View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6854_low_12 (Length: 525)

Name: NF6854_low_12
Description: NF6854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6854_low_12
NF6854_low_12
[»] chr8 (13 HSPs)
chr8 (1-523)||(9851114-9851636)
chr8 (1-524)||(2711300-2711820)
chr8 (1-524)||(3142180-3142703)
chr8 (4-402)||(3002021-3002418)
chr8 (1-524)||(2988919-2989436)
chr8 (1-301)||(3170284-3170584)
chr8 (16-488)||(2916160-2916629)
chr8 (1-214)||(2980115-2980328)
chr8 (232-524)||(2911376-2911665)
chr8 (326-522)||(13790867-13791060)
chr8 (340-417)||(3282851-3282928)
chr8 (439-523)||(3001936-3002020)
chr8 (45-128)||(13791255-13791338)
[»] chr7 (1 HSPs)
chr7 (4-524)||(3919169-3919689)
[»] scaffold0065 (2 HSPs)
scaffold0065 (1-523)||(45033-45555)
scaffold0065 (1-523)||(50202-50725)
[»] chr1 (1 HSPs)
chr1 (4-405)||(10755677-10756078)
[»] chr6 (1 HSPs)
chr6 (1-524)||(18355316-18355836)
[»] chr4 (1 HSPs)
chr4 (355-405)||(8572742-8572792)
[»] chr3 (1 HSPs)
chr3 (355-405)||(28698702-28698752)


Alignment Details
Target: chr8 (Bit Score: 487; Significance: 0; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 1 - 523
Target Start/End: Original strand, 9851114 - 9851636
Alignment:
Q  1 cccaaaccaccaaatccaacaacagcaatcaaagagacattttgattttcatgtggttgtctcaagaagcttataatcttcattttatcatcttctcttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9851114 cccaaaccaccaaatccaacaacagcaatcaaagagacattttgattttcatgtggttgtctcaacaagcttataatcttcattttatcatcttctcttc 9851213  T
Q  101 cgatgatatccgattccaacacaaaagaactagtttccctccttacacaattagtttgttgaaccaccacaacgtttgagtttagattcaacccagacat 200  Q
    | |||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9851214 caatgatatccgattccaacacaaaagaactagtctctctccttacacagttagtttgttgaaccaccacaacgtttgagtttagattcaacccagacat 9851313  T
Q  201 atctttcactacatcattgaaacctttttgtattttttcaatctcatatgccattttacggcgaaaagaaattttgtttggagataaggaatgaagtacc 300  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9851314 atcttttactacatcattaaaacctttttgtattttttcaatctcatatgccattttacggcgaaaagaaattttgtttggagataaggaatgaagtacc 9851413  T
Q  301 tttgttactttgttcttatgagtttcatccattttgttcctcatatcttcaataagaaattcatctagcaagtcatctgcaggatgaagcacatctttga 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  9851414 tttgttactttgttcttatgagtttcatccattttgttcctcatatcttcaataacaaattcatctagcaaatcatctgcaggatgaagcacatctttga 9851513  T
Q  401 gccttcttacccaatttcgaacagcatgattttgtgcttcttgtttctcttcagcatcaaggagcacaactctaatagattcaaccgtgttcttaagctt 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9851514 gccttcttacccaatttcgaacagcatgattttgtgcttcttgtttctcttcagcatcaaggagcacaactctaatagattcaaccgtgttcttaagctt 9851613  T
Q  501 ttccaattcattcataacaccat 523  Q
    |||||||||||||||||||||||    
T  9851614 ttccaattcattcataacaccat 9851636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 1 - 524
Target Start/End: Original strand, 2711300 - 2711820
Alignment:
Q  1 cccaaaccaccaaatccaacaacagcaatcaaagagacattttgattttcatgtggttgtctcaagaagcttataatcttcattttatcatcttctcttc 100  Q
    |||||||||||||  ||||||| ||||| ||| |||||||| ||||||||||||| ||| ||||| ||||||||||||||| ||||||||||||||||||    
T  2711300 cccaaaccaccaataccaacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttctttttatcatcttctcttc 2711399  T
Q  101 cgatgatatccgattccaacacaaaagaactagtttccctccttacacaattagtttgttgaaccaccacaacgtttgagtttagattcaacccagacat 200  Q
    | || || || ||||| ||||||||||||||| ||||||||||||||  ||||||||  | |||||||||||| || ||||| ||||||||| |||||||    
