ||||| || ||| |||||||||| || |||||||| |
|
|
| T |
13284470 |
aaagtcattgaagagttcagtggtatcaggagtgataccgtcaagcgccctcagcattacatcaaagtaaagagcgctcacagagccagcgtccatagc |
13284372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 304
Target Start/End: Complemental strand, 14742016 - 14741960
Alignment:
| Q |
248 |
aagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagc |
304 |
Q |
| |
|
|||||||||||||| ||||| ||||| || ||| |||||||||| ||||||||||| |
|
|
| T |
14742016 |
aagcgccctcagcatgacatcaaagtagagcgcgctcacagagccagcatccatagc |
14741960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0319 (Bit Score: 79; Significance: 8e-37; HSPs: 2)
Name: scaffold0319
Description:
Target: scaffold0319; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 57 - 307
Target Start/End: Original strand, 19335 - 19584
Alignment:
| Q |
57 |
cagttatgccagttgttgcagaatcgacggcgaaccagtcgagggggcagtaatctcttgtaccagcctgaaacaaagcggaaacgggtgtccccgcctg |
156 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||| | | |||||||| || |||||||||||||||||||| ||| ||||| ||| ||||| |||| |
|
|
| T |
19335 |
cagttgtgccagttgttgcagaatcgacgacgaattaactg-gggggcagcaacctcttgtaccagcctgaaacgaagtggaaatgggaatcccctcctg |
19433 |
T |
|
| Q |
157 |
ttatctctctgcgataacgcgcaacgtttattgtctccaaaagagaccagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccct |
256 |
Q |
| |
|
||||||| ||||||||||||||||| ||| ||||||||||||||||||| || |||| |||||| || || |||| | ||| ||||| || |||| | |
|
|
| T |
19434 |
ttatctccctgcgataacgcgcaacattttttgtctccaaaagagaccaaaagtcattgaaaagttcagtggcatcaggagtgataccgtcaatcgccat |
19533 |
T |
|
| Q |
257 |
cagcagtacatcgaagtacagggcggtcacagagccggcatccatagcatt |
307 |
Q |
| |
|
||| | |||||| ||||| || ||| |||||||||| || ||||||||||| |
|
|
| T |
19534 |
cagaattacatcaaagtaaagagcgctcacagagccagcgtccatagcatt |
19584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0319; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 308
Target Start/End: Original strand, 13680 - 13746
Alignment:
| Q |
242 |
accgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcattc |
308 |
Q |
| |
|
||||| || ||||||||||| |||||| ||||| || ||| |||||||||| || |||||||||||| |
|
|
| T |
13680 |
accgtcaatcgccctcagcattacatcaaagtaaagagcgctcacagagccagcgtccatagcattc |
13746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 6 - 308
Target Start/End: Original strand, 35865 - 36167
Alignment:
| Q |
6 |
tcctcagcagggtgatagcctcgatagttacgtctcaatccatccccgtaacagttatgccagttgttgcagaatcgacggcgaaccagtcgagggggca |
105 |
Q |
| |
|
||||||||||| ||| | ||||||||||| ||||||| ||||| | ||||| |||||||||||||||||||| || |||| | | || |||| |
|
|
| T |
35865 |
tcctcagcaggatgaaaccctcgatagttgcgtctcagcccatctctagggcagttgtgccagttgttgcagaatcggcgacgaattaactggggcggca |
35964 |
T |
|
| Q |
106 |
gtaatctcttgtaccagcctgaaacaaagcggaaacgggtgtccccgcctgttatctctctgcgataacgcgcaacgtttattgtctccaaaagagacca |
205 |
Q |
| |
|
| || |||||||||||||||||||| ||||| || ||| |||||| ||||||||||| ||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
35965 |
gcaacctcttgtaccagcctgaaacgaagcgaaagtgggagtcccctcctgttatctccctgcgataacgcgcaacattctttgtctccaaaagagacca |
36064 |
T |
|
| Q |
206 |
gaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagca |
305 |
Q |
| |
|
||| |||| || ||| || | |||| | ||| ||||| |||||||||||||| |||||| ||||| || ||| | || || || || ||||||||| |
|
|
| T |
36065 |
gaagtcattgaagagttcagtgatatcaggagtgataccgtcaagcgccctcagcattacatcaaagtaaagagcgtttacggaaccagcgtccatagca |
36164 |
T |
|
| Q |
306 |
ttc |
308 |
Q |
| |
|
||| |
|
|
| T |
36165 |
ttc |
36167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 111 - 304
Target Start/End: Original strand, 28605 - 28798
Alignment:
| Q |
111 |
ctcttgtaccagcctgaaacaaagcggaaacgggtgtccccgcctgttatctctctgcgataacgcgcaacgtttattgtctccaaaagagaccagaaat |
210 |
Q |
| |
|
|||||||||||||||||||| ||||| ||| ||| |||||| ||||||||||| ||||||||||||||||| ||| | ||||||||||||||||| || | |
|
|
| T |
28605 |
ctcttgtaccagcctgaaacgaagcgaaaatgggagtcccctcctgttatctccctgcgataacgcgcaacatttttcgtctccaaaagagaccaaaagt |
28704 |
T |
|
| Q |
211 |
catgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagc |
304 |
Q |
| |
|
|| || ||| || || |||| | ||| ||||| |||||||||||||| |||||| ||||| || ||| | |||||||| || |||||||| |
|
|
| T |
28705 |
caatgaagagttcagtggtatcatgagtgataccgtcaagcgccctcagcattacatcaaagtaaagagcgcttacagagccagcgtccatagc |
28798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0107 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0107
Description:
Target: scaffold0107; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 308
Target Start/End: Original strand, 9280 - 9340
Alignment:
| Q |
248 |
aagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcattc |
308 |
Q |
| |
|
|||||||||||||| | ||| ||||| || ||| |||| ||||||||||||||||||||| |
|
|
| T |
9280 |
aagcgccctcagcatgatatcaaagtagagtgcgctcacggagccggcatccatagcattc |
9340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 308
Target Start/End: Original strand, 384862 - 384922
Alignment:
| Q |
248 |
aagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcattc |
308 |
Q |
| |
|
||||||||||| || ||||| ||||| || || |||||||||||||||||||||||||| |
|
|
| T |
384862 |
aagcgccctcaacatgacatcaaagtagagctcgctcacagagccggcatccatagcattc |
384922 |
T |
|
Back To:
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