View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6854_high_3 (Length: 886)
Name: NF6854_high_3
Description: NF6854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6854_high_3 |
 | |
|
| [»] scaffold0199 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 456; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 1 - 519
Target Start/End: Original strand, 299552 - 300071
Alignment:
| Q |
1 |
attcatgtgtaagtgtctctgttcgtgtggcatctcttgcgtaaccggctacctacaaaagacaatctaatgcagcggaatattattcatgcaactgatt |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
299552 |
attcctgtgtaagtgtctctgttcgtgtagcgtctcttgcgtaatcggctacctacaaaagacaatctaatgcagcggaatattattcatgcaacttatt |
299651 |
T |
|
| Q |
101 |
tggcttgcgtcaatgggtgtggagtcgccgaaacagcaacggatctatttattgattgtgatttggcttcctccttgtggaatcttgtctgaaattggtt |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
299652 |
tggcttgcgtcaatgggtgtggagttgccgaaacagcaacggatctatttattgattgtgatttggcttgctccttgtggactcttgtctgaaattggtt |
299751 |
T |
|
| Q |
201 |
agggatcacggtggttgctccgtgtcaattacgtgatcattgcattcaggtttctatcatgggagggatgtcgcgtggtact-acttgttctttaaggtc |
299 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
299752 |
agggatcacggtggttgctccgtgtcagttatgtgatcattgcattcaagtttctatcatgggagggatgtcgcgtggtactcacttgttctttaaggtc |
299851 |
T |
|
| Q |
300 |
atctggtttgcttgtgtttgggtaatttggaaggaacataataatcgcattttcaaaaatatgatggttactcctttggtccttgttgagaaagtaaagc |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
299852 |
atctggtttgcttgtgtttgggtaatttggaaggaacataataatcgcattttcaaaaatatgatggttactcctttggtccttgttgagaaagtaaagc |
299951 |
T |
|
| Q |
400 |
tactctcttttttgtggttgaaagctaaacagacatgcttttgttattgctatcatgattggtggagacatccgctaccttgtatgggtgtccattaatt |
499 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
299952 |
tactctcttttttatggttgaaagctaaacaaacatgcttttgttattgctatcatgattggtggagacatccgctaccttgtatgggtgtccactaatt |
300051 |
T |
|
| Q |
500 |
tttgtctgttttgctggtac |
519 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
300052 |
tttgtctgttttgctggtac |
300071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 1 - 621
Target Start/End: Complemental strand, 30953471 - 30952849
Alignment:
| Q |
1 |
attcatgtgtaagtgtctctgttcgtgtggcatctcttgcgtaaccggctacctacaaaagacaatctaatgcagcggaatattattcatgcaactgatt |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||| | |||||||||||||||| | ||||| ||||||||| || ||| |||||||||||| ||| || || || |
|
|
| T |
30953471 |
attcatgtgaaagtgtctctgttcgtgtgacgtctcttgcgtaaccggttgcctactaaagacaatttattgcgacggaatattattaatgtaaatggtt |
30953372 |
T |
|
| Q |
101 |
tggcttgcgtcaatgggtgtggagtcgccgaaacagcaacggatctatttattgattgtgatttggcttcctccttgtggaatcttgtctgaaattggtt |
200 |
Q |
| |
|
|| |||| ||||||||| |||||||||| ||| |||| || |||| ||||||| ||| |||||||| || || ||||||| ||||||||| |||||||| |
|
|
| T |
30953371 |
tgccttgtgtcaatgggcgtggagtcgctgaatcagctactaatctctttattgtttgcgatttggcatcttctttgtggattcttgtctgtaattggtt |
30953272 |
T |
|
| Q |
201 |
agggatcacggtggttgctccgtgtcaattacgtgatcattgcattcaggtttctatcatgggagggatgtcgcgtggtact-acttgttctttaaggtc |
299 |
Q |
| |
|
||||||||| |||||||||| ||||| | |||||||||||||||||||||||| || ||| ||||||||||||||||||| || |||||||||||||| |
|
|
| T |
30953271 |
agggatcacaatggttgctccttgtcagattcgtgatcattgcattcaggtttctttcgtggcagggatgtcgcgtggtactcacgtgttctttaaggtc |
30953172 |
T |
|
| Q |
300 |
atctggtttgcttgtgtttgggtaatttggaaggaacataataatcgcattttcaaaaatatgatggttactcctttggtccttgttgagaaagtaaagc |
399 |
Q |
| |
|
|| |||||||||||||| || |||||||||||| ||| ||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||| | |
|
|
| T |
30953171 |
atatggtttgcttgtgtctgagtaatttggaagaaacgtaataatcgtattttcaaaaatatgatgactactcctttggtcctttttgagaaagtacaat |
30953072 |
T |
|
| Q |
400 |
tactctcttttttgtggttgaaagctaaacagacatgcttttgttattgctatcatgattggtggagacatccgctaccttgtatgggtgtccattaatt |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| ||||| | | |||||||||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
30953071 |
tactctcttttttgtggttgaaagctaaacagacatccttttactattgttttaatgattggtggagacatccgctaccttgtatgggtgtccactgatt |
30952972 |
T |
|
| Q |
500 |
tttgtctgttttgctggtacnnnnnnngtct--ctgtgtctgtaaactctgatcggtggtgttttgtgcactccttgtacatgaagcttcctcattgttg |