T  2711400 caataatctctgattctaacacaaaagaactactttccctccttacatcattagttttcttaaccaccacaacattggagttaagattcaacacagacat 2711499  T
Q  201 atctttcactacatcattgaaacctttttgtattttttcaatctcatatgccattttacggcgaaaagaaattttgtttggagataaggaatgaagtacc 300  Q
    ||||||||| |||||||| | || |||||||||||||||||||||||  ||||||||||||||||||| |  | || ||   ||||||||||||| ||||    
T  2711500 atctttcacaacatcattaacacttttttgtattttttcaatctcatgagccattttacggcgaaaagcagctctgcttatggataaggaatgaaatacc 2711599  T
Q  301 tttgttactttgttcttatgagtttcatccattttgttcctcatatcttcaataagaaattcatctagcaagtcatctgcaggatgaagcacatctttga 400  Q
    |  || |||||||| ||||||| || |||| |||| |   ||||||||||||||||||| ||||||| ||| ||||| |||||| |||||||||||||||    
T  2711600 tgagtcactttgttgttatgagctttatcccttttatgtatcatatcttcaataagaaactcatctatcaaatcatcagcaggaagaagcacatctttga 2711699  T
Q  401 gccttcttacccaatttcgaacagcatgattttgtgcttcttgtttctcttcagcatcaaggagcacaactctaatagattcaaccgtgttcttaagctt 500  Q
    ||||||| ||||| ||| | ||||||||| ||||    |||||||| ||||||||||||||||| ||| || | || |||||||| |||||||| ||  |    
T  2711700 gccttctaacccagttttgtacagcatgactttg---ctcttgtttgtcttcagcatcaaggaggacagctttgatggattcaactgtgttcttgagtat 2711796  T
Q  501 ttccaattcattcataacaccata 524  Q
    ||||||||||| ||||||||||||    
T  2711797 ttccaattcatccataacaccata 2711820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 1 - 524
Target Start/End: Original strand, 3142180 - 3142703
Alignment:
Q  1 cccaaaccaccaaatccaacaacagcaatcaaagagacattttgattttcatgtggttgtctcaagaagcttataatcttcattttatcatcttctcttc 100  Q
    |||||||||||||  ||||||| ||||| || |||||||  |||||||||||||| ||| ||||| | ||||| ||| |   |||||||||| |||||||    
T  3142180 cccaaaccaccaatcccaacaatagcaaccacagagacacgttgattttcatgtgattgcctcaacatgcttacaatgtcatttttatcatcatctcttc 3142279  T
Q  101 cgatgatatccgattccaacacaaaagaactagtttccctccttacacaattagtttgttgaaccaccacaacgtttgagtttagattcaacccagacat 200  Q
    | |||||||| || || ||||||||||||||  |||| ||||| |||| ||||||||| |||||||||||||| || | ||||||||||||| |||||||    
T  3142280 caatgatatctgactctaacacaaaagaacttttttctctcctaacactattagtttgctgaaccaccacaacattcgggtttagattcaacacagacat 3142379  T
Q  201 atctttcactacatcattgaaacct-ttttgtattttttcaatctcatatgccattttacggcgaaaagaaattttgtttggagataaggaatgaagtac 299  Q
    ||||||||| |||||||| |||| | |||||||| ||||||| |||||| ||||||||||||| ||||| |||| | || |||||||| |||||||| ||    
T  3142380 atctttcaccacatcatt-aaacttcttttgtatcttttcaacctcataagccattttacggctaaaagcaattctattcggagataaagaatgaagcac 3142478  T
Q  300 ctttgttactttgttcttatgagtttcatccattttgttcctcatatcttcaataagaaattcatctagcaagtcatctgcaggatgaagca---catct 396  Q
    || |||||||||||||||| ||| |||||||  ||| |  ||||| ||||| |||  ||||||||||||||||||||| ||||||||||| |   |||||    
T  3142479 ctgtgttactttgttcttacgagcttcatcccgtttttgtctcatgtcttcgatagcaaattcatctagcaagtcatcagcaggatgaagtacatcatct 3142578  T
Q  397 ttgagccttcttacccaatttcgaacagcatgattttgtgcttcttgtttctcttcagcatcaaggagcacaactctaatagattcaaccgtgttcttaa 496  Q
    ||||| ||||||| |||  || | ||||||||| |||     |||||||| ||||||||||||||||||||| || | || |||||||| ||||| ||||    
T  3142579 ttgagtcttcttatccagatttgtacagcatgacttt---tctcttgtttgtcttcagcatcaaggagcacagctttgatggattcaactgtgtttttaa 3142675  T
Q  497 gcttttccaattcattcataacaccata 524  Q
    || |||||| ||||| ||| ||||||||    
T  3142676 gcctttccagttcatccatcacaccata 3142703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 4 - 402
Target Start/End: Complemental strand, 3002418 - 3002021
Alignment:
Q  4 aaaccaccaaatccaacaacagcaatcaaagagacattttgattttcatgtggttgtctcaagaagcttataatcttcattttatcatcttctcttccga 103  Q
