View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6854_low_15 (Length: 484)

Name: NF6854_low_15
Description: NF6854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6854_low_15
NF6854_low_15
[»] chr5 (3 HSPs)
chr5 (11-466)||(26380164-26380616)
chr5 (11-168)||(36429754-36429902)
chr5 (11-168)||(5348188-5348333)
[»] chr6 (4 HSPs)
chr6 (11-168)||(6008940-6009088)
chr6 (11-168)||(17732321-17732469)
chr6 (11-168)||(30709965-30710113)
chr6 (11-168)||(15347897-15348042)
[»] chr3 (3 HSPs)
chr3 (11-168)||(47471165-47471313)
chr3 (11-168)||(50837763-50837912)
chr3 (11-168)||(54560498-54560643)
[»] chr4 (2 HSPs)
chr4 (11-168)||(27455392-27455540)
chr4 (29-140)||(49681590-49681692)
[»] scaffold0102 (1 HSPs)
scaffold0102 (11-168)||(32824-32972)
[»] chr8 (2 HSPs)
chr8 (11-168)||(14791142-14791287)
chr8 (11-168)||(20111794-20111939)
[»] chr7 (1 HSPs)
chr7 (18-168)||(36067794-36067935)
[»] chr2 (2 HSPs)
chr2 (11-168)||(10256169-10256317)
chr2 (11-168)||(4593084-4593229)
[»] chr1 (1 HSPs)
chr1 (11-165)||(47445290-47445435)


Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 11 - 466
Target Start/End: Original strand, 26380164 - 26380616
Alignment:
Q  11 catcatcactcatgtctcatcttcagaatcaatcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcgatgagattatcaacaa 110  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||    
T  26380164 catcatcactcatgtctcatcttcagaatcaatcaatctttaaccctcaggctcattcaaatgggtttcctttttggagcagcgatgagattatcaataa 26380263  T
Q  111 caacaatgatcatcatcatcaattgtctcttgatctttctgcaatgacccttttggatgaagatcatcatcaacaacattctcaacctagcaacgttgtt 210  Q
    |||  || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26380264 caatgatcatcatcatcatcaattgtctcttgatctctctgcaatgacccttttggatgaagatcatcatcaacaacattctcaacctagcaacgttgtt 26380363  T
Q  211 aacaacatgtccagaatcagaggtaataatagtaataacaatcttgttgaatcattcactaacatgcctcgtttttgggaatctcatgcatacaacaaca 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||      |||    
T  26380364 aacaacatgtccagaatcagaggtaataatagtaataacaatcttgttgaaccattcactaacatgccttgtttttgggaatctcatgcat------aca 26380457  T
Q  311 acaataacaacgttgttgatgatgaaacagtaacagtaacacacccacgttaccaaaacatg---ggtggtggtggtagtccaaaagcctcaacttttgg 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||    
T  26380458 acaataacaacgttgttgatgatgaaacagtaacagtaacacacccacgttaccaaaacatgggtggtggtggtggtagtccaaaagcctcaacttttgg 26380557  T
Q  408 ggtttcacaaaatccacaaggtttagtttctgaaaatatcaagtggggtatgcaaaaag 466  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26380558 ggtttcacaaaatccacaaggtttagtttctgaaaatatcaagtggggtatgcaaaaag 26380616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 11 - 168
Target Start/End: Original strand, 36429754 - 36429902
Alignment:
Q  11 catcatcactcatgtctcatcttcagaatcaatcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcgatgagattatcaacaa 110  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||      ||||||||| |||| ||||||||| ||||||||||||| ||||      
T  36429754 catcatcactcatgtctcctcttcagaatcaatcactttttaaccctca------ttcaaatggatttcttttttggagcagcgatgagattaccaac-- 36429845  T
Q  111 caacaatgatcatcatcatcaattgtctcttgatctttctgcaatgacccttttggat 168  Q
     ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  36429846 -aacaatgatcatcatcatcaattgtctcttgatctttctgctacgacccttttggat 36429902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 11 - 168
Target Start/End: Original strand, 5348188 - 5348333
Alignment:
Q  11 catcatcactcatgtctcatcttcagaatcaatcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcgatgagattatcaacaa 110  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||      ||||||||| |||||||||||||| ||||||||||||||||||||    
T  5348188 catcatcactcatgtctcctcttcagaatcaatcactttttaaccctca------ttcaaatggatttcctttttggagcagcgatgagattatcaacaa 5348281  T
Q  111 caacaatgatcatcatcatcaattgtctcttgatctttctgcaatgacccttttggat 168  Q
