View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6854_high_7 (Length: 604)

Name: NF6854_high_7
Description: NF6854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6854_high_7
NF6854_high_7
[»] chr5 (9 HSPs)
chr5 (20-179)||(22631012-22631171)
chr5 (437-482)||(21789549-21789594)
chr5 (432-482)||(3371334-3371384)
chr5 (432-482)||(7121320-7121370)
chr5 (432-482)||(7122513-7122564)
chr5 (432-474)||(294374-294416)
chr5 (430-482)||(7006353-7006404)
chr5 (434-482)||(7216625-7216673)
chr5 (434-482)||(30668923-30668970)
[»] chr8 (15 HSPs)
chr8 (20-146)||(23121426-23121552)
chr8 (432-482)||(26170402-26170452)
chr8 (432-482)||(43323790-43323840)
chr8 (437-482)||(44058258-44058303)
chr8 (433-481)||(33284378-33284425)
chr8 (432-482)||(9555844-9555894)
chr8 (436-480)||(1178380-1178424)
chr8 (431-482)||(3777126-3777176)
chr8 (435-482)||(14530307-14530354)
chr8 (432-482)||(20164624-20164675)
chr8 (432-482)||(38982110-38982161)
chr8 (432-482)||(39013207-39013258)
chr8 (432-482)||(37483393-37483443)
chr8 (433-482)||(43325063-43325112)
chr8 (433-481)||(14529631-14529679)
[»] chr1 (21 HSPs)
chr1 (288-420)||(161754-161886)
chr1 (431-482)||(22058697-22058748)
chr1 (432-482)||(38174065-38174115)
chr1 (432-482)||(48643346-48643396)
chr1 (435-482)||(39910648-39910694)
chr1 (436-482)||(38132676-38132722)
chr1 (432-482)||(49762585-49762635)
chr1 (432-482)||(50961356-50961406)
chr1 (433-481)||(45151342-45151389)
chr1 (432-482)||(6668313-6668364)
chr1 (432-482)||(16829854-16829905)
chr1 (432-482)||(21796115-21796166)
chr1 (432-482)||(46624604-46624655)
chr1 (436-482)||(161687-161733)
chr1 (432-482)||(10374134-10374184)
chr1 (432-482)||(22059797-22059847)
chr1 (432-481)||(48642062-48642110)
chr1 (436-480)||(9775863-9775906)
chr1 (442-482)||(36630983-36631023)
chr1 (435-482)||(36632268-36632313)
chr1 (432-476)||(50962682-50962726)
[»] scaffold0230 (1 HSPs)
scaffold0230 (432-482)||(18764-18814)
[»] chr6 (13 HSPs)
chr6 (432-482)||(18325541-18325591)
chr6 (432-482)||(2405054-2405104)
chr6 (433-482)||(18867257-18867306)
chr6 (434-482)||(19635865-19635913)
chr6 (432-482)||(19634502-19634553)
chr6 (432-482)||(20400141-20400192)
chr6 (432-482)||(2403674-2403725)
chr6 (432-479)||(17183323-17183370)
chr6 (434-481)||(29057497-29057543)
chr6 (432-482)||(17139767-17139816)
chr6 (436-482)||(17141210-17141256)
chr6 (109-181)||(27366313-27366383)
chr6 (109-181)||(27456660-27456730)
[»] chr4 (16 HSPs)
chr4 (432-482)||(10670329-10670379)
chr4 (432-482)||(10883968-10884018)
chr4 (432-482)||(40314216-40314266)
chr4 (432-482)||(40324292-40324342)
chr4 (436-482)||(21075157-21075203)
chr4 (430-479)||(33268196-33268246)
chr4 (432-482)||(46079141-46079191)
chr4 (432-482)||(48183191-48183241)
chr4 (432-482)||(53552300-53552352)
chr4 (432-482)||(30606025-30606076)
chr4 (432-482)||(34422052-34422103)
chr4 (432-482)||(48508289-48508340)
chr4 (432-478)||(23020157-23020203)
chr4 (433-482)||(21464112-21464161)
chr4 (388-420)||(11597360-11597392)
chr4 (438-482)||(42250138-42250182)
[»] chr3 (16 HSPs)
chr3 (432-481)||(23495748-23495797)
chr3 (434-482)||(23494350-23494398)
chr3 (435-482)||(5117789-5117836)
chr3 (432-482)||(26167230-26167280)
chr3 (444-482)||(49116362-49116400)
chr3 (438-482)||(50563945-50563989)
chr3 (432-482)||(28039986-28040036)
chr3 (432-482)||(49116841-49116891)
chr3 (437-482)||(28038786-28038830)
chr3 (434-482)||(50564860-50564909)
chr3 (432-482)||(5118807-5118858)
chr3 (431-482)||(39274615-39274666)
chr3 (432-482)||(5117364-5117414)
chr3 (435-473)||(49116400-49116438)
chr3 (438-482)||(7104546-7104589)
chr3 (434-482)||(26165877-26165925)
[»] chr7 (19 HSPs)
chr7 (430-482)||(32042973-32043025)
chr7 (432-482)||(11651340-11651390)
chr7 (432-482)||(15993777-15993827)
chr7 (432-482)||(32040953-32041003)
chr7 (432-482)||(48989279-48989329)
chr7 (434-482)||(37747432-37747480)
chr7 (431-482)||(28240667-28240718)
chr7 (437-482)||(7468064-7468109)
chr7 (430-482)||(39174264-39174316)
chr7 (432-482)||(15992329-15992380)
chr7 (432-482)||(34461148-34461199)
chr7 (432-482)||(44377462-44377513)
chr7 (432-482)||(44386329-44386380)
chr7 (432-482)||(21520444-21520494)
chr7 (444-482)||(44523543-44523581)
chr7 (437-481)||(34459195-34459240)
chr7 (434-482)||(21521539-21521587)
chr7 (430-482)||(24845638-24845690)
chr7 (432-480)||(35357455-35357503)
[»] scaffold0087 (1 HSPs)
scaffold0087 (431-481)||(42090-42140)
[»] scaffold0012 (1 HSPs)
scaffold0012 (432-482)||(53372-53422)
[»] scaffold0013 (2 HSPs)
scaffold0013 (432-482)||(100915-100966)
scaffold0013 (432-482)||(99613-99663)
[»] scaffold0862 (1 HSPs)
scaffold0862 (432-482)||(684-734)
[»] chr2 (6 HSPs)
chr2 (433-482)||(42744116-42744165)
chr2 (432-482)||(5202729-5202780)
chr2 (444-482)||(9894562-9894600)
chr2 (444-482)||(15249559-15249597)
chr2 (433-482)||(22285998-22286047)
chr2 (432-481)||(25979588-25979636)


Alignment Details
Target: chr5 (Bit Score: 140; Significance: 5e-73; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 20 - 179
Target Start/End: Original strand, 22631012 - 22631171
Alignment:
Q  20 cttacatcaaaagattaaaattacaaatctaggcatgatgattgttggattttgtgaaaaattgaggttatagattacacatttgcatcatccaggaaat 119  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  22631012 cttacatcaaaagattaacattacaaatctaggcatgatgattgttggattttgtgtaaaattgaggttatagaatacacatttgcatcatccaggaaat 22631111  T
Q  120 tgagagagtgaaagaagaatagcacatttgcttaacttctaagttaatgtcagagtgtaa 179  Q
    || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  22631112 tgggagagtgaaagaggaatagcacatttgcttaacttctaagttaatgtcagagtgtaa 22631171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 437 - 482