    ||||||||||  ||||||| ||||||||| ||||||||||| ||| |||||||||||||||| | |  |||||||| | ||||||| ||||||||||| |    
T  3002418 aaaccaccaatcccaacaatagcaatcaaggagacattttggtttccatgtggttgtctcaaaaggtgtataatctcctttttatcgtcttctcttccaa 3002319  T
Q  104 tgatatccgattccaacacaaaagaactagtttccctccttacacaattagtttgttgaaccaccacaacgtttgagtttagattcaacccagacatatc 203  Q
    ||||||||||||| ||||| ||||||||||||||||||| ||||   | | |||||| |||||||||||| |||| |||||||||| |||||||||||||    
T  3002318 tgatatccgattctaacaccaaagaactagtttccctccctacattgtaattttgttcaaccaccacaacatttgggtttagattc-acccagacatatc 3002220  T
Q  204 tttcactacatcattgaaacctttttgtattttttcaatctcatatgccattttacggcgaaaagaaattttgtttggagataaggaatgaagtaccttt 303  Q
    |||||| |||||||| |||| ||||||||||||||||||||||   ||||||||| ||| ||||| |  | || || |||| |||||||||| ||||| |    
T  3002219 tttcacaacatcattaaaacttttttgtattttttcaatctcaagagccattttatggcaaaaagcagctctgcttagagagaaggaatgaaatacctgt 3002120  T
Q  304 gttactttgttcttatgagtttcatccattttgttcctcatatcttcaataagaaattcatctagcaagtcatctgcaggatgaagcacatctttgagc 402  Q
    || ||||||||||||| || || |||| ||||||   ||||||||||||||||||| ||||||| ||| ||| | |||||| ||||||| |||||||||    
T  3002119 gtcactttgttcttatcagctttatcccttttgtgtatcatatcttcaataagaaactcatctatcaaatcaacagcaggaagaagcacgtctttgagc 3002021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 1 - 524
Target Start/End: Complemental strand, 2989436 - 2988919
Alignment:
Q  1 cccaaaccaccaaatccaacaacagcaatcaaagagacattttgattttcatgtggttgtctcaagaagcttataatcttcattttatcatcttctcttc 100  Q
    |||||||||||||  ||||||| ||||| ||| |||||||| |||| |||||||| ||| ||||| |||||||||||| |  ||| ||| ||||||||||    
T  2989436 cccaaaccaccaataccaacaatagcaaccaatgagacattctgatgttcatgtgattgcctcaacaagcttataatcgtgttttgatcttcttctcttc 2989337  T
Q  101 cgatgatatccgattccaacacaaaagaactagtttccctccttacacaattagtttgttgaaccaccacaacgtttgagtttagattcaacccagacat 200  Q
    | ||||| || ||||| |||||| |||| | ||||||||||||||||   |||||||    |||||||||||| ||   ||| || |||||   ||||||    
T  2989336 caatgatctcagattctaacacataagagcaagtttccctccttacattgttagttttcgcaaccaccacaacatt---gttaagtttcaaataagacat 2989240  T
Q  201 atctttcactacatcattgaaacctttttgtattttttcaatctcatatgccattttacggcgaaaagaaattttgtttggagataaggaatgaagtacc 300  Q
    ||||| | | ||||| || |||| | |||||||||||||||||||||  ||||||||||||||||||| | || || ||||  | |||||||||| ||||    
T  2989239 atcttcctcaacatctttaaaacttctttgtattttttcaatctcatgagccattttacggcgaaaagcagttctgcttggtaagaaggaatgaattacc 2989140  T
Q  301 tttgttactttgttcttatgagtttcatccattttgttcctcatatcttcaataagaaattcatctagcaagtcatctgcaggatgaagcacatctttga 400  Q
    | ||| |||||||||||||||| || ||||  |||||   ||||||||||||||||||| ||||||| ||| |||||||||||| ||||||| |||||||    
T  2989139 tgtgtcactttgttcttatgagctttatcccgtttgtgtatcatatcttcaataagaaactcatctatcaaatcatctgcaggaagaagcacgtctttga 2989040  T
Q  401 gccttcttacccaatttcgaacagcatgattttgtgcttcttgtttctcttcagcatcaaggagcacaactctaatagattcaaccgtgttcttaagctt 500  Q
    |||||||||||||   | | |||||| || |||     ||||||||||| |||||||||||||| ||| |||| ||   |||||  ||||| |||||  |    
T  2989039 gccttcttacccagacttgtacagcaggacttt---tctcttgtttctcctcagcatcaaggagtacagctctgatgacttcaattgtgtttttaagtct 2988943  T
Q  501 ttccaattcattcataacaccata 524  Q
    ||| ||||||| ||| ||||||||    
T  2988942 ttctaattcatccatgacaccata 2988919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 3170284 - 3170584
Alignment:
Q  1 cccaaaccaccaaatccaacaacagcaatcaaagagacattttgattttcatgtggttgtctcaagaagcttataatcttcattttatcatcttctcttc 100  Q
