View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6854_high_38 (Length: 220)
Name: NF6854_high_38
Description: NF6854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6854_high_38 |
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| [»] chr2 (7 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 2327221 - 2327002
Alignment:
| Q |
1 |
gatcctcccaaacacgaggatccaaccccatctctgccaccatgaaattcaccgtcccatttttaggcaccaaataaccattcaaaaccacatcatcgct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2327221 |
gatcctcccaaacacgaggatccaaccccatctctgccaccatgaaattcaccgtcccatttttaggcaccaaataaccattcaaaaccacatcatcgct |
2327122 |
T |
|
| Q |
101 |
cattgcatgaggcaacacaaaatgccctggtggatgacgccttaacccttccaaaaccacacacttcaaataccgaagtttatgcaagtcttcctctttc |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2327121 |
cactgcatgaggcaacacaaaatgccctggtggatgacgcctcaacccttccaaaaccacacacttcaaataccgaagtttatgcaagtcttcctctttc |
2327022 |
T |
|
| Q |
201 |
acttcctccttctttacaac |
220 |
Q |
| |
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||||||||||||| |||||| |
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| T |
2327021 |
acttcctccttctctacaac |
2327002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 2330936 - 2330724
Alignment:
| Q |
1 |
gatcctcccaaacacgaggatccaaccccatctctgccaccatgaaattcaccgtcccatttttaggcaccaaataaccattcaaaaccacatcatcgct |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
2330936 |
gatcctcccaaacacgagggtccaaccccatctctgcaaccataaaattcaccgtcccatctttaggcaccaaataaccattcaaaaccacatcctcgct |
2330837 |
T |
|
| Q |
101 |
cattgcatgaggcaacacaaaatgccctggtggatgacgccttaacccttccaaaaccacacacttcaaataccgaagtttatgcaagtcttcctctttc |
200 |
Q |
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|| ||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2330836 |
cactgcgtgaggcaacacgaaatgccctggtggatgacgcctcaacccttccaaaaccacgcacttcaaataccgaagtttatgcaagtcttcctctttc |
2330737 |
T |
|
| Q |
201 |
acttcctccttct |
213 |
Q |
| |
|
||||||||||||| |
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| T |
2330736 |
acttcctccttct |
2330724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 2303666 - 2303454
Alignment:
| Q |
1 |
gatcctcccaaacacgaggatccaaccccatctctgccaccatgaaattcaccgtcccatttttaggcaccaaataaccattcaaaaccacatcatcgct |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| || | |
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| T |
2303666 |
gatcctcccaaacacgaggatcccaccccatctccgccagcatgaaattcaccgtcccatttttaggcaccaaataaccgttcaaaaccacatcctcttt |
2303567 |
T |
|
| Q |
101 |
cattgcatgaggcaacacaaaatgccctggtggatgacgccttaacccttccaaaaccacacacttcaaataccgaagtttatgcaagtcttcctctttc |
200 |
Q |
| |
|
|| || || ||||||| ||||||||| |||||||||||||| |||||||||||||| ||||| ||||||||||||||||| ||||| |||||||||||| |
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| T |
2303566 |
caccgcgtgtggcaacagaaaatgccccggtggatgacgcctcaacccttccaaaacaacacatttcaaataccgaagtttctgcaattcttcctctttc |
2303467 |
T |
|
| Q |
201 |
acttcctccttct |
213 |
Q |
| |
|
||||||||||||| |
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| T |
2303466 |
acttcctccttct |
2303454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 3 - 213
Target Start/End: Complemental strand, 2294051 - 2293841
Alignment:
| Q |
3 |
tcctcccaaacacgaggatccaaccccatctctgccaccatgaaattcaccgtcccatttttaggcaccaaataaccattcaaaaccacatcatcgctca |
102 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||| || ||||||||||||||| |||||||||||||||||||| | |||||||||||| || ||| |
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| T |
2294051 |
tcctcccaaacacgaggatccaacgccatctccgccagcaagaaattcaccgtcccgtttttaggcaccaaataaccgtccaaaaccacatcctctttca |
2293952 |
T |
|
| Q |
103 |
ttgcatgaggcaacacaaaatgccctggtggatgacgccttaacccttccaaaaccacacacttcaaataccgaagtttatgcaagtcttcctctttcac |
202 |
Q |
| |
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|| || |||||| ||| | ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2293951 |
ccgcgtgtggcaacggaaatttccccggtggatgacgcctcaacccttccaaaaccacacacttcaaataccgaagtttctgcaagtcttcctctttcac |
2293852 |
T |
|
| Q |
203 |
ttcctccttct |
213 |
Q |
| |
|
||||||||||| |
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|
| T |
2293851 |
ttcctccttct |
2293841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 2321368 - 2321155
Alignment:
| Q |
1 |
gatcctcccaaacacgaggatccaaccccatctctgccaccatgaaattcaccgtcccatttttaggcaccaaataaccattcaaaaccacatcatcgct |
100 |
Q |
| |
|
||||||||||||||||||||||| || ||||||| | || ||||||||||||||||||||||||||||||||||||||| |||||||||||||| || | |
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| T |
2321368 |
gatcctcccaaacacgaggatcccacgccatctccgacagcatgaaattcaccgtcccatttttaggcaccaaataaccgttcaaaaccacatcctcttt |
2321269 |
T |
|
| Q |
101 |
cattgcatgaggcaacacaaaatgccc-tggtggatgacgccttaacccttccaaaaccacacacttcaaataccgaagtttatgcaagtcttcctcttt |
199 |
Q |
| |
|
|| | || | ||||||||||||||| ||||||||||||||| | ||||||||||||||| ||||||||||| |||||||| ||||||| ||||||||| |
