View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6854_high_28 (Length: 278)
Name: NF6854_high_28
Description: NF6854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6854_high_28 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 34955684 - 34955963
Alignment:
| Q |
1 |
taagcttaggtgacaatttctttccaaaagataaatggtgtatggcatgcgacatgttcatttgagaagcatcaaatgaatgggcatcggatcttgctga |
100 |
Q |
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| T |
34955684 |
taagcttaggtgacaatttctttccaaaagataaatggtgtacggcatgcgacatgttcatttgagaagcatcaaatgaatgggcatcggatcttgctga |
34955783 |
T |
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| Q |
101 |
gatgatcaagtttcctggaacctgcagagtgcaaaacagcttacgtttcggcataatatttaaaatac--agagaaaaataataggaagtcatatgccgt |
198 |
Q |
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| T |
34955784 |
gatgatcaagtttcctggaacctgcagagtgcaaaacagcttatgtttcggcataatatttaaaatacagagagaaaaataataggaagtcatatgccgt |
34955883 |
T |
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| Q |
199 |
atattatatcatttatttctgctgttataatattgacaactgaagcttctattataatgcaaaagaaaaattaaaaacaa |
278 |
Q |
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| T |
34955884 |
atattatatcatttatttctgctgttataatattgacaactgaagcttctattataatgcaaaagaaaaattaaaaacaa |
34955963 |
T |
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Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 126
Target Start/End: Complemental strand, 31391785 - 31391666
Alignment:
| Q |
7 |
taggtgacaatttctttccaaaagataaatggtgtatggcatgcgacatgttcatttgagaagcatcaaatgaatgggcatcggatcttgctgagatgat |
106 |
Q |
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|||||| || ||| ||||||||||||| ||||| ||| |||| |||||||||||||||||||||||||||||||| ||||| ||||| ||||||| | |
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| T |
31391785 |
taggtgtcactttttttccaaaagatagatggttgatgacatgtgacatgttcatttgagaagcatcaaatgaatgtgcatctgatctagctgagacaac |
31391686 |
T |
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| Q |
107 |
caagtttcctggaacctgca |
126 |
Q |
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| T |
31391685 |
caagcttcctggaacctgca |
31391666 |
T |
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