    |||||||||||||  ||||||| ||||| ||| |||||||| ||||||||||||| ||| ||||| |||||||| |||||| ||||||||||||||||||    
T  3170284 cccaaaccaccaataccaacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttatgatcttctttttatcatcttctcttc 3170383  T
Q  101 cgatgatatccgattccaacacaaaagaactagtttccctccttacacaattagtttgttgaaccaccacaacgtttgagtttagattcaacccagacat 200  Q
    | ||||| || ||||| |||||||||||||| |||||||||||||||   | | |||| | |||||||||||| |||||||||||||||||||||| |||    
T  3170384 caatgatctctgattctaacacaaaagaacttgtttccctccttacaatgtcactttgctcaaccaccacaacatttgagtttagattcaacccaggcat 3170483  T
Q  201 atctttcactacatcattgaaacctttttgtattttttcaatctcatatgccattttacggcgaaaagaaattttgtttggagataaggaatgaagtacc 300  Q
    ||||||||| || ||||| ||     |||||| ||||||||||||||  ||||||||||||| ||||| |||| | ||||||||||||  ||||||||||    
T  3170484 atctttcaccacgtcattaaatttggtttgtaatttttcaatctcatgagccattttacggctaaaagcaattctatttggagataagcgatgaagtacc 3170583  T
Q  301 t 301  Q
    |    
T  3170584 t 3170584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 16 - 488
Target Start/End: Original strand, 2916160 - 2916629
Alignment:
Q  16 ccaacaacagcaatcaaagagacattttgattttcatgtggttgtctcaagaagcttataatcttcattttatcatcttctcttccgatgatatccgatt 115  Q
    |||||||  |||||||| |||||||| || |||  ||||||||| ||||| ||  ||| |||||   |||||| ||||||||| || |||||||| ||||    
T  2916160 ccaacaatggcaatcaaggagacattgtggtttctatgtggttgcctcaataaatttacaatctcttttttattatcttctctaccaatgatatctgatt 2916259  T
Q  116 ccaacacaaaagaactagtttccctccttacacaattagtttgttgaaccaccacaacgtttgagtttagattcaacccagacatatctttcactacatc 215  Q
    | || |||||||| | |||||| |||||||||   | | |||| |  ||||||||||| |||  | | | |||||||  || ||| || | |||||||||    
T  2916260 ctaatacaaaagagcaagtttctctccttacatcgtcactttgcttcaccaccacaacattttggctcaaattcaacttagtcatttcatccactacatc 2916359  T
Q  216 attgaaacctttttgtattttttcaatctcatatgccattttacggcgaaaagaaattttgtttggagataaggaatgaagtacctttgttactttgttc 315  Q
    ||| ||   ||||  |||||||||||||||    ||||||||||||||||||| |||||| ||||||||||||||||| | ||||||||  |||||||||    
T  2916360 attaaatatttttcttattttttcaatctctcgagccattttacggcgaaaagcaattttttttggagataaggaatgcaatacctttgacactttgttc 2916459  T
Q  316 ttatgagtttcatccattttgttcctcatatcttcaataagaaattcatctagcaagtcatctgcaggatgaagcacatctttgagccttcttacccaat 415  Q
    || | |  | | | |||| |||  | |||  ||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||| ||||| | ||| |    
T  2916460 ttcttacgtgctttcattctgtgtcgcatgccttcaataacaaattcatctagcaagtcatcagcaggatgaagcacatcattgagtcttctaatccagt 2916559  T
Q  416 ttcgaacagcatgattttgtgcttcttgtttctcttcagcatcaaggagcacaactctaatagattcaaccgt 488  Q
    || | |||||||| |||||   |||||||||||| |||||||||||||||||| || | || |||||||||||    
T  2916560 tttgtacagcatggttttg---ttcttgtttctcctcagcatcaaggagcacagctttgatggattcaaccgt 2916629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 2980328 - 2980115
Alignment:
Q  1 cccaaaccaccaaatccaacaacagcaatcaaagagacattttgattttcatgtggttgtctcaagaagcttataatcttcattttatcatcttctcttc 100  Q
    |||||||||||||  ||||||| ||||| || ||| || | |||||||||||||| ||| ||||| ||||||||||||||  ||||||||||||||||||    
T  2980328 cccaaaccaccaataccaacaatagcaaccacagaaacttgttgattttcatgtgattgcctcaacaagcttataatcttgtttttatcatcttctcttc 2980229  T
Q  101 cgatgatatccgattccaacacaaaagaactagtttccctccttacacaattagtttgttgaaccaccacaacgtttgagtttagattcaacccagacat 200  Q
    | |||||||  ||||| |||||| |||||| ||||||||||||||||   |||| ||  | |||||||||||| || ||||| ||||||||| |||||||    