Target Start/End: Complemental strand, 21789594 - 21789549
Alignment:
Q  437 aaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||    
T  21789594 aaaccggaactcgcctaaattacagggggtaaagacatattaaccc 21789549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 432 - 482
Target Start/End: Original strand, 3371334 - 3371384
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    |||| |||||| |||||||| |||||||||| |||||||||||||||||||    
T  3371334 ggggaaaaccggaactcgcccaaattacagggggtaaagacatattaaccc 3371384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 432 - 482
Target Start/End: Complemental strand, 7121370 - 7121320
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    |||| |||||| |||||||| |||||||||| |||||||||||||||||||    
T  7121370 ggggaaaaccggaactcgcccaaattacagggggtaaagacatattaaccc 7121320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 482
Target Start/End: Original strand, 7122513 - 7122564
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattacagg-aggtaaagacatattaaccc 482  Q
    |||| |||||| |||||||| |||||||||| ||||||||||||||||||||    
T  7122513 ggggaaaaccggaactcgcccaaattacagggaggtaaagacatattaaccc 7122564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 432 - 474
Target Start/End: Original strand, 294374 - 294416
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattacaggaggtaaagacat 474  Q
    |||||||||||||||||||  |||||||||| |||||||||||    
T  294374 ggggtaaaccgaaactcgcacaaattacagggggtaaagacat 294416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 430 - 482
Target Start/End: Original strand, 7006353 - 7006404
Alignment:
Q  430 caggggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    |||||||||| |  |||||||| |||||||||| |||||||||||||||||||    
T  7006353 caggggtaaatcagaactcgcccaaattacagg-ggtaaagacatattaaccc 7006404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 434 - 482
Target Start/End: Original strand, 7216625 - 7216673
Alignment:
Q  434 ggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    ||||||||| |||||||| |||||||| ||  |||||||||||||||||    
T  7216625 ggtaaaccggaactcgcccaaattacaagaaataaagacatattaaccc 7216673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 434 - 482
Target Start/End: Original strand, 30668923 - 30668970
Alignment:
Q  434 ggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    ||||||||| ||||||||||||||||||| | |||| ||||||||||||    
T  30668923 ggtaaaccggaactcgcctaaattacagg-gataaatacatattaaccc 30668970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 1e-48; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 23121552 - 23121426
Alignment:
Q  20 cttacatcaaaagattaaaattacaaatctaggcatgatgattgttggattttgtgaaaaattgaggttatagattacacatttgcatcatccaggaaat 119  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||    
T  23121552 cttacgtcaaaagattaacattacaaatctaggcatgatgattgttggattttgtgtaaaattgaggttatagaatacacatttgcatcatcgaggaaat 23121453  T
Q  120 tgagagagtgaaagaagaatagcacat 146  Q
    || |||||||||||| |||||||||||    
T  23121452 tgggagagtgaaagaggaatagcacat 23121426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 432 - 482
Target Start/End: Original strand, 26170402 - 26170452
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    |||| |||||| ||||||||||||||||||| |||||||||||||||||||    
T  26170402 ggggaaaaccggaactcgcctaaattacagggggtaaagacatattaaccc 26170452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 432 - 482
Target Start/End: Complemental strand, 43323840 - 43323790
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    ||||||||||| ||||||||||||||||||| |||||| ||||||||||||    
T  43323840 ggggtaaaccggaactcgcctaaattacagggggtaaatacatattaaccc 43323790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 437 - 482
Target Start/End: Original strand, 44058258 - 44058303
Alignment:
Q  437 aaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||    
T  44058258 aaaccggaactcgcccaaattacaggaggtaaagacatattaaccc 44058303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 433 - 481
Target Start/End: Complemental strand, 33284425 - 33284378
Alignment:
Q  433 gggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaacc 481  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  33284425 gggtaaaccgaaactcgcccaaattacagg-ggtaaagacatattaacc 33284378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 432 - 482
Target Start/End: Complemental strand, 9555894 - 9555844
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    |||| |||||| |||||||| |||||||||| |||||||||||||||||||    
T  9555894 ggggaaaaccggaactcgcccaaattacagggggtaaagacatattaaccc 9555844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 436 - 480
Target Start/End: Original strand, 1178380 - 1178424
Alignment:
Q  436 taaaccgaaactcgcctaaattacaggaggtaaagacatattaac 480  Q
    |||||||||||||||| |||||||||| ||||||||||| |||||    
T  1178380 taaaccgaaactcgcccaaattacagggggtaaagacatgttaac 1178424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 431 - 482
Target Start/End: Complemental strand, 3777176 - 3777126
Alignment:
Q  431 aggggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    |||||||||||| |||||| |||||||||||| |||||| ||||||||||||    
T  3777176 aggggtaaaccggaactcgtctaaattacagg-ggtaaatacatattaaccc 3777126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 482
Target Start/End: Original strand, 14530307 - 14530354
Alignment:
Q  435 gtaaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    ||||||||||||||||| |||||||||  |||||||| ||||||||||    
