View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6854_high_4 (Length: 754)

Name: NF6854_high_4
Description: NF6854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6854_high_4
NF6854_high_4
[»] chr7 (1 HSPs)
chr7 (9-741)||(35841349-35842081)


Alignment Details
Target: chr7 (Bit Score: 713; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 713; E-Value: 0
Query Start/End: Original strand, 9 - 741
Target Start/End: Complemental strand, 35842081 - 35841349
Alignment:
Q  9 acatcacctacagaagaacttccataacaggacttgccattatcaagatctccacctctctgactgtctttacaatcggtagcaattgttgggtgcagaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35842081 acatcacctacagaagaacttccataacaggacttgccattatcaagatctccacctctctgactgtctttacaatcggtagcaattgttgggtgcagaa 35841982  T
Q  109 catttgattcttctgaaggctttagatcttcatcatctgctgttgtttcctgatagggagacaaatccatcggagaaaagccaccagaagattcaggggt 208  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35841981 catttgattcttctgaagcctttagatcttcatcatctgctgttgtttcctgatagggagacaaatccatcggagaaaagccaccagaagattcaggggt 35841882  T
Q  209 ttcaagtgaactgttttcttttggcaaatgatctagccttgtctgtttcttattcaatgaatgtgacttcaattttcgtctcatatattttgatcctttt 308  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35841881 ttcaagcgaactgttttcttttggcaaatgatctagccttgtctgtttcttattcaatgaatgtgacttcaattttcgtctcatatattttgatcctttt 35841782  T
Q  309 tctttggaagatttactcttatgtgtgggttcaaattttttattcaacttacaaaataagttgtctttaaaataagaaggatcccatgccggaggcttaa 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35841781 tctttggaagatttactcttatgtgtgggttcaaattttttattcaacttacaaaataagttgtctttaaaataagaaggatcccatgccggaggcttaa 35841682  T
Q  409 agcccgtacaagactcttcaactccattcacttgagcatcttcagacacgtgaaaatctctgatcccatcttgactggtggttgtcttagaacaaggtat 508  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  35841681 agcccgtacaagactcttcaactccattcacttgagcatcttcagacacgtgaaaatctctgatcccatcctgactggtggttgtcttagaacaaggtat 35841582  T
Q  509 ttctgtagcatcctgatcaataccttgagcagttccattttggacaccatgtgttccggaagctttgtcgctgtcagaatcatcattggtatacaactgt 608  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  35841581 tcctgtagcatcctgatcaataccttgagcagttccattttggacaccatgtgttccggaagctttgtcactgtcagaatcatcattggtatacaactgt 35841482  T
Q  609 tcaccgccagtattagttcccgaactaacactagaaaccttgtgacttcctccaaacacaaaaacgttgctactacttacatgtgaactcgtagaatctc 708  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35841481 tcaccgccagtattagttcccgaactaacactagaaaccttgtgacttcctccaaacacaaaaacgttgctactacttacatgtgaactcgtagaatctc 35841382  T
Q  709 tagcaatacgaacaccctcgtgatcattgatgt 741  Q
    |||||||||||||||||||||||||||||||||    
T  35841381 tagcaatacgaacaccctcgtgatcattgatgt 35841349  T

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