597 |
Q |
| |
|
|||||||||||||||| | | || ||||||||||||| |||| ||||||||| | |||||||||| | |||| |||||| | |||||| |
|
|
| T |
30952971 |
tttgtctgttttgctgttgtttttattggcttatagtgtctgtaaactttgattggtggtgttctttgcactccttctgcatggggcttcc-cgttgttg |
30952873 |
T |
|
| Q |
598 |
attatatatatatcattttgattt |
621 |
Q |
| |
|
|||||||||||| ||||||||||| |
|
|
| T |
30952872 |
attatatatataacattttgattt |
30952849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 1 - 621
Target Start/End: Complemental strand, 30969283 - 30968661
Alignment:
| Q |
1 |
attcatgtgtaagtgtctctgttcgtgtggcatctcttgcgtaaccggctacctacaaaagacaatctaatgcagcggaatattattcatgcaactgatt |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||| | |||||||||||||||| | ||||| ||||||||| || ||| |||||||||||| ||| || || || |
|
|
| T |
30969283 |
attcatgtgaaagtgtctctgttcgtgtgacgtctcttgcgtaaccggttgcctactaaagacaatttattgcgacggaatattattaatgtaaatggtt |
30969184 |
T |
|
| Q |
101 |
tggcttgcgtcaatgggtgtggagtcgccgaaacagcaacggatctatttattgattgtgatttggcttcctccttgtggaatcttgtctgaaattggtt |
200 |
Q |
| |
|
|| |||| ||||||||| |||||||||| ||| |||| || |||| ||||||| ||| |||||||| || || ||||||| ||||||||| |||||||| |
|
|
| T |
30969183 |
tgccttgtgtcaatgggcgtggagtcgctgaatcagctactaatctctttattgtttgcgatttggcatcttctttgtggattcttgtctgtaattggtt |
30969084 |
T |
|
| Q |
201 |
agggatcacggtggttgctccgtgtcaattacgtgatcattgcattcaggtttctatcatgggagggatgtcgcgtggtact-acttgttctttaaggtc |
299 |
Q |
| |
|
||||||||| |||||||||| ||||| | |||||||||||||||||||||||| || ||| ||||||||||||||||||| || |||||||||||||| |
|
|
| T |
30969083 |
agggatcacaatggttgctccttgtcagattcgtgatcattgcattcaggtttctttcgtggcagggatgtcgcgtggtactcacgtgttctttaaggtc |
30968984 |
T |
|
| Q |
300 |
atctggtttgcttgtgtttgggtaatttggaaggaacataataatcgcattttcaaaaatatgatggttactcctttggtccttgttgagaaagtaaagc |
399 |
Q |
| |
|
|| |||||||||||||| || |||||||||||| ||| ||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||| | |
|
|
| T |
30968983 |
atatggtttgcttgtgtctgagtaatttggaagaaacgtaataatcgtattttcaaaaatatgatgactactcctttggtcctttttgagaaagtacaat |
30968884 |
T |
|
| Q |
400 |
tactctcttttttgtggttgaaagctaaacagacatgcttttgttattgctatcatgattggtggagacatccgctaccttgtatgggtgtccattaatt |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| ||||| | | |||||||||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
30968883 |
tactctcttttttgtggttgaaagctaaacagacatccttttactattgttttaatgattggtggagacatccgctaccttgtatgggtgtccactgatt |
30968784 |
T |
|
| Q |
500 |
tttgtctgttttgctggtacnnnnnnngtct--ctgtgtctgtaaactctgatcggtggtgttttgtgcactccttgtacatgaagcttcctcattgttg |
597 |
Q |
| |
|
|||||||||||||||| | | || ||||||||||||| |||| ||||||||| | |||||||||| | |||| |||||| | |||||| |
|
|
| T |
30968783 |
tttgtctgttttgctgttgtttttattggcttatagtgtctgtaaactttgattggtggtgttctttgcactccttctgcatggggcttcc-cgttgttg |
30968685 |
T |
|
| Q |
598 |
attatatatatatcattttgattt |
621 |
Q |
| |
|
|||||||||||| ||||||||||| |
|
|
| T |
30968684 |
attatatatataacattttgattt |
30968661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 1 - 493
Target Start/End: Original strand, 43182942 - 43183435
Alignment:
| Q |
1 |
attcatgtgtaagtgtctctgttcgtgtggcatctcttgcgtaaccggctacctacaaaagacaatctaatgcagcggaatattattcatgcaactgatt |
100 |
Q |
| |
|
|||| |||| |||| ||| |||| ||||||| ||||||||| ||||| || || ||||||| | | || || ||||||||| ||||| |||| || | |
|
|
| T |
43182942 |
attcctgtgaaagtatctttgttagtgtggcgtctcttgcgcaaccgacttccatcaaaagatattttattgaggcggaatatcattcaagcaaacgact |
43183041 |
T |
|
| Q |
101 |
tggcttgcgtcaatgggtgtggagtcgccgaaacagcaacggatctatttattgattgtgatttggcttcctccttgtggaatcttgtctgaaattggtt |
200 |
Q |
| |
|
|||| || || | ||||||||||| ||||||||| | | || ||| ||||||| || ||| ||| || |||||| ||||||||| |||||| | |
|
|
| T |
43183042 |
tggcctgtgtaactgggtgtggagctttcgaaacagctaatcacctttttcttgattgcgagttgtcttattcattgtggcttcttgtctggaattggat |
43183141 |
T |
|
| Q |
201 |
agggatcacggtggttgctccgtgtcaattacgtgatcattgcattcaggtttctatcatgggagggatgtcgcgtggtact-acttgttctttaaggtc |
299 |
Q |
| |
|
|||| || |||||||| |||| ||||| | ||||| |||| ||| ||| | || |||||| |||||| |||||| |||| ||| || ||||||||| |
|
|
| T |
43183142 |
agggctctcggtggttcctccttgtcagattcgtgagcatttcatccagatgtccttcatggcggggatgccgcgtgatactcactcgtactttaaggtt |
