View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6854_low_19 (Length: 467)
Name: NF6854_low_19
Description: NF6854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6854_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 13 - 456
Target Start/End: Original strand, 34955972 - 34956415
Alignment:
| Q |
13 |
taaaaaatcttggttcatactcacacctgaaaactaggaagcaacaaaagaagttttccacattacgccaaaattagaaggtaaattttatccgtatgcg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||| |
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| T |
34955972 |
taaaaaatcttggttcatactcacacctgaaaactaggaagcaacaaaagaagttttccacattacactagaattagaaggtaaattttatccgtatgcg |
34956071 |
T |
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| Q |
113 |
agtttaccttcttgacacgtacatatccttcaattctacatcccccggatgacggtgctggtctttttgaatcctctgtaacatttaatttatcctccaa |
212 |
Q |
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| T |
34956072 |
agtttaccttcttgacacgtacatatccttcaattctacatcccccggatgacggtgctggtctttttgaatcctctgtaacatttaatttatcctccaa |
34956171 |
T |
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| Q |
213 |
agctagcttatgatactctgaagggaaagacgccaatatattctccattgtctgcagcagagacacttcatatcaggcatgttgtactctaatggtaaac |
312 |
Q |
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| T |
34956172 |
agctagcttataatactctgaagggaaagacgccaatatattctccattgtctgcagcagagacacttcatatcaggcatgttgtactctaatggtaaac |
34956271 |
T |
|
| Q |
313 |
agtgatgttcaattatacttaaaagcataaacacttcaaagtaaaatgatacaaatcatgctaatttaaattaaatataatgtgtaccttaacaaggcta |
412 |
Q |
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| T |
34956272 |
agtgatgttcaattatacttaaaagcataaacacttcaaagtaaaatgatacaaatcatgctaatttaaattaaatataatgtgtaccttaacaaggcta |
34956371 |
T |
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| Q |
413 |
tctgtatcacgatctccataataagactcatgctcatgatgtcc |
456 |
Q |
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| T |
34956372 |
tctgtatcacgatctccataataagactcatgctcatgatgtcc |
34956415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 111 - 181
Target Start/End: Complemental strand, 31391327 - 31391257
Alignment:
| Q |
111 |
cgagtttaccttcttgacacgtacatatccttcaattctacatcccccggatgacggtgctggtctttttg |
181 |
Q |
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|||||||||||| || ||||| |||||||| |||| ||||||||| |||| |||||||||||||||||||| |
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| T |
31391327 |
cgagtttacctttttcacacgcacatatccctcaactctacatccaccggttgacggtgctggtctttttg |
31391257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 380 - 458
Target Start/End: Complemental strand, 31391094 - 31391018
Alignment:
| Q |
380 |
aaattaaatataatgtgtaccttaacaaggctatctgtatcacgatctccataataagactcatgctcatgatgtccat |
458 |
Q |
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||||||||||| |||| ||||| || ||||| ||||||||||| ||||||||||| |||||||| ||||||||||||| |
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| T |
31391094 |
aaattaaatat--tgtgaaccttgactaggctttctgtatcacggtctccataataggactcatgttcatgatgtccat |
31391018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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