View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6854_low_13 (Length: 513)

Name: NF6854_low_13
Description: NF6854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6854_low_13
NF6854_low_13
[»] chr2 (10 HSPs)
chr2 (71-510)||(2803204-2803643)
chr2 (12-52)||(2803724-2803764)
chr2 (426-500)||(33561499-33561573)
chr2 (53-92)||(2803634-2803673)
chr2 (426-498)||(30312825-30312897)
chr2 (401-503)||(13766795-13766899)
chr2 (426-499)||(29873586-29873659)
chr2 (457-498)||(36005930-36005971)
chr2 (426-510)||(2336660-2336744)
chr2 (457-501)||(31468797-31468841)
[»] chr5 (2 HSPs)
chr5 (396-510)||(10351209-10351325)
chr5 (426-498)||(36521946-36522018)
[»] chr6 (4 HSPs)
chr6 (426-503)||(8481962-8482039)
chr6 (426-493)||(5034876-5034943)
chr6 (426-467)||(27226675-27226716)
chr6 (426-498)||(6071168-6071240)
[»] chr4 (4 HSPs)
chr4 (401-479)||(42480533-42480611)
chr4 (457-503)||(22028412-22028458)
chr4 (426-498)||(34544142-34544215)
chr4 (434-510)||(23630348-23630424)
[»] chr1 (3 HSPs)
chr1 (426-498)||(1188638-1188710)
chr1 (457-503)||(32594761-32594807)
chr1 (426-499)||(1187413-1187486)
[»] chr8 (1 HSPs)
chr8 (426-503)||(4154326-4154402)
[»] chr7 (2 HSPs)
chr7 (461-510)||(7192786-7192835)
chr7 (457-498)||(21619095-21619136)
[»] chr3 (2 HSPs)
chr3 (426-467)||(260805-260846)
chr3 (401-478)||(32930698-32930775)


Alignment Details
Target: chr2 (Bit Score: 416; Significance: 0; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 71 - 510
Target Start/End: Complemental strand, 2803643 - 2803204
Alignment:
Q  71 ttaatgtttatgttaatgttaaagaggttcaataggacaagctggttttcgagatgctacttgattgtactttgtgatggattcaacatcatgcctcaat 170  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2803643 ttaatgttaatgttaatgttaaagaggttcaataggacaagctggttttcgagatgctacttgattgtactttgtgatggattcaacatcatgcctcaat 2803544  T
Q  171 gtttagcagcggttttctcggtaaagaggatgaatacataccacaactgtcactgccatgctctgattacacattcaaagcaaaggcccacccccactcg 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2803543 gtttagcagcggttttctcggtaaagaggatgaatacataccacaactgtcactgccatgctctgattacacattcaaagcaaaggaccacccccactcg 2803444  T
Q  271 gttacttacaatagtgttgatattcatattggacatgtttttcaaataagaaataacccttaaatatactttgtttcttacctaaggcaatgaaaaaatg 370  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2803443 gttacttactatagtgttgatattcatattggacatgtttttcaaataagaaataacccttaaatatactttgtttcttacctaaggcaatgaaaaaatg 2803344  T
Q  371 tgataccaacaccaacggcaacaattgtaggttaaaagtctcacattatttaaagaagtggaggttgaacattctataaaagagatgacccataaactca 470  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  2803343 tgataccaacaccaacggcaacaattgtaggttaaaagtctcacattgtttaaagaagtggaggttgaacattctataaaagagatgacccataaactta 2803244  T
Q  471 atgtcttaacgttttgggtaaaagtgtgatgtccatctca 510  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  2803243 atgtcttaacgttttgggtaaaagtgtgatgtccaactca 2803204  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 2803764 - 2803724
Alignment:
Q  12 acatcaaaaagccagagccatgaattcctaatgcatagtta 52  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  2803764 acatcaaaaagccagagccatgaattcctaatgcatagtta 2803724  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 426 - 500
Target Start/End: Complemental strand, 33561573 - 33561499
Alignment:
Q  426 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtgat 500  Q
    ||||||||||| |||| | |||||  |||| |||||||||||||| |||||||| ||||||||||| ||||||||    
T  33561573 aagtggaggttaaacactttataagtgagaggacccataaactcattgtcttaaggttttgggtaagagtgtgat 33561499  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 92
Target Start/End: Complemental strand, 2803673 - 2803634
Alignment:
Q  53 gttaatttgatcaaaatattaatgtttatgttaatgttaa 92  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  2803673 gttaattttatcaaaatattaatgtttatgttaatgttaa 2803634  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 426 - 498
Target Start/End: Original strand, 30312825 - 30312897
Alignment:
Q  426 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtg 498  Q
    |||||||||||||||| | |||||   |||||||||||||||| | |  ||||| ||||||||||||||||||    
T  30312825 aagtggaggttgaacactttataacttagatgacccataaacttatttccttaaggttttgggtaaaagtgtg 30312897  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 503
Target Start/End: Original strand, 13766795 - 13766899
Alignment:
