View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6854_low_29 (Length: 379)
Name: NF6854_low_29
Description: NF6854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6854_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 12137180 - 12136840
Alignment:
| Q |
1 |
gatttcacctaagattcttatccttgactaaaagaaaacagtcaacaataatgaagaaggaaatagtccaggaaatcaaatgtcataattaaatatataa |
100 |
Q |
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| T |
12137180 |
gatttcacctaagattcttatccttgactaaaagaaaacagtcaacaataatgaaggaggaaatagtccaggaaatcaaatgtcataattaaatatataa |
12137081 |
T |
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| Q |
101 |
ataacaataacaattggttttccccaaacaaaaactgctattaagtgttaaaaagaaattctgctagaaattaaatactacaacgcttagtcgcttatcg |
200 |
Q |
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| T |
12137080 |
ataacaataacaattggttttccccaaacaaaaactgctattaagtgttaaaaagaaattctgctagaaattaaatactacaacgcttagtcgcttatcg |
12136981 |
T |
|
| Q |
201 |
tttaaaaagcacaacagaataatatgcaatcaaaaaggttacctctagagagacatggacatgatcgtcatctcattttcaatgtgatcacaacttagac |
300 |
Q |
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| T |
12136980 |
tttaaaaagcacaacagaataatatgcaatcaaaaaggttacctctagagagacatggacatgatcgtcatctcattttcaatgtgatcacaacttagag |
12136881 |
T |
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| Q |
301 |
gccgtataatctcatttggttgaacaaaatgtgatcacaac |
341 |
Q |
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| T |
12136880 |
gccgtataatctcatttggttgaacaaaatgtgatcacaac |
12136840 |
T |
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