43183241 |
T |
|
| Q |
300 |
atctggtttgcttgtgtttgggtaatttggaaggaacataataatcgcattttcaaaaatatgatggttactcctttggtccttgttgagaaagtaaagc |
399 |
Q |
| |
|
| |||||||||||||| | ||||||||||||||||||||||||||| ||||| |||||| || || |||| | ||||||||| |||||| ||| ||| |
|
|
| T |
43183242 |
ctatggtttgcttgtgtctaggtaatttggaaggaacataataatcgtatttttaaaaatttggtgtctactaccttggtcctttttgagagagtcaagt |
43183341 |
T |
|
| Q |
400 |
tactctcttttttgtggttgaaagctaaacagacatgcttttgttattgctatcatgattggtggagacatccgctaccttgtatgggtgtcca |
493 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||| ||||| |||||| |||| || ||||||||| ||||||||| ||||||||| |||||| |
|
|
| T |
43183342 |
tactttcttttttgtggttgaaagctaaacatgcatccttttattattgttatcgtgcttggtggaggcatccgctatcttgtatggatgtcca |
43183435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 760 - 860
Target Start/End: Original strand, 300544 - 300646
Alignment:
| Q |
760 |
taaaaacattgaaaatgtacaaaaagttgtgcacaattgttgggagctacaacaaattgattactagtagtatgc--atattgtgtacaattactgcaag |
857 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
300544 |
taaaaacattgaaaatgtacaaaaagttgtgcacaattgttgggagctacaacaaattgattactagtagtatgcatatattgtgtacaattactgcaag |
300643 |
T |
|
| Q |
858 |
gta |
860 |
Q |
| |
|
||| |
|
|
| T |
300644 |
gta |
300646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 691 - 768
Target Start/End: Original strand, 300089 - 300166
Alignment:
| Q |
691 |
gagacggaggaagcacgtatgttttgtgtttcactttactttttatttttattgttctgaaataataaataaaaacat |
768 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
300089 |
gagacggaggaagcacatatgttttgtgtttcactttactttttatttttattgttctgaaataataaataaaaacat |
300166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 188; Significance: 1e-101; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 35 - 621
Target Start/End: Original strand, 3170144 - 3170738
Alignment:
| Q |
35 |
tcttgcgtaaccggctacctacaaaagacaatctaatgcagcggaatattattcatgcaactgatttggcttgcgtcaatgggtgtggagtcgccgaaac |
134 |
Q |
| |
|
|||| ||||||||||| ||||| ||||| |||| | ||| | |||||||| ||||||||| ||| ||||||||||| |||||||||||| | |||||||| |
|
|
| T |
3170144 |
tcttccgtaaccggctgcctactaaagataatccattgcggaggaatattgttcatgcaaatgacttggcttgcgtaaatgggtgtggattagccgaaac |
3170243 |
T |
|
| Q |
135 |
agcaacggatctatttattgattgtgatttggcttcctccttgtggaatcttgtctgaaattggttagggatcacggtggttgctccgtgtcaattacgt |
234 |
Q |
| |
|
| | || || | ||| | || ||||| ||| | || || |||||| ||||||||| |||||| |||||||| ||||||||||||||||||| | ||| |
|
|
| T |
3170244 |
aactactcatatctttctagactgtgaattgtcctcttctttgtggcttcttgtctggaattggatagggatctcggtggttgctccgtgtcagattcgt |
3170343 |
T |
|
| Q |
235 |
gatcattgcattcaggtttctatcatgggagggatgtcgcgtggtact-acttgttctttaaggtcatctggtttgcttgtgtttgggtaatttggaagg |
333 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||| |||||| |||| ||| ||| || ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
3170344 |
gatcattgcattcaggtttctttcatggaagggatgacgcgtgatactcactcgtttttcaaggtcatctggtttgcttgtgtctgggtaatttggaagg |
3170443 |
T |
|
| Q |
334 |
aacataataatcgcattttcaaaaatatgatggttactcctttggtccttgttgagaaagtaaagctactctcttttt-tgtggttgaaagctaaacaga |
432 |
Q |
| |
|
| | ||||||||| ||||||||||||||| || ||||| |||||| ||| |||||||||||| || |||||||||| ||||||||||||||||||| |
|
|
| T |
3170444 |
agcgtaataatcgtattttcaaaaatatggtgtctactcatttggttcttaatgagaaagtaaaacttctctctttttgtgtggttgaaagctaaacatg |
3170543 |
T |
|
| Q |
433 |
catgcttttgttattgctatcatgattggtggagacatccgctaccttgtatgggtgtccattaatttttgtctgttttgctggtac---nnnnnnngtc |
529 |
Q |
| |
|
||| ||||||| ||| ||||| |||||||||| |||||||||||||||||||||| |||| | | |||||||| |||| ||||| | || |
|
|
| T |
3170544 |
catccttttgtcattattatcaagattggtggaaacatccgctaccttgtatgggtatccactga-ttttgtctattttcctggtgcttttgtttggctc |
3170642 |
T |
|
| Q |
530 |
tctgtgtctgtaaactctgatcggtggtgttttgtgcactccttgtacatgaagcttcctcattgttg----attatatatatatcattttgattt |
621 |
Q |
| |
|
| |||||||||||||| |||| ||||||||| | |||||||||||| |||| |||||| || | |||| | |||||||||| ||||||||||| |
|
|
| T |
3170643 |
tttgtgtctgtaaactttgattggtggtgttctttgcactccttgtgcatggagcttcgtcgtcgttgttttaatatatatatagcattttgattt |
3170738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 450 - 491