    ||      || ||||||||||||||||||||||||||||||| | |||||||||||||    
T  5348282 ca------atgatcatcatcaattgtctcttgatctttctgctacgacccttttggat 5348333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 2e-47; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 11 - 168
Target Start/End: Complemental strand, 6009088 - 6008940
Alignment:
Q  11 catcatcactcatgtctcatcttcagaatcaatcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcgatgagattatcaacaa 110  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||||||      ||||||||| |||||||||||||| ||||||||||||||||||||    
T  6009088 catcatcactcatgtctcctcttcagaatcaatcacttttgaaccctca------ttcaaatggatttcctttttggagcagcgatgagattatcaacaa 6008995  T
Q  111 caacaatgatcatcatcatcaattgtctcttgatctttctgcaatgacccttttggat 168  Q
    |||   |||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  6008994 caa---tgatcatcatcatcaattgtctcttgatctttctgctacgacccttttggat 6008940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 11 - 168
Target Start/End: Complemental strand, 17732469 - 17732321
Alignment:
Q  11 catcatcactcatgtctcatcttcagaatcaatcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcgatgagattatcaacaa 110  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||      ||||||||| |||||||||||||| ||||||||||||||||||||    
T  17732469 catcatcactcatgtctcctcttcagaatcaatcactttttaaccctca------ttcaaatggatttcctttttggagcagcgatgagattatcaacaa 17732376  T
Q  111 caacaatgatcatcatcatcaattgtctcttgatctttctgcaatgacccttttggat 168  Q
    ||    |||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  17732375 cac---tgatcatcatcatcaattgtctcttgatctttctgctacgacccttttggat 17732321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 11 - 168
Target Start/End: Original strand, 30709965 - 30710113
Alignment:
Q  11 catcatcactcatgtctcatcttcagaatcaatcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcgatgagattatcaacaa 110  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||      ||||||||| |||| ||||||||| ||||||||||||| ||||      
T  30709965 catcatcactcatgtctcctcttcagaatcaatcactttttaaccctca------ttcaaatggatttcttttttggagcagcgatgagattaccaac-- 30710056  T
Q  111 caacaatgatcatcatcatcaattgtctcttgatctttctgcaatgacccttttggat 168  Q
     ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  30710057 -aacaatgatcatcatcatcaattgtctcttgatctttctgctacgacccttttggat 30710113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 11 - 168
Target Start/End: Original strand, 15347897 - 15348042
Alignment:
Q  11 catcatcactcatgtctcatcttcagaatcaatcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcgatgagattatcaacaa 110  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||||      ||||||||| ||||| |||||||| ||||||||||||||||||||    
T  15347897 catcatcactcatgtctcctctttagaatcaatcactttttaaccctca------ttcaaatggatttccattttggagcagcgatgagattatcaacaa 15347990  T
Q  111 caacaatgatcatcatcatcaattgtctcttgatctttctgcaatgacccttttggat 168  Q
    ||      || ||||||||||||||||||||||||||||||| | |||||||||||||    
T  15347991 ca------atgatcatcatcaattgtctcttgatctttctgctacgacccttttggat 15348042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 2e-47; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 11 - 168
Target Start/End: Original strand, 47471165 - 47471313
Alignment:
Q  11 catcatcactcatgtctcatcttcagaatcaatcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcgatgagattatcaacaa 110  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||      ||||||||| |||||||||||||| ||||||||||||| ||||      
T  47471165 catcatcactcatgtctcctcttcagaatcaatcactttttaaccctca------ttcaaatggatttcctttttggagcagcgatgagattaccaac-- 47471256  T
Q  111 caacaatgatcatcatcatcaattgtctcttgatctttctgcaatgacccttttggat 168  Q
     ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  47471257 -aacaatgatcatcatcatcaattgtctcttgatctttctgctacgacccttttggat 47471313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 11 - 168