T  14530307 gtaaaccgaaactcgcccaaattacagacggtaaagatatattaaccc 14530354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 482
Target Start/End: Complemental strand, 20164675 - 20164624
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattaca-ggaggtaaagacatattaaccc 482  Q
    ||||||||||| |||||||| |||||||| || |||||||||||||||||||    
T  20164675 ggggtaaaccggaactcgcccaaattacaggggggtaaagacatattaaccc 20164624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 482
Target Start/End: Complemental strand, 38982161 - 38982110
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattaca-ggaggtaaagacatattaaccc 482  Q
    |||| ||||||||||||||| |||||||| || |||||||||||||||||||    
T  38982161 ggggaaaaccgaaactcgcccaaattacaggggggtaaagacatattaaccc 38982110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 482
Target Start/End: Complemental strand, 39013258 - 39013207
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattaca-ggaggtaaagacatattaaccc 482  Q
    |||| ||||||||||||||| |||||||| || |||||||||||||||||||    
T  39013258 ggggaaaaccgaaactcgcccaaattacaggggggtaaagacatattaaccc 39013207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 432 - 482
Target Start/End: Original strand, 37483393 - 37483443
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    ||||||||||  |||||| | |||||||||| |||||||||||||||||||    
T  37483393 ggggtaaaccagaactcgtccaaattacagggggtaaagacatattaaccc 37483443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 43325063 - 43325112
Alignment:
Q  433 gggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    |||||||||| ||||| |  |||||||||| |||||||||||||||||||    
T  43325063 gggtaaaccggaactcactcaaattacagggggtaaagacatattaaccc 43325112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 433 - 481
Target Start/End: Complemental strand, 14529679 - 14529631
Alignment:
Q  433 gggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaacc 481  Q
    ||||||| || |||||||| |||||||| | ||||||||||||||||||    
T  14529679 gggtaaatcggaactcgcccaaattacatggggtaaagacatattaacc 14529631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 288 - 420
Target Start/End: Complemental strand, 161886 - 161754
Alignment:
Q  288 gccatgtcagcataccacatcatcaattatacacaatcagatccaagtcagcgtgtcatgtcatccattttgcttagtcagctgctaggtggtctaaaat 387  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||| |||||||| |  ||||||||||    
T  161886 gccatgtcagcataccacatcatcaattatacacaatcagattcaagtcagcgtgccatgtcattcattttgcttagccagctgcttgagggtctaaaat 161787  T
Q  388 gaaagaatcttcgtattttagggacggaatcta 420  Q
     ||||||||||| ||||| || |||||||||||    
T  161786 aaaagaatcttcatatttcagagacggaatcta 161754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 431 - 482
Target Start/End: Complemental strand, 22058748 - 22058697
Alignment:
Q  431 aggggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  22058748 aggggtaaaccgaaactcgcccaaattacagggggtaaagacatattaaccc 22058697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 432 - 482
Target Start/End: Complemental strand, 38174115 - 38174065
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    ||||||||||| |||||||| || |||||||||||||||||||||||||||    
T  38174115 ggggtaaaccggaactcgcccaagttacaggaggtaaagacatattaaccc 38174065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 432 - 482
Target Start/End: Original strand, 48643346 - 48643396
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    ||||||||||| ||||||||||||||||||| |||||| ||||||||||||    
T  48643346 ggggtaaaccggaactcgcctaaattacagggggtaaatacatattaaccc 48643396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 435 - 482
Target Start/End: Complemental strand, 39910694 - 39910648
Alignment:
Q  435 gtaaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||||    
T  39910694 gtaaaccgaaactcgcctaaattacagg-ggtaaagacacattaaccc 39910648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 482
Target Start/End: Original strand, 38132676 - 38132722
Alignment:
Q  436 taaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    ||||||| |||||||| |||||||||| |||||||||||||||||||    
T  38132676 taaaccggaactcgcccaaattacagggggtaaagacatattaaccc 38132722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 432 - 482
Target Start/End: Complemental strand, 49762635 - 49762585
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    |||| |||||| |||||||| |||||||||| |||||||||||||||||||    
T  49762635 ggggaaaaccggaactcgcccaaattacagggggtaaagacatattaaccc 49762585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 432 - 482
Target Start/End: Complemental strand, 50961406 - 50961356
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    ||||||||||| ||||| ||||||||||||| |||||| ||||||||||||    
T  50961406 ggggtaaaccggaactcccctaaattacagggggtaaatacatattaaccc 50961356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 433 - 481
Target Start/End: Original strand, 45151342 - 45151389
Alignment:
Q  433 gggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaacc 481  Q
    |||||||  ||||||||||||||||||| ||||||||||||||||||||    
T  45151342 gggtaaattgaaactcgcctaaattaca-gaggtaaagacatattaacc 45151389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 482
Target Start/End: Original strand, 6668313 - 6668364
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattacaggagg-taaagacatattaaccc 482  Q
    ||||||||||| |||||||| |||||||||| || |||||||||||||||||    
T  6668313 ggggtaaaccggaactcgcccaaattacaggtggctaaagacatattaaccc 6668364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 482
Target Start/End: Complemental strand, 16829905 - 16829854