Target Start/End: Complemental strand, 21270074 - 21270033
Alignment:
| Q |
450 |
tatcatgattggtggagacatccgctaccttgtatgggtgtc |
491 |
Q |
| |
|
||||||||||||||| ||||||| |||| ||||||||||||| |
|
|
| T |
21270074 |
tatcatgattggtggcgacatccactactttgtatgggtgtc |
21270033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 450 - 491
Target Start/End: Complemental strand, 21272088 - 21272047
Alignment:
| Q |
450 |
tatcatgattggtggagacatccgctaccttgtatgggtgtc |
491 |
Q |
| |
|
||||||||||||||| ||||||| |||| ||||||||||||| |
|
|
| T |
21272088 |
tatcatgattggtggcgacatccactactttgtatgggtgtc |
21272047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 181; Significance: 2e-97; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 11 - 513
Target Start/End: Original strand, 50649912 - 50650416
Alignment:
| Q |
11 |
aagtgtctctgttcgtgtggcatctcttgcgtaaccggctacctacaaaagacaatctaatgcagcggaatattattcatgcaactgatttggcttgcgt |
110 |
Q |
| |
|
|||||||| |||| | ||| | |||||||||||||||||| || | ||||| | |||| || | |||||||||||||||||| ||| ||| |||| || |
|
|
| T |
50649912 |
aagtgtctttgtttgcgtgacgtctcttgcgtaaccggctgtcttctaaagatattctattgaggtggaatattattcatgcaaatgacttgacttgtgt |
50650011 |
T |
|
| Q |
111 |
caatgggtgtggagtcgccgaaacagcaacggatctatttattgattgtgatttggcttcctccttgtggaatcttgtctgaaattggttagggatcacg |
210 |
Q |
| |
|
| |||||||||| ||||||| ||| || |||| ||| |||||| |||||| || ||||||||| ||||| ||| |||||| | |||||| || |
|
|
| T |
50650012 |
aaccgggtgtggagcggccgaaatagctactcatctctttcttgattacgatttgtactcttccttgtggcttcttgcctggaattggattgggatctcg |
50650111 |
T |
|
| Q |
211 |
gtggttgctccgtgtcaattacgtgatcattgcattcaggtttctatcatgggagggatgtcgcgtggtact-acttgttctttaaggtcatctggtttg |
309 |
Q |
| |
|
||||||||||| ||||| | ||||||||||||||||||||||| |||||| |||||||||| |||||||| ||| |||||||||||| |||||||||| |
|
|
| T |
50650112 |
gtggttgctccttgtcagatccgtgatcattgcattcaggtttcattcatggtagggatgtcgtgtggtactcactcgttctttaaggttatctggtttg |
50650211 |
T |
|
| Q |
310 |
cttgtgtttgggtaatttggaaggaacataataatcgcattttcaaaaatatgatggttactcctttggtccttgttgagaaagtaaagctactctcttt |
409 |
Q |
| |
|
||||||| || |||||||| ||||||| ||||||||| ||||||||||||||| || |||||| ||||||||| |||||||||||||| |||||||||| |
|
|
| T |
50650212 |
cttgtgtctgagtaatttgaaaggaacgtaataatcgtattttcaaaaatatggtgtctactcccttggtccttattgagaaagtaaagttactctcttt |
50650311 |
T |
|
| Q |
410 |
tttgtggttgaaagctaaacagacatgc-ttttgttattgctatcatgattggtggagacatccgctaccttgtatgggtgtccattaatttttgtctgt |
508 |
Q |
| |
|
||||||||||||||||||||| ||| | |||| ||| || ||||||||| |||||||||||| ||||||||| ||||| ||||| | |||| ||||||| |
|
|
| T |
50650312 |
tttgtggttgaaagctaaacaagcatccttttttttactgttatcatgataggtggagacatctgctaccttgcatgggggtccactgatttatgtctgt |
50650411 |
T |
|
| Q |
509 |
tttgc |
513 |
Q |
| |
|
||||| |
|
|
| T |
50650412 |
tttgc |
50650416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 306 - 515
Target Start/End: Original strand, 3071239 - 3071447
Alignment:
| Q |
306 |
tttgcttgtgtttgggtaatttggaaggaacataataatcgcattttcaaaaatatgatggttactcctttggtccttgttgagaaagtaaagctactct |
405 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||| | |||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
3071239 |
tttgcttgtgtctgggtaatttggaaggaacgtaataatcgtattttcaaaaatacgggttctactcctttggtcctttttgagaaagtaaagcttctct |
3071338 |
T |
|
| Q |
406 |
cttttttgtggttgaaagctaaacagacatgcttttgttattgctatcatgattggtggagacatccgctaccttgtatgggtgtccattaatttttgtc |
505 |
Q |
| |
|
||||||| |||||||||| ||||| |||| |||||||||||| ||||||||||||||||||| |||||||||||| ||||||| | | ||||||||||| |
|
|
| T |
3071339 |
cttttttttggttgaaagtcaaacaaacatccttttgttattgttatcatgattggtggagacctccgctaccttg-atgggtgccaactaatttttgtc |
3071437 |
T |
|
| Q |
506 |
tgttttgctg |
515 |
Q |
| |
|
|||||||||| |
|
|
| T |
3071438 |
tgttttgctg |
3071447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 316 - 517
Target Start/End: Complemental strand, 40388837 - 40388630
Alignment:
| Q |
316 |
tttgggtaatttggaaggaacataataatcgcattttcaaaaatatgatggttactcctttggtccttgttgagaaagtaaagctactctcttttttgtg |
415 |
Q |
| |
|
||||| |||||||||||||| ||||| || || |||||||||| | | |||||| ||||| || ||||||||| ||| ||||||| |||||||| |
|
|
| T |
40388837 |
