View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6854_low_24 (Length: 427)
Name: NF6854_low_24
Description: NF6854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6854_low_24 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 10 - 420
Target Start/End: Complemental strand, 3734033 - 3733622
Alignment:
| Q |
10 |
tactattcatctaggttcggttatatttttagggatgcaatatattgaagcattctaccttgttttaaatnnnnnnnttagagaagaaaaatcgttaaca |
109 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
3734033 |
tactattcatctagattcggttatatttttagggatgcaatatattgaagcattctaccttgttttaaataaaaaaaatagagaagaaaaatcgttaaca |
3733934 |
T |
|
| Q |
110 |
acaactgtgacactaattccctcaaaaaagaacggtgaaactaattatcactttacaaaaatttcatatgagatttgaaattaaataattcaagcactta |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3733933 |
acaactgtgacactaattccctcaaaaaagaacggtgaaactaattatcactttacaaaaatttcatatgagatttgaaattaaataattcaagcactta |
3733834 |
T |
|
| Q |
210 |
tgactaagctgacttatcataaagataatgatgca-nnnnnnnaattgcaaaaaacttagggtgaagggaaggtgcccctagttcaaggcagagaaaact |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||| |||||||| ||||||| |
|
|
| T |
3733833 |
tgactaagctgacttatcataaagataatgatgcattttttttaattgcaaaaaacttagggtgaaggaaagatgcccctagtccaaggcagggaaaact |
3733734 |
T |
|
| Q |
309 |
aatggtgctcgaattcgggacctctcagattcaagacttgtcttgttactactagatcactagataaagcccatggaatttaacgatgcattctacctac |
408 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||| ||||||| | |||||||||||||||||||| |||||| |||||||||||||||||||||||| || |
|
|
| T |
3733733 |
aatggtgctcgaactcggaacctctcagattcaaaacttgtccttttactactagatcactagatcaagcccttggaatttaacgatgcattctacccac |
3733634 |
T |
|
| Q |
409 |
aaaggttaaata |
420 |
Q |
| |
|
|||||||||||| |
|
|
| T |
3733633 |
aaaggttaaata |
3733622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University