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattacagg-aggtaaagacatattaaccc 482  Q
    |||| |||||| |||||||| |||||||||| ||||||||||||||||||||    
T  16829905 ggggaaaaccggaactcgcccaaattacagggaggtaaagacatattaaccc 16829854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 482
Target Start/End: Complemental strand, 21796166 - 21796115
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattacagga-ggtaaagacatattaaccc 482  Q
    ||||||||||| || ||||| ||||||||||| |||||||||||||||||||    
T  21796166 ggggtaaaccggaattcgcccaaattacaggagggtaaagacatattaaccc 21796115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 482
Target Start/End: Complemental strand, 46624655 - 46624604
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattaca-ggaggtaaagacatattaaccc 482  Q
    |||| ||||||||||||||| |||||||| || |||||||||||||||||||    
T  46624655 ggggaaaaccgaaactcgcccaaattacaggggggtaaagacatattaaccc 46624604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 436 - 482
Target Start/End: Complemental strand, 161733 - 161687
Alignment:
Q  436 taaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    |||||||||||||| |||||||||| | | |||||||||||||||||    
T  161733 taaaccgaaactcgtctaaattacaagggataaagacatattaaccc 161687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 432 - 482
Target Start/End: Complemental strand, 10374184 - 10374134
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    ||||||||||  |||||||| |||||||||| | |||||||||||||||||    
T  10374184 ggggtaaaccagaactcgcccaaattacaggggttaaagacatattaaccc 10374134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 432 - 482
Target Start/End: Original strand, 22059797 - 22059847
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    |||||||| || ||||| || |||||||||| |||||||||||||||||||    
T  22059797 ggggtaaatcggaactcacccaaattacagggggtaaagacatattaaccc 22059847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 481
Target Start/End: Complemental strand, 48642110 - 48642062
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaacc 481  Q
    ||||||||||||||||||   |||||||||| ||||||||||||||||||    
T  48642110 ggggtaaaccgaaactcgatcaaattacagg-ggtaaagacatattaacc 48642062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 436 - 480
Target Start/End: Original strand, 9775863 - 9775906
Alignment:
Q  436 taaaccgaaactcgcctaaattacaggaggtaaagacatattaac 480  Q
    ||||||| ||||||||||||||||||| |||||||| ||||||||    
T  9775863 taaaccggaactcgcctaaattacagg-ggtaaagatatattaac 9775906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 442 - 482
Target Start/End: Complemental strand, 36631023 - 36630983
Alignment:
Q  442 gaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    |||||||| |||||||||||| |||||| ||||||||||||    
T  36631023 gaaactcggctaaattacagggggtaaatacatattaaccc 36630983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 435 - 482
Target Start/End: Original strand, 36632268 - 36632313
Alignment:
Q  435 gtaaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    |||||||| |||||||| ||||||||||  ||||||||||||||||||    
T  36632268 gtaaaccggaactcgcccaaattacagg--gtaaagacatattaaccc 36632313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 432 - 476
Target Start/End: Original strand, 50962682 - 50962726
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattacaggaggtaaagacatat 476  Q
    ||||||||||| | |||||| |||||||||| |||||||||||||    
T  50962682 ggggtaaaccggatctcgcccaaattacagggggtaaagacatat 50962726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 432 - 482
Target Start/End: Original strand, 18764 - 18814
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  18764 ggggtaaaccgaaactcgcccaaattacagggggtaaagacatattaaccc 18814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 432 - 482
Target Start/End: Complemental strand, 18325591 - 18325541
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  18325591 ggggtaaaccgaaactcgcccaaattacagggggtaaagacatattaaccc 18325541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 432 - 482
Target Start/End: Original strand, 2405054 - 2405104
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    ||||||||||| ||||||||||||||||||  |||||||||||||||||||    
T  2405054 ggggtaaaccggaactcgcctaaattacagagggtaaagacatattaaccc 2405104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 18867257 - 18867306
Alignment:
Q  433 gggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    ||||||||||||||||| |||||||||||| |||||||| ||||||||||    
T  18867257 gggtaaaccgaaactcgtctaaattacagggggtaaagatatattaaccc 18867306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 434 - 482
Target Start/End: Original strand, 19635865 - 19635913
Alignment:
Q  434 ggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    ||||||||||||||||||||||||||||  |||||| ||||||||||||    
T  19635865 ggtaaaccgaaactcgcctaaattacagagggtaaatacatattaaccc 19635913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 432 - 482
Target Start/End: Complemental strand, 19634553 - 19634502
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattaca-ggaggtaaagacatattaaccc 482  Q
    ||||||||||||||||||||||||||||| || |||||| ||||||||||||    
T  19634553 ggggtaaaccgaaactcgcctaaattacaggggggtaaaaacatattaaccc 19634502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 432 - 482
Target Start/End: Complemental strand, 20400192 - 20400141
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattac-aggaggtaaagacatattaaccc 482  Q
    |||||||||||||||||||| ||||||| ||| |||||||||||||||||||    
T  20400192 ggggtaaaccgaaactcgcccaaattacaagggggtaaagacatattaaccc 20400141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 482