tttggataatttggaaggaatgtaatagacgtatcttcaaaaatacggcgtctactccattggttctgattgagaaagccaagttactctcatttttgtg |
40388738 |
T |
|
| Q |
416 |
gttgaaagctaaacagacatgcttttgttattgctatcatgattggtggagacatccgctaccttgtatgggtgtccattaat------ttttgtctgtt |
509 |
Q |
| |
|
||||||||| ||||| | | ||| ||| || |||||||||||||||| ||||||||||| |||||||| |||||| |||| ||||||||||| |
|
|
| T |
40388737 |
gttgaaagcaaaacaagcgtcttttatttactgttatcatgattggtggaaacatccgctactttgtatggatgtccactaattaattattttgtctgtt |
40388638 |
T |
|
| Q |
510 |
ttgctggt |
517 |
Q |
| |
|
|||||||| |
|
|
| T |
40388637 |
ttgctggt |
40388630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 443 - 491
Target Start/End: Complemental strand, 13531400 - 13531352
Alignment:
| Q |
443 |
ttattgctatcatgattggtggagacatccgctaccttgtatgggtgtc |
491 |
Q |
| |
|
|||||| |||||||||||||||||| | ||||| ||||||||||||||| |
|
|
| T |
13531400 |
ttattgttatcatgattggtggagatacccgctgccttgtatgggtgtc |
13531352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 532 - 573
Target Start/End: Original strand, 3071465 - 3071506
Alignment:
| Q |
532 |
tgtgtctgtaaactctgatcggtggtgttttgtgcactcctt |
573 |
Q |
| |
|
|||||||||||||| |||||||||||||| | |||||||||| |
|
|
| T |
3071465 |
tgtgtctgtaaactttgatcggtggtgttctttgcactcctt |
3071506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 534 - 575
Target Start/End: Original strand, 50650439 - 50650480
Alignment:
| Q |
534 |
tgtctgtaaactctgatcggtggtgttttgtgcactccttgt |
575 |
Q |
| |
|
|||||||||||| |||||||||||||| | |||||||||||| |
|
|
| T |
50650439 |
tgtctgtaaactttgatcggtggtgttctttgcactccttgt |
50650480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 167; Significance: 6e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 6e-89
Query Start/End: Original strand, 58 - 515
Target Start/End: Original strand, 33154456 - 33154914
Alignment:
| Q |
58 |
aaagacaatctaatgcagcggaatattattcatgcaactgatttggcttgcgtcaatgggtgtggagtcgccgaaacagcaacggatctatttattgatt |
157 |
Q |
| |
|
||||| ||||| |||| || |||||||||| ||| || ||| |||||||| || || |||||||||| | |||| |||| || |||| ||| ||| || |
|
|
| T |
33154456 |
aaagataatcttatgcggcagaatattattaatgtaaatgacttggcttgtgttaacgggtgtggagcggtcgaatcagctactcatctttttcttggtt |
33154555 |
T |
|
| Q |
158 |
gtgatttggcttcctccttgtggaatcttgtctgaaattggttagggatcacggtggttgctccgtgtcaattacgtgatcattgcattcaggtttctat |
257 |
Q |
| |
|
|||| ||| | || ||||| || |||||||||||||||| | | |||||| |||||||| || || | | | |||||||||||||| || ||| | |
|
|
| T |
33154556 |
gtgagttgtcatcttccttcgggcttcttgtctgaaattggattgagatcacagtggttgccccttgctagattcaggatcattgcattcatgtctcttt |
33154655 |
T |
|
| Q |
258 |
catgggagggatgtcgcgtggtact-acttgttctttaaggtcatctggtttgcttgtgtttgggtaatttggaaggaacataataatcgcattttcaaa |
356 |
Q |
| |
|
||||| | |||||||||| |||||| ||| |||||||||||| || ||||||| |||||| ||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
33154656 |
catggcaaggatgtcgcgaggtactcactcgttctttaaggttatttggtttgtttgtgtctgggtaatttggaaggaacgtaataatcacattttcaaa |
33154755 |
T |
|
| Q |
357 |
aatatgatggttactcctttggtccttgttgagaaagtaaagctactctcttttttgtggttgaaagctaaacagacatgcttttgttattgctatcatg |
456 |
Q |
| |
|
|||||| || ||| ||||||| |||| |||| ||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
33154756 |
aatatggtgtctacccctttgggccttcttgaaaaagttaagttactctcttttttgtggttgaaagctaaacagacatccttttgttattgttatcatg |
33154855 |
T |
|
| Q |
457 |
attggtggagacatccgctaccttgtatgggtgtccattaatttttgtctgttttgctg |
515 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
33154856 |
attggtggagacatccactttcttgtatgggtgtccactgatttttgtctgttttgctg |
33154914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 13448644 - 13448572
Alignment:
| Q |
20 |
tgttcgtgtggcatctcttgcgtaaccggctacctacaaaagacaatctaatgcagcggaatattattcatgc |
92 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| | ||||| ||||| ||| |||||||||||||||||| |
|
|
| T |
13448644 |
tgttcgtgtggcgtctcttgcgtaaccggctaccttctaaagataatcttttgcggcggaatattattcatgc |
13448572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 126; Significance: 2e-64; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 26 - 510
Target Start/End: Complemental strand, 37095609 - 37095124
Alignment:
| Q |
26 |
