View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6854_low_25 (Length: 426)
Name: NF6854_low_25
Description: NF6854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6854_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 16 - 407
Target Start/End: Complemental strand, 7624917 - 7624517
Alignment:
| Q |
16 |
tatcacttccacttctactaggcatatatgtcttatatatgcgtttacttttcactctctttgaagaccctggcttcaaaatatgaaccttcttcagtat |
115 |
Q |
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| T |
7624917 |
tatcacttccacttctactaggcatatatgtcttatatatgcgtttacttttcactctctttgaagaccctggcttcaaaatatgaaccttcttcagtat |
7624818 |
T |
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| Q |
116 |
tgatcctacccttatttgtagctccactggcctatcactcaggttccaaatccttgtccctaatccataggcttgagtctgatcatagcaggtatcaaag |
215 |
Q |
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| T |
7624817 |
tgatcctacccttatttgtagctccactggcctatcactcaggttccaaatccttgtccctaatccataggcttgagtctgatcatagcaggtatcaaag |
7624718 |
T |
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| Q |
216 |
caacctccaagagattgtaggctcaaacctctcattttccccatgagagactccaactgatttttagtcatcttaggctt---------agtttgtgcta |
306 |
Q |
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| T |
7624717 |
caacctccaagagattgaaggctcaaacctctcattttccccatgagagactccaactgatttttagtcatcttaggcttcctatgaaaagtttgtgcta |
7624618 |
T |
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| Q |
307 |
aagaagcttcatttatatctatatataaaggttcatcaaattattcatgtccttgtaataaagatgatttctttgacttgtcaatatgtattaatatgat |
406 |
Q |
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| T |
7624617 |
aagaagcttcatttatatctatatataaaggttcatcaaattattcatgtccttgtaataaagatgatttctttgacttgtcaatatgtattaatatgat |
7624518 |
T |
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| Q |
407 |
a |
407 |
Q |
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| T |
7624517 |
a |
7624517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 33 - 181
Target Start/End: Original strand, 48594421 - 48594569
Alignment:
| Q |
33 |
ctaggcatatatgtcttatatatgcgtttacttttcactctctttgaagaccctggcttcaaaatatgaaccttcttcagtattgatcctacccttattt |
132 |
Q |
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||||||||||||| |||||||||| ||||| ||| | |||||||||||||||||||||||| |||||| ||| |||||||||||||| |||||||||| |
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| T |
48594421 |
ctaggcatatatgccttatatatgtttttacatttgagtctctttgaagaccctggcttcaatgtatgaatctttttcagtattgatcccacccttattt |
48594520 |
T |
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| Q |
133 |
gtagctccactggcctatcactcaggttccaaatccttgtccctaatcc |
181 |
Q |
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| T |
48594521 |
gcagctccactggcttatcactcaggttccatatcctcgtcccgaatcc |
48594569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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