Target Start/End: Complemental strand, 2403725 - 2403674
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattaca-ggaggtaaagacatattaaccc 482  Q
    ||||||||||| ||||||||||||||||| || |||||| ||||||||||||    
T  2403725 ggggtaaaccggaactcgcctaaattacaggggggtaaatacatattaaccc 2403674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 479
Target Start/End: Complemental strand, 17183370 - 17183323
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaa 479  Q
    |||||||| || ||||||||||||||||||| |||||| |||||||||    
T  17183370 ggggtaaatcggaactcgcctaaattacagggggtaaatacatattaa 17183323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 434 - 481
Target Start/End: Original strand, 29057497 - 29057543
Alignment:
Q  434 ggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaacc 481  Q
    |||||||||||||||||| |||||||||| | ||||||||||||||||    
T  29057497 ggtaaaccgaaactcgcccaaattacagg-gataaagacatattaacc 29057543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 432 - 482
Target Start/End: Complemental strand, 17139816 - 17139767
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    ||||||||||| |||||||| |||||||||| ||||||||||| |||||||    
T  17139816 ggggtaaaccggaactcgcccaaattacagg-ggtaaagacatgttaaccc 17139767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 436 - 482
Target Start/End: Original strand, 17141210 - 17141256
Alignment:
Q  436 taaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    ||||||| |||||| |||||||||||| |||| ||||||||||||||    
T  17141210 taaaccggaactcgactaaattacagggggtatagacatattaaccc 17141256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 181
Target Start/End: Original strand, 27366313 - 27366383
Alignment:
Q  109 atccaggaaattgagagagtgaaagaagaatagcacatttgcttaacttctaagttaatgtcagagtgtaaca 181  Q
    ||||||||||||| |||||||||||| |||||   |||  |||||||||| ||||||||||||  ||||||||    
T  27366313 atccaggaaattgggagagtgaaagaggaata--tcataagcttaacttcgaagttaatgtcaaggtgtaaca 27366383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 181
Target Start/End: Original strand, 27456660 - 27456730
Alignment:
Q  109 atccaggaaattgagagagtgaaagaagaatagcacatttgcttaacttctaagttaatgtcagagtgtaaca 181  Q
    ||||||||||||| |||||||||||| |||||   |||  |||||||||| ||||||||||||  ||||||||    
T  27456660 atccaggaaattgggagagtgaaagaggaata--tcataagcttaacttcgaagttaatgtcaaggtgtaaca 27456730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 432 - 482
Target Start/End: Complemental strand, 10670379 - 10670329
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  10670379 ggggtaaaccggaactcgcccaaattacaggaggtaaagacatattaaccc 10670329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 432 - 482
Target Start/End: Complemental strand, 10884018 - 10883968
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  10884018 ggggtaaaccggaactcgcccaaattacaggaggtaaagacatattaaccc 10883968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 432 - 482
Target Start/End: Complemental strand, 40314266 - 40314216
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    |||| |||||| |||||||| ||||||||||||||||||||||||||||||    
T  40314266 ggggaaaaccggaactcgcccaaattacaggaggtaaagacatattaaccc 40314216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 432 - 482
Target Start/End: Complemental strand, 40324342 - 40324292
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    |||| |||||| |||||||| ||||||||||||||||||||||||||||||    
T  40324342 ggggaaaaccggaactcgcccaaattacaggaggtaaagacatattaaccc 40324292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 482
Target Start/End: Complemental strand, 21075203 - 21075157
Alignment:
Q  436 taaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    ||||||| ||||||||||||||||||| |||||| ||||||||||||    
T  21075203 taaaccggaactcgcctaaattacagggggtaaatacatattaaccc 21075157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 430 - 479
Target Start/End: Complemental strand, 33268246 - 33268196
Alignment:
Q  430 caggggtaaaccgaaactcgcctaaattacagga-ggtaaagacatattaa 479  Q
    ||||||||||||||||||||||||||||| |||| |||||| |||||||||    
T  33268246 caggggtaaaccgaaactcgcctaaattataggagggtaaatacatattaa 33268196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 432 - 482
Target Start/End: Complemental strand, 46079191 - 46079141
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    ||||||||||| |||||||| |||||||||| |||||| ||||||||||||    
T  46079191 ggggtaaaccggaactcgcccaaattacagggggtaaaaacatattaaccc 46079141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 432 - 482
Target Start/End: Original strand, 48183191 - 48183241
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    |||| |||||| |||||||| |||||||||| |||||||||||||||||||    
T  48183191 ggggaaaaccggaactcgcccaaattacagggggtaaagacatattaaccc 48183241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 432 - 482
Target Start/End: Original strand, 53552300 - 53552352
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattacagg--aggtaaagacatattaaccc 482  Q
    ||||||||||| |||||||| ||||||||||  ||||||||||||||||||||    
T  53552300 ggggtaaaccggaactcgcccaaattacagggaaggtaaagacatattaaccc 53552352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 482
Target Start/End: Complemental strand, 30606076 - 30606025
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattaca-ggaggtaaagacatattaaccc 482  Q
    |||| ||||||||||||||| |||||||| || |||||||||||||||||||    
T  30606076 ggggaaaaccgaaactcgcccaaattacaggggggtaaagacatattaaccc 30606025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 482
