View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6854_low_14 (Length: 513)
Name: NF6854_low_14
Description: NF6854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6854_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 21 - 284
Target Start/End: Original strand, 47555129 - 47555389
Alignment:
| Q |
21 |
gatggagtcagaaaaaagttctggatggatcgttaaaaagaacaataaaatataaactttaatatatgaacataaaatttatgtcgtaaaaagttta--- |
117 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47555129 |
gatggagtcagaaaaaagttctgggtgggtcgttaaaaagaacaataaaatataaactttaatatatgaacataaaatttatgtcgtaaaaagtttaaga |
47555228 |
T |
|
| Q |
118 |
--acagtttatcataaataaaattaaattacataccttagcaatttaaaataattttccacctattttgaagcatcattttatctcgagaaatgggaacc |
215 |
Q |
| |
|
| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
47555229 |
acaaagttgatcataaataaaataaaattacataccttagcaatttaaaataattttccacctattttgaatcatcattttatctcgagaaatgggaacc |
47555328 |
T |
|
| Q |
216 |
gctaaacgggtaagtaatcacaatatgtactctttataccaagtaattagttggtgaccagaattatag |
284 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47555329 |
gc--------taagtaatcacaatatgtactctttataccaagtaattagttggtgaccagaattatag |
47555389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 332 - 475
Target Start/End: Original strand, 47560305 - 47560450
Alignment:
| Q |
332 |
aagaaatttaatatagttaactcatgttgtacaaaacaagaagttaactcttgta--cctaacatactttatccttaataaaagtaaccggcacatatgt |
429 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47560305 |
aagaaatttaatatagttaactcatgttgtacaaaacaagaagttaactcttgtagtcataacatactttatccttaataaaagtaaccggcacatatgt |
47560404 |
T |
|
| Q |
430 |
atgaaatgtggttttttaaactttatgaataccaaattatttccct |
475 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47560405 |
atgaaatgtggttttttaaactttatgaataccaaattatttccct |
47560450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 393 - 471
Target Start/End: Original strand, 54005248 - 54005326
Alignment:
| Q |
393 |
atactttatccttaataaaagtaaccggcacatatgtatgaaatgtggttttttaaactttatgaataccaaattattt |
471 |
Q |
| |
|
||||||||||||||||| |||||| |||| |||| ||||||| || |||||||||||||||| |||| ||||||||| |
|
|
| T |
54005248 |
atactttatccttaatataagtaattggcatatatctatgaaaggtcgttttttaaactttataaatattaaattattt |
54005326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 471
Target Start/End: Original strand, 39477539 - 39477614
Alignment:
| Q |
397 |
tttatccttaataaaagtaaccggcacatatgtatgaaa-tgtggttttttaaactttatgaataccaaattattt |
471 |
Q |
| |
|
||||||||||||| |||||| | ||||||||||||||| || |||||||||||||| ||||||||||||||| |
|
|
| T |
39477539 |
tttatccttaatataagtaattgacacatatgtatgaaagattgtttttttaaactttacaaataccaaattattt |
39477614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 390 - 472
Target Start/End: Complemental strand, 19005275 - 19005193
Alignment:
| Q |
390 |
aacatactttatccttaataaaagtaaccggcacatatgtatgaaatgtggttttttaaactttatgaataccaaattatttc |
472 |
Q |
| |
|
||||||||||||| |||||| |||||| |||| |||||||||||| || |||||||||||||||| |||||||||||||||| |
|
|
| T |
19005275 |
aacatactttatctttaatataagtaattggcatatatgtatgaaaggttgttttttaaactttataaataccaaattatttc |
19005193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 397 - 471
Target Start/End: Original strand, 21933367 - 21933441
Alignment:
| Q |
397 |
tttatccttaataaaagtaaccggcacatatgtatgaaatgtggttttttaaactttatgaataccaaattattt |
471 |
Q |
| |
|
||||||||||||| |||||| ||| |||| ||||||| || ||||||| || ||||| ||||||||||||||| |
|
|
| T |
21933367 |
tttatccttaatacaagtaatttgcaaatatctatgaaaggtcgtttttttaagtttataaataccaaattattt |
21933441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 110
Target Start/End: Original strand, 17289460 - 17289540
Alignment:
| Q |
30 |
agaaaaaagttctggatggatcgttaaaaagaacaataaaatataaactttaatatatgaacataaaatttatgtcgtaaa |
110 |
Q |
| |
|
||||||||||| |||||| || ||||| ||| ||||| || |||||||||||||| |||| |||||||| |||||||| |
|
|
| T |
17289460 |
agaaaaaagtttgggatgggccgctaaaataaacgataaagtacaaactttaatatataaacacaaaatttacgtcgtaaa |
17289540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University