tgtggcatctcttgcgtaaccggctacctacaaaagacaatctaatgcagcggaatattattcatgcaactgatttggcttgcgtcaatgggtgtggagt |
125 |
Q |
| |
|
|||||| ||||||||| |||||||| || ||||||| ||| || || ||| ||||| ||||| |||| || |||||||| || | |||||||||| |
|
|
| T |
37095609 |
tgtggcgtctcttgcgcaaccggcttccatcaaaagataatttattgaggcgaaatatcattcaagcaaacgacttggcttgtgtaaccgggtgtggagc |
37095510 |
T |
|
| Q |
126 |
cgccgaaacagcaacggatctatttattgattgtgatttggcttcctccttgtggaatcttgtctgaaattggttagggatcacggtggttgctccgtgt |
225 |
Q |
| |
|
|| ||||||| | | || ||| || ||||||| ||| ||| || |||||| ||||||||| |||||| ||||| || |||||||| |||| ||| |
|
|
| T |
37095509 |
ttccaaaacagctaatcacctctttcttaattgtgagttgtcttattcattgtggcttcttgtctggaattggatagggctctcggtggttcctccttgt |
37095410 |
T |
|
| Q |
226 |
caattacgtgatcattgcattcaggtttctatcatgggagggatgtcgcgtggtact-acttgttctttaaggtcatctggtttgcttgtgtttgggtaa |
324 |
Q |
| |
|
|| | ||||| |||| ||| ||||| || |||||| |||||| ||||||||||| ||| || ||||||||| || |||||||||||||| || |||| |
|
|
| T |
37095409 |
cagattcgtgagcatttcatccaggtgtccttcatggcggggatgccgcgtggtactcactcgtactttaaggttatatggtttgcttgtgtctgagtaa |
37095310 |
T |
|
| Q |
325 |
tttggaaggaacataataatcgcattttcaaaaatatgatggttactcctttggtccttgttgagaaagtaaagctactctcttttttgtggttgaaagc |
424 |
Q |
| |
|
||||||||| | |||||||||| ||||| |||||| || || |||| | ||||||||| |||||| ||| ||| |||| |||||||||| ||||||||| |
|
|
| T |
37095309 |
tttggaaggcatataataatcgtatttttaaaaatttggtgtctactaccttggtcctttttgagagagtcaagttactttcttttttgtcgttgaaagc |
37095210 |
T |
|
| Q |
425 |
taaacagacatgcttttgttattgctatcatgattggtggagacatccgctaccttgtatgggtgtccattaatttttgtctgttt |
510 |
Q |
| |
|
|||||| |||| ||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||| | ||| ||||||||| |
|
|
| T |
37095209 |
taaacatacatccttttattattgttatcatgattggtggagacatccgctatcttgtatgggtgtccactgattgatgtctgttt |
37095124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 402 - 487
Target Start/End: Original strand, 49907551 - 49907636
Alignment:
| Q |
402 |
ctctcttttttgtggttgaaagctaaacagacatgcttttgttattgctatcatgattggtggagacatccgctaccttgtatggg |
487 |
Q |
| |
|
||||||||| ||||||||||||| ||||| |||| |||| ||| || ||||||||||||||||||||| |||||| || |||||| |
|
|
| T |
49907551 |
ctctcttttctgtggttgaaagcaaaacatacatcctttaattactgttatcatgattggtggagacattcgctactttatatggg |
49907636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 502
Target Start/End: Complemental strand, 36012208 - 36011716
Alignment:
| Q |
11 |
aagtgtctctgttcgtgtggcatctcttgcgtaaccggctacctacaaaagacaatctaatgcagcggaatattattcatgcaactgatttggcttgcgt |
110 |
Q |
| |
|
|||||||| |||||||||||| |||||| ||||| || || || || ||||||||||| | | ||| | ||||||||||| | |||||| ||| || |
|
|
| T |
36012208 |
aagtgtctgtgttcgtgtggcgtctcttacgtaatcgactgccaaccaaagacaatctttttcggcgtcagattattcatgctaacgatttgttttgtgt |
36012109 |
T |
|
| Q |
111 |
caatgggtgtggagtcgccgaaacagcaacggatctatttattgattgtgatttggcttcctccttgtggaatcttgtctgaaattggttagggatcacg |
210 |
Q |
| |
|
| ||||||||||| |||||||| ||| | || ||||||| ||||||||||||| | ||||| ||||||||| |||||| ||||| | || |
|
|
| T |
36012108 |
aactgggtgtggagattttgaaacagctacgcacctttttattgtatgtgatttggcttatacactgtggtttcttgtctggaattggatagggttgtcg |
36012009 |
T |
|
| Q |
211 |
gtggttgctccgtgtcaattacgtgatcattgcattcaggtttctatcatgggagggatgtcgcgtggtactactt-gttctttaaggtcatctggtttg |
309 |
Q |
| |
|
| || |||| ||||| | || ||||||| |||||||||||| ||||| ||||||| | | | |||| || |||||| ||||| || ||||||| |
|
|
| T |
36012008 |
atagtccctccctgtcagcttcgcgatcatttcattcaggtttcctacatggcagggatgctgagagttactcattcgttcttcaaggttatatggtttg |
36011909 |
T |
|
| Q |
310 |
cttgtgtttgggtaatttggaaggaacataataatcgcattttcaaaaatatgatggttactcctttggtccttgttgagaaagtaaagctactctcttt |
409 |
Q |
| |
|
||||||| |||||||| ||||||||| || ||||| |||||| || | | | || | | | ||||| ||| | |||||||| |||||| | ||||| |
|
|
| T |
36011908 |
cttgtgtctgggtaatctggaaggaaagaaacaatcgtattttccaagagacggtgtcttcatcattggttcttttagagaaagtcaagctattatcttt |
36011809 |
T |
|
| Q |
410 |
tttgtggttgaaagctaaacagacatgcttttgttattgctatcatgattggtggagacatccgctaccttgtatgggtgtccattaattttt |
502 |
Q |
| |
|
| ||||| | |||||||| || | | ||| |||||| |||||||||||||||||| | ||||| |||||||||||||||| || |||||| |
|
|
| T |
36011808 |