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|
| T |
2321268 |
caccgtgtgtgccaacacaaaatgcccctggtggatgacgcctcatcccttccaaaaccacgcacttcaaatatcgaagtttctgcaagttttcctcttt |
2321169 |
T |
|
| Q |
200 |
cacttcctccttct |
213 |
Q |
| |
|
|||||||||||||| |
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| T |
2321168 |
cacttcctccttct |
2321155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 2351242 - 2351030
Alignment:
| Q |
1 |
gatcctcccaaacacgaggatccaaccccatctctgccaccatgaaattcaccgtcccatttttaggcaccaaataaccattcaaaaccacatcatcgct |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| || |||| |||||| || | |
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|
| T |
2351242 |
gatcctcccaaacacgaggatcccaccccatctctgccaccataaaattgaccgtcccatttttaggcaccaaataaccgttaaaaagcacatcctctgt |
2351143 |
T |
|
| Q |
101 |
cattgcatgaggcaacacaaaatgccctggtggatgacgccttaacccttccaaaaccacacacttcaaataccgaagtttatgcaagtcttcctctttc |
200 |
Q |
| |
|
|| || || ||||||||| |||||| |||||||||||||| |||||||||||||||||||| |||| |||| |||||| ||||| |||||||||||| |
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|
| T |
2351142 |
caccgcgtgtggcaacacattatgccccggtggatgacgcctcaacccttccaaaaccacacatttcagatacaaaagtttctgcaaatcttcctctttc |
2351043 |
T |
|
| Q |
201 |
acttcctccttct |
213 |
Q |
| |
|
|||||| |||||| |
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|
| T |
2351042 |
acttccaccttct |
2351030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 3 - 213
Target Start/End: Complemental strand, 2310382 - 2310172
Alignment:
| Q |
3 |
tcctcccaaacacgaggatccaaccccatctctgccaccatgaaattcaccgtcccatttttaggcaccaaataaccattcaaaaccacatcatcgctca |
102 |
Q |
| |
|
||||||||||||||| |||||||| ||||||| |||| | ||||||||||||||| |||||||||||||||||||| | |||||||||||| || ||| |
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|
| T |
2310382 |
tcctcccaaacacgacgatccaacgccatctccgccagaaagaaattcaccgtcccgtttttaggcaccaaataaccgtccaaaaccacatcctctttca |
2310283 |
T |
|
| Q |
103 |
ttgcatgaggcaacacaaaatgccctggtggatgacgccttaacccttccaaaaccacacacttcaaataccgaagtttatgcaagtcttcctctttcac |
202 |
Q |
| |
|
|| || |||||| ||| | ||| | |||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
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|
| T |
2310282 |
ccgcgtgtggcaacggaaatttccccgatggatgacgcctcaacccttccaaaaccacacacttcaaataccaaagtttctgcaagtcttcctctttcac |
2310183 |
T |
|
| Q |
203 |
ttcctccttct |
213 |
Q |
| |
|
||||||||||| |
|
|
| T |
2310182 |
ttcctccttct |
2310172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 9e-23; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 41127248 - 41127050
Alignment:
| Q |
1 |
gatcctcccaaacacgaggatccaaccccatctctgccaccatgaaattcaccgtcccatttttaggcaccaaataaccattcaaaaccacatcatcgct |
100 |
Q |
| |
|
|||| |||||||||| ||| ||| ||| || |||||||||||||||||||| | |||||||||||| ||| ||||| | ||||||||||| || | |
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|
| T |
41127248 |
gatcttcccaaacactagggtccctccctatgtctgccaccatgaaattcactaccacatttttaggcagcaagtaaccgtcgaaaaccacatcctcctt |
41127149 |
T |
|
| Q |
101 |
cattgcatgaggcaacacaaaatgccctggtggatgacgccttaacccttccaaaaccacacacttcaaataccgaagtttatgcaagtcttcctcttt |
199 |
Q |
| |
|
|| ||||| ||||||||||| ||||| ||||| |||| ||| | ||||||||||| ||||||||| | ||| | || || ||||||||||||||||| |
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|
| T |
41127148 |
caccgcatggggcaacacaaagtgccccggtgggtgacacctcagcccttccaaaatcacacactttagatatggtaggttctgcaagtcttcctcttt |
41127050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 26506857 - 26506749
Alignment:
| Q |
1 |
gatcctcccaaacacgaggatccaaccccatctctgccaccatgaaattcaccgtcccatttttaggcaccaaataaccattcaaaaccacatcatcgct |
100 |
Q |
| |
|
||||||||||||||| |||||| |||| | |||||||||||| ||||| || |||||||||||||||||||| ||||| || |||| |||||| ||| | |
|
|
| T |
26506857 |
gatcctcccaaacacttggatcccacccaacctctgccaccataaaattaactgtcccatttttaggcaccaagtaaccgttaaaaatcacatcctcggt |
26506758 |
T |
|
| Q |
101 |
cattgcatg |
109 |
Q |
| |
|
|| |||||| |
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|
| T |
26506757 |
cactgcatg |
26506749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 26494780 - 26494725
Alignment:
| Q |
33 |
tctgccaccatgaaattcaccgtcccatttttaggcaccaaataaccattcaaaac |
88 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
26494780 |
tctgccaccataaaattcacagtcccatttttaggcaccaagtaaccattcaaaac |
26494725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 26494681 - 26494607
Alignment:
| Q |
132 |
ggatgacgccttaacccttccaaaaccacacacttcaaataccgaagtttatgcaagtcttcctctttcacttcc |
206 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||| | | ||| | ||| ||||||||| |||||||| |
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| T |
26494681 |
ggatgacgccttaacccttccaaaatcacagccttcaaatatggcaatttctccaaatcttcctctctcacttcc |
26494607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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