Q  401 gttaaaagtctcacattatttaaagaagtggaggttgaacattctataaaa--gagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtg 498  Q
    |||| |||||| ||||| |||| | |||||||||||||  ||| |||||||  ||||||||  |||||||||||| ||||| |||||| || ||| ||||    
T  13766795 gttagaagtctaacattgtttagaaaagtggaggttgattattttataaaagtgagatgactaataaactcaatgacttaaggttttgtgttaaaatgtg 13766894  T
Q  499 atgtc 503  Q
     ||||    
T  13766895 gtgtc 13766899  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 499
Target Start/End: Complemental strand, 29873659 - 29873586
Alignment:
Q  426 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtga 499  Q
    |||||||||||||||||| |||||  | || ||| |||||||||| || ||||| |||||| |||| |||||||    
T  29873659 aagtggaggttgaacattttataagtgggaggactcataaactcattgccttaaggttttgagtaagagtgtga 29873586  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 498
Target Start/End: Complemental strand, 36005971 - 36005930
Alignment:
Q  457 gacccataaactcaatgtcttaacgttttgggtaaaagtgtg 498  Q
    |||||||||||||| || ||||| ||||||||||||||||||    
T  36005971 gacccataaactcattgccttaaggttttgggtaaaagtgtg 36005930  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 426 - 510
Target Start/End: Original strand, 2336660 - 2336744
Alignment:
Q  426 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtgatgtccatctca 510  Q
    |||||||||||||||| | |||||  |||| |||||||||| |||||| |||||  |||||||| ||  |||| |||||| ||||    
T  2336660 aagtggaggttgaacactttataagtgagaggacccataaattcaatgccttaagattttgggttaagatgtggtgtccaactca 2336744  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 457 - 501
Target Start/End: Complemental strand, 31468841 - 31468797
Alignment:
Q  457 gacccataaactcaatgtcttaacgttttgggtaaaagtgtgatg 501  Q
    |||||||||||||| || ||||| ||||||||||| |||||||||    
T  31468841 gacccataaactcattgccttaaggttttgggtaagagtgtgatg 31468797  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 396 - 510
Target Start/End: Complemental strand, 10351325 - 10351209
Alignment:
Q  396 tgtaggttaaaagtctcacattatttaaagaagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaa--cgttttgggtaaaa 493  Q
    |||| |||| ||||||||||||   |||| ||| |||||||||||||| ||||   || |||||||||||||||| ||||||||    ||||||||||||    
T  10351325 tgtaagttagaagtctcacattggctaaaaaagcggaggttgaacattttatacgtgaaatgacccataaactcattgtcttaaatatttttgggtaaaa 10351226  T
Q  494 gtgtgatgtccatctca 510  Q
    |||||||||| ||||||    
T  10351225 gtgtgatgtctatctca 10351209  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 426 - 498
Target Start/End: Complemental strand, 36522018 - 36521946
Alignment:
Q  426 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtg 498  Q
    |||| ||||||||||| ||| |||| |||| |||||||||||  | || ||||| ||||||||||| ||||||    
T  36522018 aagttgaggttgaacactctttaaatgagaggacccataaaccaattgccttaaggttttgggtaagagtgtg 36521946  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 426 - 503
Target Start/End: Original strand, 8481962 - 8482039
Alignment:
Q  426 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtgatgtc 503  Q
    |||||||||||||||| | |||||| |||||||| |||||||||| || |||||  |||||||||| |||||| ||||    
T  8481962 aagtggaggttgaacactttataaatgagatgactcataaactcattgccttaagattttgggtaagagtgtggtgtc 8482039  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 426 - 493
Target Start/End: Complemental strand, 5034943 - 5034876
Alignment:
Q  426 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaa 493  Q
    ||||||||||||| || | |||||  |||||||||||| |||||||||| |||| ||||||| |||||    
T  5034943 aagtggaggttgaccactttataagtgagatgacccatcaactcaatgttttaaggttttggataaaa 5034876  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 467
Target Start/End: Complemental strand, 27226716 - 27226675
Alignment:
Q  426 aagtggaggttgaacattctataaaagagatgacccataaac 467  Q
    ||||||||||||| |||| |||||| ||||||||||||||||    
T  27226716 aagtggaggttgatcattttataaatgagatgacccataaac 27226675  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 426 - 498
Target Start/End: Original strand, 6071168 - 6071240
Alignment:
Q  426 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtg 498  Q
    |||||||||||||||| | |||||  ||||||| ||||||||||| || |||||  |||||| ||| ||||||    
T  6071168 aagtggaggttgaacactttataagtgagatgatccataaactcattgccttaagattttggataagagtgtg 6071240  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 401 - 479