T  2980228 caatgatatttgattctaacacataagaacaagtttccctccttacattgttagctttctcaaccaccacaacattggagttaagattcaacacagacat 2980129  T
Q  201 atctttcactacat 214  Q
    ||||||||| ||||    
T  2980128 atctttcacaacat 2980115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 232 - 524
Target Start/End: Original strand, 2911376 - 2911665
Alignment:
Q  232 attttttcaatctcatatgccattttacggcgaaaagaaattttgtttggagataaggaatgaagtacctttgttactttgttcttatgagtttcatcca 331  Q
    ||||||||||| ||||  ||||| |||  ||| |||| ||||  |||||| |||||||||| || |||||| || ||||| ||||| |||  | |||||     
T  2911376 attttttcaatttcatgagccatcttatagcggaaagcaattcggtttggtgataaggaataaaataccttagtcactttcttcttctgacgtacatccg 2911475  T
Q  332 ttttgttcctcatatcttcaataagaaattcatctagcaagtcatctgcaggatgaagcacatctttgagccttcttacccaatttcgaacagcatgatt 431  Q
     |||||  |||| ||||||||||| |||||||||||||||||  || |||  ||  |||||||||||||| ||||| | ||| |||   |||||||| ||    
T  2911476 atttgtgtctcaaatcttcaataacaaattcatctagcaagttgtcagcaaaattcagcacatctttgagtcttctaatccagttttttacagcatggtt 2911575  T
Q  432 ttgtgcttcttgtttctcttcagcatcaaggagcacaactctaatagattcaaccgtgttcttaagcttttccaattcattcataacaccata 524  Q
    ||||   |||||||| || |||||||||||||| |||  ||| ||||| ||||| || ||||||||| ||||||| |||||||||||||||||    
T  2911576 ttgt---tcttgtttgtcctcagcatcaaggagtacatttctgatagactcaactgtattcttaagcctttccaactcattcataacaccata 2911665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 326 - 522
Target Start/End: Complemental strand, 13791060 - 13790867
Alignment:
Q  326 catccattttgttcctcatatcttcaataagaaattcatctagcaagtcatctgcaggatgaagcacatctttgagccttcttacccaatttcgaacagc 425  Q
    |||||| |||||  |||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||  | ||| |    
T  13791060 catccactttgtatctcataccttcaataataaattcatctagcaagtcatctgcaagatgaagcacatctgtgagccttcttatccaattctgtacaac 13790961  T
Q  426 atgattttgtgcttcttgtttctcttcagcatcaaggagcacaactctaatagattcaaccgtgttcttaagcttttccaattcattcataacacca 522  Q
    |  ||||||   ||| ||||| || |  || ||||||||||||||||| |   ||||||| | |||||||||  ||||||| |||| ||||||||||    
T  13790960 aaaattttg---ttcctgtttatcctgggcgtcaaggagcacaactcttacgcattcaacagagttcttaagtctttccaactcatccataacacca 13790867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 340 - 417
Target Start/End: Original strand, 3282851 - 3282928
Alignment:
Q  340 ctcatatcttcaataagaaattcatctagcaagtcatctgcaggatgaagcacatctttgagccttcttacccaattt 417  Q
    |||||| |||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||    
T  3282851 ctcataccttcaataatgaattcatctagcaagtcatctgcaagatgaagcacatctttgagccttcctatccaattt 3282928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 439 - 523
Target Start/End: Complemental strand, 3002020 - 3001936
Alignment:
Q  439 tcttgtttctcttcagcatcaaggagcacaactctaatagattcaaccgtgttcttaagcttttccaattcattcataacaccat 523  Q
    |||||||| ||||||||||||||||||||| || | || |||||||| |||||||||||| |||||||||||| |||||||||||    
T  3002020 tcttgtttgtcttcagcatcaaggagcacagctttgatggattcaactgtgttcttaagcctttccaattcatccataacaccat 3001936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 128
Target Start/End: Complemental strand, 13791338 - 13791255
Alignment:
Q  45 attttcatgtggttgtctcaagaagcttataatcttcattttatcatcttctcttccgatgatatccgattccaacacaaaaga 128  Q
    |||| ||||||||||| ||||||   ||||||||| | ||||||||||||||||||| ||||| |  ||||| |||| ||||||    
T  13791338 atttccatgtggttgtgtcaagagatttataatctcctttttatcatcttctcttcccatgatgtttgattctaacaaaaaaga 13791255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 4 - 524
