View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6854_low_30 (Length: 352)
Name: NF6854_low_30
Description: NF6854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6854_low_30 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 14 - 333
Target Start/End: Original strand, 3427555 - 3427874
Alignment:
| Q |
14 |
gtttggtgttgcacctaagggtagatccggtggaccacatgttgaaaggtcaggtggggatattggagaagctagggcaaaagggttagtggtgaaagta |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3427555 |
gtttggtgttgcacctaagggtagatccggtggaccacatgttgaaaggtcaggtggggatattggagaagctagggcaaaagggttagtggtgaaagta |
3427654 |
T |
|
| Q |
114 |
ccacaaagtcctccaaggccaattagaacattcctcctatttcctacaacaatgttttgtggttcttgttcctctttagggttgtattggttactattat |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
3427655 |
ccacaaagtcctccaaggccaattagaacattcctcctatttcctacaacaatgttttgtggttcttgttcctctttagggttgttttggttactattat |
3427754 |
T |
|
| Q |
214 |
taccactcaatctgatcacttggcgtcttggtaattttctatgtctagaatatttttgttgtttttgtgaaaatggataggaagaaggggaaacctttga |
313 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
3427755 |
taccactcaatgtgatcacttggcgtcttgataattttctatgtctagaatatttttgttgtttttgtgaaaatggataggaagaaggggaaatctttga |
3427854 |
T |
|
| Q |
314 |
gttggaagagacattgattg |
333 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
3427855 |
gttggaagagacattgattg |
3427874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 292
Target Start/End: Original strand, 3433750 - 3434024
Alignment:
| Q |
18 |
ggtgttgcacctaagggtagatccggtggaccacatgttgaaaggtcaggtggggatattggagaagctagggcaaaagggttagtggtgaaagtaccac |
117 |
Q |
| |
|
||||| |||||| |||||||||| ||||| |||||||| |||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
3433750 |
ggtgtagcacctgagggtagatctggtggtccacatgtagaaaggtctggtgcggatattggagaagctagggcaaaagggttagcggtgaaagtaccac |
3433849 |
T |
|
| Q |
118 |
aaagtcctccaaggccaattagaacattcctcctatttcctacaacaatgttttgtggttcttgttcctctttagggttgtattggttactattattacc |
217 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| || ||| ||||||||||||| |||||||| ||||||||| |
|
|
| T |
3433850 |
aaagtcctccaaggccaactagaacattcctcctatttcctacaacaatgttttgtagttgttcttcttctttagggttgttttggttaccattattacc |
3433949 |
T |
|
| Q |
218 |
actcaatctgatcacttggcgtcttggtaattttctatgtctagaatatttttgttgtttttgtgaaaatggata |
292 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||| ||||| |||| ||||||||||||||||||||||| |
|
|
| T |
3433950 |
actcaatgtgatcacttggcgtcttggtaatattctatgtttagaagatttctgttgtttttgtgaaaatggata |
3434024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 14 - 292
Target Start/End: Complemental strand, 11912027 - 11911749
Alignment:
| Q |
14 |
gtttggtgttgcacctaagggtagatccggtggaccacatgttgaaaggtcaggtggggatattggagaagctagggcaaaagggttagtggtgaaagta |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11912027 |
gtttggtgttgcacctaagggtagatccggtggaccacatgtagaaaggtcaggtggggatattggagaagctagggcaaaagggttagtggtgaaagta |
11911928 |
T |
|
| Q |
114 |
ccacaaagtcctccaaggccaattagaacattcctcctatttcctacaacaatgttttgtggttcttgttcctctttagggttgtattggttactattat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||| ||| |
|
|
| T |
11911927 |
ccacaaagtcctccaaggccaattagaacatttctcctatttcctacaacaatgttttgtagttcttgttcttctttagggttgttttggttactaatat |
11911828 |
T |
|
| Q |
214 |
taccactcaatctgatcacttggcgtcttggtaattttctatgtctagaatatttttgttgtttttgtgaaaatggata |
292 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||| |
|
|
| T |
11911827 |
taccactgaatgtgatcacttggcgtcttggtaattttctatgtttagaagatttttgttgtttttgtgaaaattgata |
11911749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 57 - 292
Target Start/End: Complemental strand, 11896684 - 11896449
Alignment:
| Q |
57 |
gaaaggtcaggtggggatattggagaagctagggcaaaagggttagtggtgaaagtaccacaaagtcctccaaggccaattagaacattcctcctatttc |
156 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
11896684 |
gaaaggtcaggtggggatattggagaagctagggcaaaagggttagtggtgaaagtaccacaaagtcctccaaggccaattagaacatttctcctatttc |
11896585 |
T |
|
| Q |
157 |
ctacaacaatgttttgtggttcttgttcctctttagggttgtattggttactattattaccactcaatctgatcacttggcgtcttggtaattttctatg |
256 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||||||| |||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
11896584 |
ctacaacaatgttttgtagttcttgttcttctttagggttgttttggttactaatattaccactgaatgtgatcacttggcgtcttggtaattttctatg |
11896485 |
T |
|
| Q |
257 |
tctagaatatttttgttgtttttgtgaaaatggata |
292 |
Q |
| |
|
| ||||| ||||||||||||||||||||||| |||| |
|
|
| T |
11896484 |
tttagaagatttttgttgtttttgtgaaaattgata |
11896449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University