Target Start/End: Complemental strand, 34422103 - 34422052
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattaca-ggaggtaaagacatattaaccc 482  Q
    |||| ||||||||||||||| |||||||| || |||||||||||||||||||    
T  34422103 ggggaaaaccgaaactcgcccaaattacaggggggtaaagacatattaaccc 34422052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 482
Target Start/End: Complemental strand, 48508340 - 48508289
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattacagga-ggtaaagacatattaaccc 482  Q
    ||||||||||| |||||||| |||||| |||| |||||||||||||||||||    
T  48508340 ggggtaaaccggaactcgccaaaattataggagggtaaagacatattaaccc 48508289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 432 - 478
Target Start/End: Original strand, 23020157 - 23020203
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattacaggaggtaaagacatatta 478  Q
    |||| |||||| |||||||| |||||||||| |||||||||||||||    
T  23020157 ggggaaaaccggaactcgcccaaattacagggggtaaagacatatta 23020203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 21464112 - 21464161
Alignment:
Q  433 gggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    |||||||| |||||||||| |||||| ||| | |||||||||||||||||    
T  21464112 gggtaaactgaaactcgcccaaattaaaggggataaagacatattaaccc 21464161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 388 - 420
Target Start/End: Original strand, 11597360 - 11597392
Alignment:
Q  388 gaaagaatcttcgtattttagggacggaatcta 420  Q
    |||||||||||| ||||||||||||||||||||    
T  11597360 gaaagaatcttcatattttagggacggaatcta 11597392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 438 - 482
Target Start/End: Complemental strand, 42250182 - 42250138
Alignment:
Q  438 aaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    ||||| |||||||| |||||||||| |||||| ||||||||||||    
T  42250182 aaccggaactcgcccaaattacagggggtaaatacatattaaccc 42250138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 432 - 481
Target Start/End: Original strand, 23495748 - 23495797
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaacc 481  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  23495748 ggggtaaaccgaaactcgcctaaattacagggggtaaatacatattaacc 23495797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 434 - 482
Target Start/End: Complemental strand, 23494398 - 23494350
Alignment:
Q  434 ggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||||    
T  23494398 ggtaaaccgaaactcgcccaaattacagggggtaaagacatattaaccc 23494350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 435 - 482
Target Start/End: Complemental strand, 5117836 - 5117789
Alignment:
Q  435 gtaaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||    
T  5117836 gtaaaccggaactcgcctaaattacagggggtaaagacatattaaccc 5117789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 432 - 482
Target Start/End: Original strand, 26167230 - 26167280
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    ||||||||||| || |||||||||||||||| |||||||||||||||||||    
T  26167230 ggggtaaaccggaattcgcctaaattacagggggtaaagacatattaaccc 26167280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 444 - 482
Target Start/End: Complemental strand, 49116400 - 49116362
Alignment:
Q  444 aactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    |||||||||||||||||||||||||||||||||||||||    
T  49116400 aactcgcctaaattacaggaggtaaagacatattaaccc 49116362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 438 - 482
Target Start/End: Complemental strand, 50563989 - 50563945
Alignment:
Q  438 aaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||    
T  50563989 aaccggaactcgcctaaattacaggtggtaaagacatattaaccc 50563945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 432 - 482
Target Start/End: Original strand, 28039986 - 28040036
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    |||| |||||| |||||||| |||||||||| |||||||||||||||||||    
T  28039986 ggggaaaaccggaactcgcccaaattacagggggtaaagacatattaaccc 28040036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 432 - 482
Target Start/End: Original strand, 49116841 - 49116891
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    ||||||||||| |||||||  |||||||||| |||||||||||||||||||    
T  49116841 ggggtaaaccggaactcgctcaaattacagggggtaaagacatattaaccc 49116891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 437 - 482
Target Start/End: Complemental strand, 28038830 - 28038786
Alignment:
Q  437 aaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||    
T  28038830 aaaccgaaactcgcccaaattacagg-ggtaaagacatattaaccc 28038786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 434 - 482
Target Start/End: Original strand, 50564860 - 50564909
Alignment:
Q  434 ggtaaaccgaaactcgcctaaattac-aggaggtaaagacatattaaccc 482  Q
    ||||||||||||||||||||||| || ||| |||||||||||||||||||    
T  50564860 ggtaaaccgaaactcgcctaaatgacaagggggtaaagacatattaaccc 50564909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 482
Target Start/End: Original strand, 5118807 - 5118858
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattacagga-ggtaaagacatattaaccc 482  Q
    ||||||||||| ||||| |||||||||||||| |||||| ||||||||||||    
T  5118807 ggggtaaaccggaactcacctaaattacaggagggtaaaaacatattaaccc 5118858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 431 - 482
Target Start/End: Original strand, 39274615 - 39274666
Alignment:
Q  431 aggggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    |||||||||||| |||||||| ||||||||||   |||||||||||||||||    
T  39274615 aggggtaaaccggaactcgcccaaattacagggactaaagacatattaaccc 39274666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 432 - 482