Target Start/End: Original strand, 42480533 - 42480611
Alignment:
Q  401 gttaaaagtctcacattatttaaagaagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaa 479  Q
    ||||||||||||| | ||||| || |||||||||||||||| | | |||  ||||||| |||||||||| |||||||||    
T  42480533 gttaaaagtctcatactatttgaaaaagtggaggttgaacaatatgtaagtgagatgatccataaactcgatgtcttaa 42480611  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 457 - 503
Target Start/End: Complemental strand, 22028458 - 22028412
Alignment:
Q  457 gacccataaactcaatgtcttaacgttttgggtaaaagtgtgatgtc 503  Q
    |||||||||||||| |||||||| ||||||||||| |||||| ||||    
T  22028458 gacccataaactcattgtcttaatgttttgggtaagagtgtggtgtc 22028412  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 498
Target Start/End: Original strand, 34544142 - 34544215
Alignment:
Q  426 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacg-ttttgggtaaaagtgtg 498  Q
    ||||||||||||| || | |||||| |||| |||||||||||||| || ||||| | |||||||||| ||||||    
T  34544142 aagtggaggttgatcactttataaatgagaggacccataaactcattgccttaaggtttttgggtaagagtgtg 34544215  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 434 - 510
Target Start/End: Original strand, 23630348 - 23630424
Alignment:
Q  434 gttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtgatgtccatctca 510  Q
    |||||||| | |||||  |||| ||| ||||||||||| |||||||   |||||||||||||||||| ||| |||||    
T  23630348 gttgaacactttataagtgagacgactcataaactcaacgtcttaagactttgggtaaaagtgtgatttccctctca 23630424  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 426 - 498
Target Start/End: Complemental strand, 1188710 - 1188638
Alignment:
Q  426 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtg 498  Q
    |||||||||||||| ||| |||||  |||| ||| |||||||||| ||  |||| ||||||||||||||||||    
T  1188710 aagtggaggttgaatattttataagtgagaagactcataaactcattgctttaaggttttgggtaaaagtgtg 1188638  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 457 - 503
Target Start/End: Complemental strand, 32594807 - 32594761
Alignment:
Q  457 gacccataaactcaatgtcttaacgttttgggtaaaagtgtgatgtc 503  Q
    |||||||||||||| |||||||| ||||||||||| |||||| ||||    
T  32594807 gacccataaactcattgtcttaaggttttgggtaagagtgtggtgtc 32594761  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 499
Target Start/End: Complemental strand, 1187486 - 1187413
Alignment:
Q  426 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtga 499  Q
    ||||||||||| |||||| |||||  |||| |||||||||||||| |  |||||  ||||| ||||||||||||    
T  1187486 aagtggaggttaaacattttataagtgagaagacccataaactcattaccttaagattttgagtaaaagtgtga 1187413  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 503
Target Start/End: Complemental strand, 4154402 - 4154326
Alignment:
Q  426 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtgatgtc 503  Q
    |||||||||||||||| | |||||  |||| |||||||||||||| || |||||  ||||||||||  ||||||||||    
T  4154402 aagtggaggttgaacactttataagtgaga-gacccataaactcattgccttaatattttgggtaagtgtgtgatgtc 4154326  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 461 - 510
Target Start/End: Original strand, 7192786 - 7192835
Alignment:
Q  461 cataaactcaatgtcttaacgttttgggtaaaagtgtgatgtccatctca 510  Q
    ||||||||||||||||||| |||||| |||||  ||||||||||| ||||    
T  7192786 cataaactcaatgtcttaaggttttgagtaaagatgtgatgtccaactca 7192835  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 498
Target Start/End: Complemental strand, 21619136 - 21619095
Alignment:
Q  457 gacccataaactcaatgtcttaacgttttgggtaaaagtgtg 498  Q
    ||||||||||| || |||||||| ||||||||||||||||||    
T  21619136 gacccataaacccattgtcttaaggttttgggtaaaagtgtg 21619095  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 467
Target Start/End: Complemental strand, 260846 - 260805
Alignment:
Q  426 aagtggaggttgaacattctataaaagagatgacccataaac 467  Q
    ||||||||||||| |||| |||||| ||||||||||||||||    
T  260846 aagtggaggttgatcattttataaatgagatgacccataaac 260805  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 478
Target Start/End: Original strand, 32930698 - 32930775
Alignment:
Q  401 gttaaaagtctcacattatttaaagaagtggaggttgaacattctataaaagagatgacccataaactcaatgtctta 478  Q
    |||| |||||| | ||| |||| | |||| || |||||||||| |||||  |||||||| ||||||||||||||||||    
T  32930698 gttagaagtcttatattgtttagaaaagtagaagttgaacattttataagtgagatgactcataaactcaatgtctta 32930775  T

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