View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6854_high_32 (Length: 242)
Name: NF6854_high_32
Description: NF6854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6854_high_32 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 20 - 242
Target Start/End: Complemental strand, 22506997 - 22506775
Alignment:
| Q |
20 |
ctatcttcctgctgcttgcggttgttagccagtttgattcaacaccattttcctttccgactgagcataaatcacgtcatcaaattgagtccatcctgct |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22506997 |
ctatcttcctgctgcttgcggttgttagccagtttgattcaacaccattttcctttccgactgagcataaatcacgtcatcaaattgagtccatcctgct |
22506898 |
T |
|
| Q |
120 |
gtcattttcacgttcgaaattaagtaatttatctgaacttgattagtttcgacctaattacattatcatctgatagacacctccacactaacttaaaaga |
219 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22506897 |
gtcattttcacgttcgaaattaagcaatttatctgaacttgattagtttcgacctaattacattatcatctgatagacacctccacactaacttaaaaga |
22506798 |
T |
|
| Q |
220 |
gataaatttctccaagaccacct |
242 |
Q |
| |
|
|||||||||||| |||||||||| |
|
|
| T |
22506797 |
gataaatttctcgaagaccacct |
22506775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 186
Target Start/End: Original strand, 10537457 - 10537491
Alignment:
| Q |
152 |
ctgaacttgattagtttcgacctaattacattatc |
186 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |
|
|
| T |
10537457 |
ctgaacttgattagtttcgaccaaattacattatc |
10537491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University