Target Start/End: Complemental strand, 50837912 - 50837763
Alignment:
Q  11 catcatcactcatgtctcatcttcagaatcaatcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcgatgagattatcaacaa 110  Q
    |||||||||||||||||| |||||||||||||||||||||||||||     ||||||||||||| |||||||||||||| |||||||| |||||||||||    
T  50837912 catcatcactcatgtctcctcttcagaatcaatcactttttaaccc-----ctcattcaaatggatttcctttttggagcagcgatgaaattatcaacaa 50837818  T
Q  111 caacaatgatcatcatcatcaattgtctcttgatctttctgcaatgacccttttggat 168  Q
    ||    |||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  50837817 cac---tgatcatcatcatcaattgtctcttgatctttctgctacgacccttttggat 50837763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 11 - 168
Target Start/End: Original strand, 54560498 - 54560643
Alignment:
Q  11 catcatcactcatgtctcatcttcagaatcaatcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcgatgagattatcaacaa 110  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||      ||||||||| |||||||||||||| ||||||||||||||||||||    
T  54560498 catcatcactcatgtctcctcttcataatcaatcactttttaaccctca------ttcaaatggatttcctttttggagcagcgatgagattatcaacaa 54560591  T
Q  111 caacaatgatcatcatcatcaattgtctcttgatctttctgcaatgacccttttggat 168  Q
    ||      || ||||||||||||||||||||||||||||||| | |||||||||||||    
T  54560592 ca------atgatcatcatcaattgtctcttgatctttctgctacgacccttttggat 54560643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 11 - 168
Target Start/End: Original strand, 27455392 - 27455540
Alignment:
Q  11 catcatcactcatgtctcatcttcagaatcaatcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcgatgagattatcaacaa 110  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||||      ||||||||| |||||||||||||| ||||||||||||| ||||      
T  27455392 catcatcactcatgtctcctcttcagaataaatcactttttaaccctca------ttcaaatggatttcctttttggagcagcgatgagattaccaac-- 27455483  T
Q  111 caacaatgatcatcatcatcaattgtctcttgatctttctgcaatgacccttttggat 168  Q
     ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  27455484 -aacaatgatcatcatcatcaattgtctcttgatctttctgctacgacccttttggat 27455540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 29 - 140
Target Start/End: Complemental strand, 49681692 - 49681590
Alignment:
Q  29 atcttcagaatcaatcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcgatgagattatcaacaacaacaatgatcatcatca 128  Q
    ||||| |||||||||||||||||||||||||      |||||||||||||||||||||||| |||||||||||||||||||   ||||||||||||||||    
T  49681692 atctttagaatcaatcactttttaaccctca------ttcaaatgggtttcctttttggagcagcgatgagattatcaaca---acaatgatcatcatca 49681602  T
Q  129 tcaattgtctct 140  Q
    ||||||||||||    
T  49681601 tcaattgtctct 49681590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 11 - 168
Target Start/End: Original strand, 32824 - 32972
Alignment:
Q  11 catcatcactcatgtctcatcttcagaatcaatcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcgatgagattatcaacaa 110  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||      ||||||||| |||||||||||||| || |||||||||| ||||      
T  32824 catcatcactcatgtctccttttcagaatcaatcactttttaaccctca------ttcaaatggatttcctttttggagcagtgatgagattaccaac-- 32915  T
Q  111 caacaatgatcatcatcatcaattgtctcttgatctttctgcaatgacccttttggat 168  Q
     ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  32916 -aacaatgatcatcatcatcaattgtctcttgatctttctgctacgacccttttggat 32972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 11 - 168
Target Start/End: Original strand, 14791142 - 14791287
Alignment:
Q  11 catcatcactcatgtctcatcttcagaatcaatcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcgatgagattatcaacaa 110  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||      ||||||||| |||||||||||||| ||||||||||||||||||||    
T  14791142 catcatcactcatgtctcctcttcagaatcaatcactttttaaccctca------ttcaaatggatttcctttttggagcagcgatgagattatcaacaa 14791235  T
