View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6854_low_33 (Length: 327)

Name: NF6854_low_33
Description: NF6854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6854_low_33
NF6854_low_33
[»] chr3 (1 HSPs)
chr3 (24-309)||(32685106-32685395)


Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 24 - 309
Target Start/End: Complemental strand, 32685395 - 32685106
Alignment:
Q  24 attcaaaattagtacaaatgttggacataacgaaaataaacataatttatttgtatattgtggtcataattcaaaattagctgatgaatcctcaaatcac 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32685395 attcaaaattagtacaaatgttggacataacgaaaataaacataatttatttgtatattgtggtcataattcaaaattagctgatgaatcctcaaatcac 32685296  T
Q  124 -----atgattagtaaattttgttgaattatgtccattctagagataaataatgataatttagactatatcaaaccttgtggcttatattgaaaagaatg 218  Q
         |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  32685295 atgacatgattagtaaactttgtagaattatgtccattctagagataaataatgataatttagactttatcaaaccttgtggcttatattgaaaagaatg 32685196  T
Q  219 tca-cccatcaacattcatggcttatgtaattcatatatatgttcatttatggtcaaaaaagaaagacatgatcacataagttcgaaatgat 309  Q
    ||| |||||||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  32685195 tcaccccatcaacattcatggcttatgtaattc--atatatgttcatttatgatcaaaaaagaaagacatgatcacataagttcgaaatgat 32685106  T

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