Target Start/End: Complemental strand, 5117414 - 5117364
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    ||||||||| | ||||| || |||||||||| |||||||||||||||||||    
T  5117414 ggggtaaactggaactcacccaaattacagggggtaaagacatattaaccc 5117364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 435 - 473
Target Start/End: Complemental strand, 49116438 - 49116400
Alignment:
Q  435 gtaaaccgaaactcgcctaaattacaggaggtaaagaca 473  Q
    |||||||| ||||||||||||||||||| ||||||||||    
T  49116438 gtaaaccggaactcgcctaaattacagggggtaaagaca 49116400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 438 - 482
Target Start/End: Complemental strand, 7104589 - 7104546
Alignment:
Q  438 aaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    ||||| |||||||| |||||||||| |||||||||||||||||||    
T  7104589 aaccggaactcgcccaaattacagg-ggtaaagacatattaaccc 7104546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 434 - 482
Target Start/End: Complemental strand, 26165925 - 26165877
Alignment:
Q  434 ggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    |||||| || |||||||| |||||| ||| |||||||||||||||||||    
T  26165925 ggtaaatcggaactcgcccaaattatagggggtaaagacatattaaccc 26165877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 430 - 482
Target Start/End: Original strand, 32042973 - 32043025
Alignment:
Q  430 caggggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    |||||||||||||||||||| | |||||||||| |||||||||||||||||||    
T  32042973 caggggtaaaccgaaactcgtccaaattacagggggtaaagacatattaaccc 32043025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 432 - 482
Target Start/End: Complemental strand, 11651390 - 11651340
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    ||||||||||| |||||||| |||||||||| |||||||||||||||||||    
T  11651390 ggggtaaaccggaactcgcccaaattacagggggtaaagacatattaaccc 11651340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 432 - 482
Target Start/End: Original strand, 15993777 - 15993827
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    ||||||||||| ||||||||||||||||||| |||||| ||||||||||||    
T  15993777 ggggtaaaccggaactcgcctaaattacagggggtaaatacatattaaccc 15993827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 432 - 482
Target Start/End: Complemental strand, 32041003 - 32040953
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    ||||||||||| ||||||||||||||||||| |||||| ||||||||||||    
T  32041003 ggggtaaaccggaactcgcctaaattacagggggtaaatacatattaaccc 32040953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 432 - 482
Target Start/End: Complemental strand, 48989329 - 48989279
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    |||||||||||||| ||||| |||||||||| |||||||||||||||||||    
T  48989329 ggggtaaaccgaaagtcgcccaaattacagggggtaaagacatattaaccc 48989279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 434 - 482
Target Start/End: Original strand, 37747432 - 37747480
Alignment:
Q  434 ggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    ||||||||| ||||||||||||||||||| |||||| ||||||||||||    
T  37747432 ggtaaaccggaactcgcctaaattacagggggtaaatacatattaaccc 37747480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 431 - 482
Target Start/End: Complemental strand, 28240718 - 28240667
Alignment:
Q  431 aggggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    ||||| |||||| |||||||| |||||||||| |||||||||||||||||||    
T  28240718 aggggaaaaccggaactcgcccaaattacagggggtaaagacatattaaccc 28240667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 437 - 482
Target Start/End: Complemental strand, 7468109 - 7468064
Alignment:
Q  437 aaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    |||||| |||||||| |||||||||| |||||||||||||||||||    
T  7468109 aaaccggaactcgcccaaattacagggggtaaagacatattaaccc 7468064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 430 - 482
Target Start/End: Complemental strand, 39174316 - 39174264
Alignment:
Q  430 caggggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    ||||||||||||  |||||||| |||||||||  |||||||||||||||||||    
T  39174316 caggggtaaaccagaactcgcccaaattacagtgggtaaagacatattaaccc 39174264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 482
Target Start/End: Complemental strand, 15992380 - 15992329
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattaca-ggaggtaaagacatattaaccc 482  Q
    ||||||||||| |||||||| |||||||| || |||||||||||||||||||    
T  15992380 ggggtaaaccggaactcgcccaaattacaggggggtaaagacatattaaccc 15992329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 482
Target Start/End: Original strand, 34461148 - 34461199
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattacagg-aggtaaagacatattaaccc 482  Q
    |||| |||||| |||||||| |||||||||| ||||||||||||||||||||    
T  34461148 ggggaaaaccggaactcgcccaaattacaggaaggtaaagacatattaaccc 34461199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 482
Target Start/End: Complemental strand, 44377513 - 44377462
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattaca-ggaggtaaagacatattaaccc 482  Q
    ||||||||||| |||||||| |||||||| || |||||||||||||||||||    
T  44377513 ggggtaaaccggaactcgcccaaattacaggggggtaaagacatattaaccc 44377462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 482
Target Start/End: Complemental strand, 44386380 - 44386329
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattaca-ggaggtaaagacatattaaccc 482  Q
    ||||||||||| |||||||| |||||||| || |||||||||||||||||||    
T  44386380 ggggtaaaccggaactcgcccaaattacaggggggtaaagacatattaaccc 44386329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 432 - 482