Target Start/End: Original strand, 3919169 - 3919689
Alignment:
Q  4 aaaccaccaaatccaacaacagcaatcaaagagacattttgattttcatgtggttgtctcaagaagcttataatcttcattttatcatcttctcttccga 103  Q
    ||||||||||  ||||||| | ||| || | |||||||||||||| ||||||||||  |||| ||||||||||||||| ||||||||||||||||||| |    
T  3919169 aaaccaccaatcccaacaataccaaccacaaagacattttgatttccatgtggttgcatcaacaagcttataatcttctttttatcatcttctcttccaa 3919268  T
Q  104 tgatatccgattccaacacaaaagaactagtttccctccttacacaattagtttgttgaaccaccacaacgtttgagtttagattcaacccagacatatc 203  Q
    ||||||||||||| ||| |||| ||||| ||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  3919269 tgatatccgattctaacgcaaatgaacttgtttccctccttacactcttagtttgttgaaccaccacaacatttgagtttagattcaacccagacatatc 3919368  T
Q  204 tttcactacatcattgaaacctttttgtattttttcaatctcatatgccattttacggcgaaaagaaattttgtttggagataaggaatgaagtaccttt 303  Q
     ||||| |||||||| ||   | |||||| ||||||||||||||  ||||||||||||||||||| || | |||||||||||||||||||||||||||||    
T  3919369 attcaccacatcattaaattttgtttgtagtttttcaatctcatgagccattttacggcgaaaagcaaatctgtttggagataaggaatgaagtaccttt 3919468  T
Q  304 gttactttgttcttatgagtttcatccattttgttcctcatatcttcaataagaaattcatctagcaagtcatctgcaggatgaagca---catctttga 400  Q
    |||||||||||||||| || ||| || |||||||  |||||||| | ||||| ||||||||| ||||||||||| |||||||||||||   |||||||||    
T  3919469 gttactttgttcttatcagcttcctcaattttgtgtctcatatcgtgaataacaaattcatcgagcaagtcatcagcaggatgaagcacatcatctttga 3919568  T
Q  401 gccttcttacccaatttcgaacagcatgattttgtgcttcttgtttctcttcagcatcaaggagcacaactctaatagattcaaccgtgttcttaagctt 500  Q
    ||||||||| ||| ||| | ||| ||||||||||   || ||||||||| || ||||||||||||||| |||| || |||| ||| ||  |||||||| |    
T  3919569 gccttcttatccagttttgcacaccatgattttg---ttgttgtttctcctcggcatcaaggagcacagctctgatggattgaactgtactcttaagcct 3919665  T
Q  501 ttccaattcattcataacaccata 524  Q
    |||||| | || ||||||||||||    
T  3919666 ttccaactgatgcataacaccata 3919689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 523
Target Start/End: Complemental strand, 45555 - 45033
Alignment:
Q  1 cccaaaccaccaaatccaacaacagcaatcaaagagacattttgattttcatgtggttgtctcaagaagcttataatcttcattttatcatcttctcttc 100  Q
    |||||||| ||||  || |||| ||||| ||| |||||||| ||||||||||||| ||| ||||| |||||||| |||||  || |||||||||||||||    
T  45555 cccaaaccgccaatccctacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttatgatcttatttctatcatcttctcttc 45456  T
Q  101 cgatgatatccgattccaacacaaaagaactagtttccctccttacacaattagtttgttgaaccaccacaacgtttgagtttagattcaacccagacat 200  Q
    |||||||||| |||||  ||||||||||||| |||||||||||||||   | | |||| | |||||||||||| ||||||||||||||||||||||||||    
T  45455 cgatgatatctgattctgacacaaaagaacttgtttccctccttacaatgtcactttgctcaaccaccacaacatttgagtttagattcaacccagacat 45356  T
Q  201 atctttcactacatcattgaaacctttttgtattttttcaatctcatatgccattttacggcgaaaagaaattttgtttggagataaggaatgaagtacc 300  Q
    ||||||||| || ||||| ||   | |||||||||||||||||||||  ||||||||||||| ||||| |||| | ||||||||||||  ||||||||||    
T  45355 atctttcaccacgtcattaaattttgtttgtattttttcaatctcatgagccattttacggctaaaagcaattctatttggagataagcgatgaagtacc 45256  T
Q  301 tttgttactttgttcttatgagtttcatccattttgttcctcatatcttcaataagaaattcatctagcaagtcatctgcaggatgaagca---catctt 397  Q
    | ||| |||||||||||  ||| |||||||  |||||  ||||| |||||||||  ||||||||||||||| ||||| |||||||||||||   ||||||    
T  45255 tgtgtcactttgttcttgcgagcttcatcccgtttgtgtctcatgtcttcaatagaaaattcatctagcaaatcatcagcaggatgaagcacatcatctt 45156  T
Q  398 tgagccttcttacccaatttcgaacagcatgattttgtgcttcttgtttctcttcagcatcaaggagcacaactctaatagattcaaccgtgttcttaag 497  Q
