View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6854_low_11 (Length: 558)
Name: NF6854_low_11
Description: NF6854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6854_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 14 - 484
Target Start/End: Original strand, 40141848 - 40142317
Alignment:
| Q |
14 |
acatcacgatcacgcaaaccagaagcagaaaacgacaactgcaaattagaagcgattaattatagaaaattgattgaagtagtttgtttttgtagcgaag |
113 |
Q |
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| T |
40141848 |
acatctcgatcacgcaaaccagaagcagaaaacgacaactgcaaattagaagcgattaattatagaaaattgattgatgtagtttgtttt-gtagcgaag |
40141946 |
T |
|
| Q |
114 |
atggagtaagaaagtgagaacctcgatctgagagaagagaccttggtagccacgagacttgaagaagttatcgacggcgtcgttggaagtgtttcccgga |
213 |
Q |
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| T |
40141947 |
atggagtaagaaagtgagaacctcgatctgagagaagagaccttggtagccacgagacttgaagaaattatcgacggcgtcgttggaagtgtttcccgga |
40142046 |
T |
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| Q |
214 |
ttcagaagacctccggcagttccgccgattgccgtgcggccaccggcgacatcggagcagcaatttcccatagcgttgaaatgaattgaaattgaaatga |
313 |
Q |
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| T |
40142047 |
ttcagaagacctccggcagttccgccgattgccgtgcggccaccggcgacatcggagcagcaatttcccatagcgttgaaatgaattgaaattgaaatga |
40142146 |
T |
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| Q |
314 |
aaaagactaaacacgacaacaaaattgaatatcctttgtttatttatctatatgcttcttttacaacttgcaaaatttatttactttattttcttgttat |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40142147 |
aaaagactaaacacgacaacaaaattgaatatcctttgtttatttatctatatgcttcttttacaacttgcaaaatttatttactttattttcttgttat |
40142246 |
T |
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| Q |
414 |
tttgtggatactcgtctttatgcttacaaaattaaaaaggagaagttgaaagaaagagaaaaacaacgcgc |
484 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40142247 |
tttgtggatactcgtctttatgcttacaaaattaaaaaggagaagttgaaagaaagagaaaaacaacgcgc |
40142317 |
T |
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