Target Start/End: Complemental strand, 21520494 - 21520444
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    ||||||| ||| ||||||||||||||||||| ||||||  |||||||||||    
T  21520494 ggggtaagccggaactcgcctaaattacagggggtaaaatcatattaaccc 21520444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 444 - 482
Target Start/End: Original strand, 44523543 - 44523581
Alignment:
Q  444 aactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    |||||||| |||||||||| |||||||||||||||||||    
T  44523543 aactcgcccaaattacagggggtaaagacatattaaccc 44523581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 481
Target Start/End: Complemental strand, 34459240 - 34459195
Alignment:
Q  437 aaaccgaaactcgcctaaattaca-ggaggtaaagacatattaacc 481  Q
    ||||||||||||||| |||||||| || ||||||||||||||||||    
T  34459240 aaaccgaaactcgcccaaattacaggggggtaaagacatattaacc 34459195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 434 - 482
Target Start/End: Original strand, 21521539 - 21521587
Alignment:
Q  434 ggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    ||||||| |||||||||| |||||| || ||||||||||||||| ||||    
T  21521539 ggtaaactgaaactcgcccaaattatagaaggtaaagacatattgaccc 21521587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 430 - 482
Target Start/End: Complemental strand, 24845690 - 24845638
Alignment:
Q  430 caggggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    |||||| ||||||||| |  |||| |||||||||||||||||| |||||||||    
T  24845690 caggggaaaaccgaaaatgacctatattacaggaggtaaagacctattaaccc 24845638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 35357503 - 35357455
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaac 480  Q
    ||||||||||| |||||| | |||||| ||| |||||||||||||||||    
T  35357503 ggggtaaaccggaactcgtccaaattatagggggtaaagacatattaac 35357455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 431 - 481
Target Start/End: Complemental strand, 42140 - 42090
Alignment:
Q  431 aggggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaacc 481  Q
    |||||||||||| ||||||||||||||||||| |||||| |||||||||||    
T  42140 aggggtaaaccggaactcgcctaaattacagggggtaaatacatattaacc 42090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 432 - 482
Target Start/End: Complemental strand, 53422 - 53372
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    |||| ||||||||||||||| |||||||||| |||||||||||||||||||    
T  53422 ggggaaaaccgaaactcgcccaaattacagggggtaaagacatattaaccc 53372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 432 - 482
Target Start/End: Original strand, 100915 - 100966
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattaca-ggaggtaaagacatattaaccc 482  Q
    ||||||||||| ||||||||||||||||| || |||||||||||||||||||    
T  100915 ggggtaaaccggaactcgcctaaattacaggggggtaaagacatattaaccc 100966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 432 - 482
Target Start/End: Complemental strand, 99663 - 99613
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    ||||||||| | ||||||||||||||||||| |||||| ||||||||||||    
T  99663 ggggtaaactggaactcgcctaaattacagggggtaaatacatattaaccc 99613  T

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Target: scaffold0862 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0862
Description:

Target: scaffold0862; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 432 - 482
Target Start/End: Complemental strand, 734 - 684
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    ||||||||||| ||||| || |||||||| |||||||||||||||||||||    
T  734 ggggtaaaccggaactcacccaaattacaagaggtaaagacatattaaccc 684  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 42744116 - 42744165
Alignment:
Q  433 gggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    ||||||||||||||||||| |||||||| | ||||||||| |||||||||    
T  42744116 gggtaaaccgaaactcgcccaaattacatggggtaaagacgtattaaccc 42744165  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 482
Target Start/End: Complemental strand, 5202780 - 5202729
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattac-aggaggtaaagacatattaaccc 482  Q
    |||||||||||||||||||| ||||||| ||| |||||| ||||||||||||    
T  5202780 ggggtaaaccgaaactcgcccaaattacaagggggtaaaaacatattaaccc 5202729  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 444 - 482
Target Start/End: Original strand, 9894562 - 9894600
Alignment:
Q  444 aactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    ||||||||||||||| ||| |||||||||||||||||||    
T  9894562 aactcgcctaaattatagggggtaaagacatattaaccc 9894600  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 444 - 482
Target Start/End: Original strand, 15249559 - 15249597
Alignment:
Q  444 aactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    |||||||| |||||||||| |||||||||||||||||||    
T  15249559 aactcgcccaaattacagggggtaaagacatattaaccc 15249597  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 482
Target Start/End: Complemental strand, 22286047 - 22285998
Alignment:
Q  433 gggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaaccc 482  Q
    |||||||||  ||||||||||||||| | ||| |||||||||||||||||    
T  22286047 gggtaaaccagaactcgcctaaattataagagataaagacatattaaccc 22285998  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 481
Target Start/End: Complemental strand, 25979636 - 25979588
Alignment:
Q  432 ggggtaaaccgaaactcgcctaaattacaggaggtaaagacatattaacc 481  Q
    ||||||||||| || ||||| |||||||||| ||||||||||||||||||    
T  25979636 ggggtaaaccggaa-tcgcccaaattacagggggtaaagacatattaacc 25979588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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