View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6854_low_21 (Length: 457)
Name: NF6854_low_21
Description: NF6854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6854_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Complemental strand, 1184725 - 1184285
Alignment:
| Q |
1 |
ctctttgtatttgttttcctttgaactagaaccacaatatttcttgcatgatgcattgcattctatcttggcgtttataacgccattggatttccgcttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1184725 |
ctctttgtatttgttttcctttgaactagaaccacaatatttcttgcatgatgcattgcattctatcttggcgtttataacgtcattggatttccgcttt |
1184626 |
T |
|
| Q |
101 |
aaattaatattctgatctgttttgggatggattccatcatggatagcaccgccagataaaatcctgtctgcctcgtcaatctgcgccggtcttgcactcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1184625 |
aaattaatattctgatctgttttgggatggattccatcatggatagcaccgccagataaaatcctgtctgcctcgtcaatctgcgccggtcttgcactcc |
1184526 |
T |
|
| Q |
201 |
tttcatggagaaaggttttgactttcgattcatgtttcctttttgagattgaactggaacatgaaactgcccagtggttgagctgaaaacatttaatgca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1184525 |
cttcatggagaaaggttttgactttcgattcatgtttcctttttgagattgaactggaacatgaaactgcccagtggttgagctgaaaacatttaatgca |
1184426 |
T |
|
| Q |
301 |
catcaaaggaaaattttccggaccttcatatgaatttacattctcctgaagatcttctagctcactttctgcaactgccgagcaatcattgagttggtga |
400 |
Q |
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| T |
1184425 |
catcaaaggaaaattttccggaccttcatatgaatttacattctcctgaagatcttctagctcactttctgcaactgctgagcaatcactgagttggtga |
1184326 |
T |
|
| Q |
401 |
cctcgttttccacaaaacaaacaaaacagatttacttgtga |
441 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| |
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| T |
1184325 |
cctctttttccacaaaacaaacaaaacagatttacttgtga |
1184285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Original strand, 16993073 - 16993513
Alignment:
| Q |
1 |
ctctttgtatttgttttcctttgaactagaaccacaatatttcttgcatgatgcattgcattctatcttggcgtttataacgccattggatttccgcttt |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
16993073 |
ctctttgtatttgttttcctttgaactagaaccacaatatttcttgcatgatgcattgcattctatcttggcgtttataacgtcattggatttccgcttt |
16993172 |
T |
|
| Q |
101 |
aaattaatattctgatctgttttgggatggattccatcatggatagcaccgccagataaaatcctgtctgcctcgtcaatctgcgccggtcttgcactcc |
200 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
16993173 |
aaattcatattctgatctgttttgggatggattccatcatggatagcaccgccagataaaatcatgtctgcctcgtcaatctccgccggtcttgcactcc |
16993272 |
T |
|
| Q |
201 |
tttcatggagaaaggttttgactttcgattcatgtttcctttttgagattgaactggaacatgaaactgcccagtggttgagctgaaaacatttaatgca |
300 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16993273 |
cttcatggagaaaagttttgactttcgattcatgtttcctttttgagattgaactggaacatgaaactgcccagtggttgagctgaaaacatttaatgca |
16993372 |
T |
|
| Q |
301 |
catcaaaggaaaattttccggaccttcatatgaatttacattctcctgaagatcttctagctcactttctgcaactgccgagcaatcattgagttggtga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
16993373 |
catcaaaggaaaattttccggaccttcatatgaatttacattctcctgaagatcttctagctcactttctgcaactgctgagcaatcactgagttggtga |
16993472 |
T |
|
| Q |
401 |
cctcgttttccacaaaacaaacaaaacagatttacttgtga |
441 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
16993473 |
cctctttttccacaaaacaaacaaaacagatttacttgtga |
16993513 |
T |
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