View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6854_low_22 (Length: 437)
Name: NF6854_low_22
Description: NF6854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6854_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 21 - 425
Target Start/End: Original strand, 24725167 - 24725571
Alignment:
| Q |
21 |
actcctaccataagtcactggatgctttgcccagtctatagcagactttctatcaatcaaaaattccatcttctcctcttcctttagattcatttctacc |
120 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
24725167 |
actcctaccataagtcactggatgcttagcccagtctatagcagactttctatcaatcaaaaattccatcttctcctcttcctttagattcatttctagc |
24725266 |
T |
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| Q |
121 |
aaaaacatggtaatccattgagattgacggacatccatagaagctgcaatatattcagcttcacatgaagacagtgcaacgattgcttcattcataaaac |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
24725267 |
aaaaacatggtaatccattgagattgacggacatccatagaagccgcaatatattcagcttcacatgaagacagtgcaacaattgcttcattcataaaac |
24725366 |
T |
|
| Q |
221 |
tacatgatactgctacatttccatttcatcttcagaagaagaggtactactattctcactctattcaccatcactttttatattcacattctatatcgat |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24725367 |
tacatgatactgctacatttccatttcatcttcagaagaagaggtactactattctcactctattcaccatcactttttatattcacattctatatcgat |
24725466 |
T |
|
| Q |
321 |
accattcccgataatggaatcctttaattaaagttacaagttacgagattgaaaactttgtnnnnnnnntaacttacgagattgaaaatactttataata |
420 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
24725467 |
accattaccgataatggaatcctttaattaaagttacaagttacgagattgaaaactttgtaaaaaatataacttacgagattgaaaatactttataatt |
24725566 |
T |
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| Q |
421 |
ttgtt |
425 |
Q |
| |
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||||| |
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| T |
24725567 |
ttgtt |
24725571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 326
Target Start/End: Complemental strand, 8837862 - 8837825
Alignment:
| Q |
289 |
catcactttttatattcacattctatatcgataccatt |
326 |
Q |
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|||||||||| |||||||||||||||||| |||||||| |
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| T |
8837862 |
catcacttttcatattcacattctatatctataccatt |
8837825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 191
Target Start/End: Complemental strand, 17342546 - 17342510
Alignment:
| Q |
155 |
ccatagaagctgcaatatattcagcttcacatgaaga |
191 |
Q |
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|||||||||||||||| |||||||||||||| ||||| |
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| T |
17342546 |
ccatagaagctgcaatgtattcagcttcacaagaaga |
17342510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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