    |||| ||||||| ||| ||| | ||| ||||| ||||   || ||||||||| |||||||||||||||||| |||| |  |||||||| || ||||||||    
T  45155 tgagtcttcttatccagttttgcacaccatgactttg---ttgttgtttctcctcagcatcaaggagcacagctctgacggattcaacagtattcttaag 45059  T
Q  498 cttttccaattcattcataacaccat 523  Q
    | ||||||| |||| |||||||||||    
T  45058 cctttccaactcatgcataacaccat 45033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #2
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 1 - 523
Target Start/End: Complemental strand, 50725 - 50202
Alignment:
Q  1 cccaaaccaccaaatccaacaacagcaatcaaagagacattttgattttcatgtggttgtctcaagaagcttataatcttcatttta-tcatcttctctt 99  Q
    |||||||||||||  ||||||| ||||| || ||| ||||  || |||||||||||||  ||||| ||||||| ||||| ||||||| || |||||||||    
T  50725 cccaaaccaccaatcccaacaatagcaaccacagaaacatgctggttttcatgtggttacctcaacaagcttaaaatct-cattttaatcgtcttctctt 50627  T
Q  100 ccgatgatatccgattccaacacaaaagaactagtttccctccttacacaattagtttgttgaaccaccaca--acgtttgagtttagattcaacccaga 197  Q
    ||||||||||| ||||| ||||||||||||||| ||||| || |||||   ||| |||| |  |||||||||  |  |||| ||||||||||||||||||    
T  50626 ccgatgatatcagattcgaacacaaaagaactattttccttctttacaatgttactttgctccaccaccacacaatatttgtgtttagattcaacccaga 50527  T
Q  198 catatctttcactacatcattgaaacctttttgtattttttcaatctcatatgccattttacggcgaaaagaaattttgtttggagataaggaatgaagt 297  Q
    |||||||||||| |||||||| |||  |||||||||||||||||||||||  ||||||||| ||||||||| |||| ||||||||||||| |||||||||    
T  50526 catatctttcaccacatcatt-aaatttttttgtattttttcaatctcatgagccattttaaggcgaaaagcaattctgtttggagataaagaatgaagt 50428  T
Q  298 acctttgttactttgttcttatgagtttcatccattttgttcctcatatcttcaataagaaattcatctagcaagtcatctgcaggatgaagca---cat 394  Q
    |||| | | | ||| |||||| ||| ||||||   |||||  |||| ||||||||||||||||| ||||||||||||||| ||||||||||| |   |||    
T  50427 acctgtctcagttttttcttacgagcttcatctcgtttgtgtctcaaatcttcaataagaaatttatctagcaagtcatcagcaggatgaagtacatcat 50328  T
Q  395 ctttgagccttcttacccaatttcgaacagcatgattttgtgcttcttgtttctcttcagcatcaaggagcacaactctaatagattcaaccgtgttctt 494  Q
    ||||||| ||||||| |||  || | ||||||| | ||||    |||||||||||||||||||| ||||||||| |||  |  |||||||| || |||||    
T  50327 ctttgagtcttcttatccagatttgtacagcattactttg---ctcttgtttctcttcagcatcgaggagcacagctcagacggattcaacagtattctt 50231  T
Q  495 aagcttttccaattcattcataacaccat 523  Q
    |||| ||| ||| |  | |||||||||||    
T  50230 aagccttttcaacttgtgcataacaccat 50202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 182; Significance: 4e-98; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 4 - 405
Target Start/End: Original strand, 10755677 - 10756078
Alignment:
Q  4 aaaccaccaaatccaacaacagcaatcaaagagacattttgattttcatgtggttgtctcaagaagcttataatcttcattttatcatcttctcttccga 103  Q
    ||||||||||  ||||||| ||||| ||| |||||||| ||||||||||||| |||  |||| || |||||||| ||| ||||||||| ||||||||| |    
T  10755677 aaaccaccaataccaacaatagcaaccaaggagacattctgattttcatgtgattgcatcaacaaacttataattttctttttatcatattctcttccaa 10755776  T
Q  104 tgatatccgattccaacacaaaagaactagtttccctccttacacaattagtttgttgaaccaccacaacgtttgagtttagattcaacccagacatatc 203  Q
    ||||||  ||||| ||||||||||||||||||||||||||||||   |||||||  | |||||| ||||| |||||||| ||||||||||||||||||||    
T  10755777 tgatatttgattctaacacaaaagaactagtttccctccttacatcgttagttttctcaaccactacaacatttgagttaagattcaacccagacatatc 10755876  T
Q  204 tttcactacatcattgaaacctttttgtattttttcaatctcatatgccattttacggcgaaaagaaattttgtttggagataaggaatgaagtaccttt 303  Q