tctgtggcttaaagctaatcaagcttcttttcattattgttatcatgattggtggagatacccgctgccttgtatgggtgtccgttgattttt |
36011716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 235 - 342
Target Start/End: Complemental strand, 14791874 - 14791766
Alignment:
| Q |
235 |
gatcattgcattcaggtttctatcatgggagggatgtcgcgtggtact-acttgttctttaaggtcatctggtttgcttgtgtttgggtaatttggaagg |
333 |
Q |
| |
|
||||||| |||||| ||||| |||||| |||||| | |||||||| ||| ||||||||||| || ||||||||||| |||||||| |||||||||| |
|
|
| T |
14791874 |
gatcattatattcagctttctttcatggcggggatgccatgtggtactcactcattctttaaggttatatggtttgcttgcgtttgggtgatttggaagg |
14791775 |
T |
|
| Q |
334 |
aacataata |
342 |
Q |
| |
|
||| ||||| |
|
|
| T |
14791774 |
aacgtaata |
14791766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 528 - 575
Target Start/End: Complemental strand, 37095103 - 37095056
Alignment:
| Q |
528 |
tctctgtgtctgtaaactctgatcggtggtgttttgtgcactccttgt |
575 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||| | |||||||||||| |
|
|
| T |
37095103 |
tctcggtgtctgtaaactttgatcggtggtgttctttgcactccttgt |
37095056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 5e-37; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 186 - 499
Target Start/End: Original strand, 8771198 - 8771510
Alignment:
| Q |
186 |
tgtctgaaattggttagggatcacggtggttgctccgtgtcaattacgtgatcattgcattcaggtttctatcatgggagggatgtcgcgtggtac-tac |
284 |
Q |
| |
|
||||||||||||| ||||| || |||||||| |||| ||||| | || ||||||| ||||||| ||||| |||||| |||||| |||||||||| || |
|
|
| T |
8771198 |
tgtctgaaattgggtagggctctcggtggttcctccttgtcagcttcgagatcatttcattcagttttctttcatggcggggatgccgcgtggtacacac |
8771297 |
T |
|
| Q |
285 |
ttgttctttaaggtcatctggtttgcttgtgtttgggtaatttggaaggaacataataatcgcattttcaaaaatatgatggttactcctttggtccttg |
384 |
Q |
| |
|
| ||||||||||| || |||||||| || |||||| ||||||||||||||| ||||| || || |||||||||| | | |||||| ||| | ||| |
|
|
| T |
8771298 |
tcattctttaaggttatttggtttgcgtgcgtttggataatttggaaggaacgtaatagccgtatcttcaaaaatacggcgtctactccattgattctta |
8771397 |
T |
|
| Q |
385 |
ttgagaaagtaaagctactctcttttttgtggttgaaagctaaacagacatgcttttgttattgctatcatgattggtggagacatccgctaccttgtat |
484 |
Q |
| |
|
||||||| || ||| ||||||||||||||||| | ||||| |||||| | | |||| ||| || |||||||||||||||| |||| |||| |||||| |
|
|
| T |
8771398 |
ttgagaatgtcaagttactctcttttttgtggctcaaagcaaaacaggcgtcctttaattactgttatcatgattggtggaaacatgtgcta--ttgtat |
8771495 |
T |
|
| Q |
485 |
gggtgtccattaatt |
499 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
8771496 |
gggtgtccactaatt |
8771510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 295 - 490
Target Start/End: Original strand, 14235905 - 14236100
Alignment:
| Q |
295 |
aggtcatctggtttgcttgtgtttgggtaatttggaaggaacataataatcgcattttcaaaaatatgatggttactcctttggtccttgttgagaaagt |
394 |
Q |
| |
|
|||| |||||||||||| | ||||| || |||||||| |||| |||||||| || ||||| |||| ||| || || |||| | || |||||||||| |
|
|
| T |
14235905 |
aggttatctggtttgctagcgtttgagttatttggaatgaacggaataatcgaatcttcaataatacaatgactagtctgttggcctttattgagaaagt |
14236004 |
T |
|
| Q |
395 |
aaagctactctcttttttgtggttgaaagctaaacagacatgcttttgttattgctatcatgattggtggagacatccgctaccttgtatgggtgt |
490 |
Q |
| |
|
||| || ||||||||||||||||||| |||||||||| | || |||||| ||||||| ||||||| ||| |||||||||||||||||||| |
|
|
| T |
14236005 |
caagttatattcttttttgtggttgaaagtaaaacagacatcccttaattattgttatcatggctggtggaaacacccgctaccttgtatgggtgt |
14236100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 408 - 491
Target Start/End: Complemental strand, 11651146 - 11651063
Alignment:
| Q |
408 |
tttttgtggttgaaagctaaacagacatgcttttgttattgctatcatgattggtggagacatccgctaccttgtatgggtgtc |
491 |
Q |
| |
|
||||||||||||||||| |||||| | | |||| ||| || |||||||| ||||||| |||||| |||||||||||||||||| |
|
|
| T |
11651146 |
tttttgtggttgaaagcaaaacaggcgtcctttaattactgttatcatgactggtggaaacatcctctaccttgtatgggtgtc |
11651063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 232 - 491
Target Start/End: Original strand, 18575449 - 18575709
Alignment:
| Q |
232 |
cgtgatcattgcattcaggtttctatcatgggagggatgtcgcgtggtact-acttgttctttaaggtcatctggtttgcttgtgtttgggtaatttgga |
330 |
Q |
| |
|
|||||||||| |||||||||||| |||||| ||||||| || |||||||| | | ||| ||||| || || |||||| |||||| | |||||| |||| |
|
|
| T |
18575449 |
