View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6854_low_32 (Length: 341)
Name: NF6854_low_32
Description: NF6854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6854_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 131; Significance: 6e-68; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 39 - 213
Target Start/End: Original strand, 39370264 - 39370437
Alignment:
| Q |
39 |
tggacatcattataccccactcccccacctgaactatcaagccaacttttttctcctttctttggtgaagaattgtttgtaaagcaaccagagaaaatct |
138 |
Q |
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| T |
39370264 |
tggacctcattataccccactcccccacctgaactatcaagccaacttttttctcctttctttggtgaagaattgtttgtaaagcaacctgagaaaatct |
39370363 |
T |
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| Q |
139 |
ccacacaagggnnnnnnnnnctcaataaaaatttattactcaacctgaatgatataagaacaaaattgcaaaccc |
213 |
Q |
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| T |
39370364 |
tcacacaaggg-aaaaaaaactcaataaaaatttattactcaacctgaatgatataagaacaaaattgcaaaccc |
39370437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 39370424 - 39370477
Alignment:
| Q |
238 |
aaaattgcaaaccccctcaagatacacaattatccaagctcccaatgcaccaaa |
291 |
Q |
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| T |
39370424 |
aaaattgcaaaccccatcaagatacacaattatccaagctcccaatgcaccaaa |
39370477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 248
Target Start/End: Original strand, 32496719 - 32496767
Alignment:
| Q |
199 |
caaaattgcaaaccctctcaattacaatttgtgcacagaaaaattgcaaa |
248 |
Q |
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| T |
32496719 |
caaaattgcaaacc-tctcaattataatttttgcacagagaaattgcaaa |
32496767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 251
Target Start/End: Original strand, 37883016 - 37883075
Alignment:
| Q |
191 |
tataagaacaaaattgcaaaccctctcaattacaatttgtgcacagaaaaattgcaaaccc |
251 |
Q |
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| T |
37883016 |
tataaggacaaaattgcaaacc-tctcgattacaatttttgcatggaaaaattgcaaaccc |
37883075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 250
Target Start/End: Original strand, 27048996 - 27049043
Alignment:
| Q |
202 |
aattgcaaaccctctcaattacaatttgtgcacagaaaaattgcaaacc |
250 |
Q |
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| T |
27048996 |
aattgcaaacc-tctcaattgcaatttttgcacggaaaaattgcaaacc |
27049043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 276
Target Start/End: Original strand, 9687435 - 9687510
Alignment:
| Q |
200 |
aaaattgcaaaccctctcaattacaatttgtgcacagaaaaattgcaaaccccctcaagatacacaattatccaagc |
276 |
Q |
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| T |
9687435 |
aaaattgcaaaccctctcaattaatatctttgca-tggaaaattgcaaaccctctcaagacacacaactattcaagc |
9687510 |
T |
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