    |||||| |||||||| ||||||||||||||||||||||||||    ||||||||||| | ||||  |  |||| ||  ||| || |||||||||||||||    
T  10755877 tttcaccacatcattaaaacctttttgtattttttcaatctctagagccattttacgacaaaaaacagctttgcttaaagagaaagaatgaagtaccttt 10755976  T
Q  304 gttactttgttcttatgagtttcatccattttgttcctcatatcttcaataagaaattcatctagcaagtcatctgcaggatgaagcacatctttgagcc 403  Q
    ||||||||||||||||||| ||||||| |||||    ||||||||||||||||||||||||||| ||| |||||||||| |  |||||||||||||||||    
T  10755977 gttactttgttcttatgagcttcatcccttttgcgtatcatatcttcaataagaaattcatctatcaaatcatctgcagcaacaagcacatctttgagcc 10756076  T
Q  404 tt 405  Q
    ||    
T  10756077 tt 10756078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 174; Significance: 2e-93; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 1 - 524
Target Start/End: Complemental strand, 18355836 - 18355316
Alignment:
Q  1 cccaaaccaccaaatccaacaacagcaatcaaagagacattttgattttcatgtggttgtctcaagaagcttataatcttcattttatcatcttctcttc 100  Q
    |||||||||||||  ||||||| ||||| ||| |||||||| |||| |||||||| ||| ||||| ||||||||||||||  ||||||| ||||||||||    
T  18355836 cccaaaccaccaataccaacaatagcaaccaatgagacattctgatgttcatgtgattgcctcaacaagcttataatcttgtttttatcttcttctcttc 18355737  T
Q  101 cgatgatatccgattccaacacaaaagaactagtttccctccttacacaattagtttgttgaaccaccacaacgtttgagtttagattcaacccagacat 200  Q
    | ||||| || ||||| |||||| |||| | ||||||||||||||||   |||||||    |||||||||||| || ||||| || |||||   ||||||    
T  18355736 caatgatctcagattctaacacataagagcaagtttccctccttacattgttagttttcgcaaccaccacaacattggagttaagtttcaaataagacat 18355637  T
Q  201 atctttcactacatcattgaaacctttttgtattttttcaatctcatatgccattttacggcgaaaagaaattttgtttggagataaggaatgaagtacc 300  Q
    ||||||| | ||||| || |||| | |||||||||||||||||||||  ||||||||||||||||||| | || || |||| || |||||||||| ||||    
T  18355636 atctttctcaacatctttaaaacttctttgtattttttcaatctcatgagccattttacggcgaaaagcagttctgcttggtgagaaggaatgaaatacc 18355537  T
Q  301 tttgttactttgttcttatgagtttcatccattttgttcctcatatcttcaataagaaattcatctagcaagtcatctgcaggatgaagcacatctttga 400  Q
    | | | |||||||||||||||| || |||| ||||||   ||||||||||||||| ||||||||||| ||| |||||||||||| ||||||  || ||||    
T  18355536 tgtttcactttgttcttatgagctttatcccttttgtgtatcatatcttcaataaaaaattcatctatcaaatcatctgcaggaagaagcaggtcgttga 18355437  T
Q  401 gccttcttacccaatttcgaacagcatgattttgtgcttcttgtttctcttcagcatcaaggagcacaactctaatagattcaaccgtgttcttaagctt 500  Q
    ||||||| |||||   | | ||||||||| ||||    |||||||| ||||||||||||||||||||| || | || |||||||| || ||||||||| |    
T  18355436 gccttctaacccagagttgtacagcatgactttg---ctcttgtttgtcttcagcatcaaggagcacagctttgatggattcaactgtcttcttaagcct 18355340  T
Q  501 ttccaattcattcataacaccata 524  Q
    ||||| ||||| ||| ||||||||    
T  18355339 ttccagttcatccatgacaccata 18355316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 405
Target Start/End: Complemental strand, 8572792 - 8572742
Alignment:
Q  355 agaaattcatctagcaagtcatctgcaggatgaagcacatctttgagcctt 405  Q
    ||||||||||||| ||| |||||||||| |  |||||||||||||||||||    
T  8572792 agaaattcatctatcaaatcatctgcagcaacaagcacatctttgagcctt 8572742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 405
Target Start/End: Complemental strand, 28698752 - 28698702
Alignment:
Q  355 agaaattcatctagcaagtcatctgcaggatgaagcacatctttgagcctt 405  Q
    ||||||||||||| ||| |||||||||| |  |||||||||||||||||||    
T  28698752 agaaattcatctatcaaatcatctgcagcaacaagcacatctttgagcctt 28698702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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