cgtgatcatttcattcaggtttccttcatggcagggatgccgagtggtactcattcgttatttaacgttatatggtttttttgtgtctaggtaatctgga |
18575548 |
T |
|
| Q |
331 |
aggaacataataatcgcattttcaaaaatatgatggttactcctttggtccttgttgagaaagtaaagctactctcttttttgtggttgaaagctaaaca |
430 |
Q |
| |
|
||||| ||||| || ||||||||| | | | || | | | ||||||||| | |||||||| ||| || | ||||| ||||| | ||||||||||| |
|
|
| T |
18575549 |
tggaacgaaataaccgtattttcaaagagacggtgtcttcatccttggtccttttagagaaagtcaagttattatctttcatgtggctaaaagctaaaca |
18575648 |
T |
|
| Q |
431 |
gacatgcttttgttattgctatcatgattggtggagacatccgctaccttgtatgggtgtc |
491 |
Q |
| |
|
| | ||| |||||| ||| |||||||||||||| ||| ||| ||||||||||||||| |
|
|
| T |
18575649 |
agcttcttttcattattgttatgatgattggtggagatatcagctgccttgtatgggtgtc |
18575709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 92
Target Start/End: Original strand, 8771020 - 8771106
Alignment:
| Q |
6 |
tgtgtaagtgtctctgttcgtgtggcatctcttgcgtaaccggctacctacaaaagacaatctaatgcagcggaatattattcatgc |
92 |
Q |
| |
|
|||| |||| ||| |||| |||||| |||||||| |||| || | ||||||||||| |||||| ||| |||||||||| ||||||| |
|
|
| T |
8771020 |
tgtgaaagtttctatgtttgtgtggtgtctcttgcataacagggttcctacaaaagataatctattgcggcggaatattcttcatgc |
8771106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 7e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 363 - 446
Target Start/End: Original strand, 17976636 - 17976719
Alignment:
| Q |
363 |
atggttactcctttggtccttgttgagaaagtaaagctactctcttttttgtggttgaaagctaaacagacatgcttttgttat |
446 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
17976636 |
atggctactcctttagtccttgttgagaaagtaaagctattctcttttttgtggttgaaagctaaagagacatgcttttgttat |
17976719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 387 - 504
Target Start/End: Complemental strand, 4105798 - 4105681
Alignment:
| Q |
387 |
gagaaagtaaagctactctcttttttgtggttgaaagctaaacagacatgcttttgttattgctatcatgattggtggagacatccgctaccttgtatgg |
486 |
Q |
| |
|
|||||||| |||||| | |||||||||||| | |||||||| || | | ||| |||||| |||||||||||||||||| | ||||| |||||||||| |
|
|
| T |
4105798 |
gagaaagtcaagctattatcttttttgtggcttaaagctaatcaagcttcttttcattattgttatcatgattggtggagatacccgctgccttgtatgg |
4105699 |
T |
|
| Q |
487 |
gtgtccattaatttttgt |
504 |
Q |
| |
|
||||||||| || ||||| |
|
|
| T |
4105698 |
gtgtccattgatctttgt |
4105681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 443 - 491
Target Start/End: Complemental strand, 9660376 - 9660328
Alignment:
| Q |
443 |
ttattgctatcatgattggtggagacatccgctaccttgtatgggtgtc |
491 |
Q |
| |
|
|||||| |||||||||||||||||| | ||||| ||||||||||||||| |
|
|
| T |
9660376 |
ttattgttatcatgattggtggagatacccgctgccttgtatgggtgtc |
9660328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 443 - 493
Target Start/End: Complemental strand, 7690151 - 7690101
Alignment:
| Q |
443 |
ttattgctatcatgattggtggagacatccgctaccttgtatgggtgtcca |
493 |
Q |
| |
|
|||| |||||||||||||| ||| ||||||||| ||||| ||||||||||| |
|
|
| T |
7690151 |
ttatagctatcatgattgggggaaacatccgcttccttgcatgggtgtcca |
7690101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 294 - 343
Target Start/End: Original strand, 27309823 - 27309872
Alignment:
| Q |
294 |
aaggtcatctggtttgcttgtgtttgggtaatttggaaggaacataataa |
343 |
Q |
| |
|
||||| || ||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
27309823 |
aaggtaatttggtttgcttgcttttgggtaatatggaaggaacataataa |
27309872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 474 - 621
Target Start/End: Original strand, 9667 - 9821
Alignment:
| Q |
474 |
ctaccttgtatgggtgtccattaatttttgtctgttttgctggtacnnnnnnng--tctctgtgtctgtaaactctgatcggtggtgttttgtgcactc- |
570 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||| ||||||||| | | ||| | ||| |||||| | |||||||||||||| | ||||||| |
|
|
| T |
9667 |
ctaccttgtataggtgtccattaatttgtgtctgatttgctggtgctttttttgactctttatgtttgtaaaatttgatcggtggtgttctttgcactcc |
9766 |
T |
|
| Q |
571 |
----cttgtacatgaagcttcctcattgttgattatatatatatcattttgattt |
621 |
Q |
| |
|
||||| |||| ||||||| | || ||||||||||||||| ||||||||||| |
|
|
| T |
9767 |
ttgacttgtgcatggagcttccccgtttttgattatatatataacattttgattt |
9821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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