Q  111 caacaatgatcatcatcatcaattgtctcttgatctttctgcaatgacccttttggat 168  Q
    ||      || ||||||||||||||||||||||||||||||| | |||||||||||||    
T  14791236 ca------atgatcatcatcaattgtctcttgatctttctgctacgacccttttggat 14791287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 11 - 168
Target Start/End: Complemental strand, 20111939 - 20111794
Alignment:
Q  11 catcatcactcatgtctcatcttcagaatcaatcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcgatgagattatcaacaa 110  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||      ||||||||| ||| |||||||||| ||||||||||||| ||||||    
T  20111939 catcatcactcatgtctcatcttcaaaatcaatcactttttaaccctca------ttcaaatggattttctttttggagcagcgatgagattaccaacaa 20111846  T
Q  111 caacaatgatcatcatcatcaattgtctcttgatctttctgcaatgacccttttggat 168  Q
    |||      | ||||||||||||||||||||||||||||||| | |||||||||||||    
T  20111845 caa------tgatcatcatcaattgtctcttgatctttctgccacgacccttttggat 20111794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 7e-41; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 18 - 168
Target Start/End: Original strand, 36067794 - 36067935
Alignment:
Q  18 actcatgtctcatcttcagaatcaatcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcgatgagattatcaacaacaacaat 117  Q
    ||||||||||| |||||| |||||||||||||||||| ||||      ||||||||| |||||||||||||| ||||||||||||||||||   ||||||    
T  36067794 actcatgtctcctcttcaaaatcaatcactttttaactctca------ttcaaatggatttcctttttggagcagcgatgagattatcaac---aacaat 36067884  T
Q  118 gatcatcatcatcaattgtctcttgatctttctgcaatgacccttttggat 168  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  36067885 gatcatcatcatcaattgtctcttgatctttctgctacgacccttttggat 36067935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 11 - 168
Target Start/End: Original strand, 10256169 - 10256317
Alignment:
Q  11 catcatcactcatgtctcatcttcagaatcaatcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcgatgagattatcaacaa 110  Q
    |||||||||||||||||| |||| ||||||||||||||| |||||||||      ||||||||| ||||| |||||||| ||||||||||||| ||||      
T  10256169 catcatcactcatgtctcctcttgagaatcaatcactttctaaccctca------ttcaaatggatttccattttggagcagcgatgagattaccaac-- 10256260  T
Q  111 caacaatgatcatcatcatcaattgtctcttgatctttctgcaatgacccttttggat 168  Q
     ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  10256261 -aacaatgatcatcatcatcaattgtctcttgatctttctgctacgacccttttggat 10256317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 11 - 168
Target Start/End: Original strand, 4593084 - 4593229
Alignment:
Q  11 catcatcactcatgtctcatcttcagaatcaatcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcgatgagattatcaacaa 110  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||      ||||||||  |||||||||||||| ||||||||||||||||||||    
T  4593084 catcatcactcatgtctcctcttcataatcaatcactttttaaccctca------ttcaaatgaatttcctttttggagcagcgatgagattatcaacaa 4593177  T
Q  111 caacaatgatcatcatcatcaattgtctcttgatctttctgcaatgacccttttggat 168  Q
    ||      || ||||||||||||||||||||||||||||||| | |||||||||||||    
T  4593178 ca------atgatcatcatcaattgtctcttgatctttctgctacgacccttttggat 4593229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 11 - 165
Target Start/End: Complemental strand, 47445435 - 47445290
Alignment:
Q  11 catcatcactcatgtctcatcttcagaatcaatcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcgatgagattatcaacaa 110  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||||      ||||||||| |||||||||||||| | ||||||||||| ||||||    
T  47445435 catcaccactcatgtctcctcttcagaatcaatcactttttaaccctca------ttcaaatggatttcctttttggagcaacgatgagattaccaacaa 47445342  T
Q  111 caacaatgatcatcatcatcaattgtctcttgatctttctgcaatgacccttttg 165  Q
    |||   ||||||||||||| |||||||||||||||||||||| | ||||||||||    
T  47445341 caa---tgatcatcatcataaattgtctcttgatctttctgctacgacccttttg 47445290  T

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