View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6854_low_35 (Length: 326)

Name: NF6854_low_35
Description: NF6854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6854_low_35
NF6854_low_35
[»] chr2 (4 HSPs)
chr2 (111-304)||(11237019-11237212)
chr2 (20-119)||(14811580-14811679)
chr2 (20-116)||(14314062-14314157)
chr2 (83-116)||(13043622-13043655)
[»] chr7 (8 HSPs)
chr7 (20-119)||(19927928-19928027)
chr7 (20-119)||(40819605-40819704)
chr7 (20-119)||(25443902-25444001)
chr7 (20-119)||(26279619-26279718)
chr7 (20-116)||(30947867-30947962)
chr7 (31-82)||(22205008-22205059)
chr7 (31-82)||(22229680-22229731)
chr7 (31-81)||(22293205-22293255)
[»] chr8 (9 HSPs)
chr8 (20-119)||(17068479-17068578)
chr8 (20-119)||(17579695-17579794)
chr8 (20-116)||(29054870-29054966)
chr8 (20-116)||(34964423-34964519)
chr8 (20-119)||(17630837-17630936)
chr8 (20-119)||(20289644-20289743)
chr8 (20-119)||(21076274-21076373)
chr8 (20-95)||(10861482-10861557)
chr8 (21-81)||(3046447-3046507)
[»] chr3 (13 HSPs)
chr3 (20-119)||(25041643-25041742)
chr3 (21-119)||(959139-959237)
chr3 (20-116)||(39580200-39580296)
chr3 (21-116)||(21869161-21869256)
chr3 (20-119)||(4533774-4533873)
chr3 (20-116)||(42864577-42864669)
chr3 (68-115)||(39674485-39674532)
chr3 (21-82)||(22976432-22976493)
chr3 (77-119)||(53330421-53330463)
chr3 (77-119)||(53334105-53334147)
chr3 (77-119)||(53337782-53337824)
chr3 (27-82)||(29360074-29360129)
chr3 (83-116)||(29360014-29360047)
[»] scaffold0017 (1 HSPs)
scaffold0017 (20-119)||(37725-37824)
[»] chr4 (1 HSPs)
chr4 (20-119)||(54260429-54260528)
[»] chr6 (2 HSPs)
chr6 (21-119)||(21112392-21112490)
chr6 (20-119)||(8862334-8862433)
[»] chr5 (5 HSPs)
chr5 (20-116)||(8871551-8871647)
chr5 (20-119)||(13854368-13854466)
chr5 (20-87)||(36606474-36606541)
chr5 (26-82)||(6666038-6666094)
chr5 (20-66)||(32659267-32659313)
[»] chr1 (1 HSPs)
chr1 (23-117)||(46397774-46397868)


Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 111 - 304
Target Start/End: Complemental strand, 11237212 - 11237019
Alignment:
Q  111 gaaacagaggataccatggcaagagccaacgatgagatcgaaaaggtttcgaattcgattgttcagagggtaatctagctgtgtggcggtcgaggttacg 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  11237212 gaaacagaggataccatggcaagagccaacgatgagatcgaaaaggtttcgaattcgattgttcagagggtaatctagctgtgtggcggtggaagttacg 11237113  T
Q  211 tcggtgaagaaggaggagagaggataagctgagagggcgaatttgcgagaggagttggcgaaggctaagacgagatggaggcgcgtggtggaca 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  11237112 tcggtgaagaaggaggagagaggataagctgagagggcgaatttgcgagaggaattggcgaaggctaagacgagatggaggcgcgtggtggaca 11237019  T

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Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 14811679 - 14811580
Alignment:
Q  20 gaacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaaggaacataacattagagagaagagaaacagag 119  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||| ||||    
T  14811679 gaacatctttgtctaatgttgactacttaacagttaacactaatttatatcgaaaacaaacaatagaagaaacataacattagagagaagagaaatagag 14811580  T

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Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 14314062 - 14314157
Alignment:
Q  20 gaacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaaggaacataacattagagagaagagaaaca 116  Q
    |||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  14314062 gaacatttttgtctaatgttgactacttaacagttaacactaatttatatcgaaaacaaacagca-aagaaacataacattagagagaagagaaaca 14314157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 116
Target Start/End: Original strand, 13043622 - 13043655
Alignment:
Q  83 cagaaggaacataacattagagagaagagaaaca 116  Q
    |||||| |||||||||||||||||||||||||||    
T  13043622 cagaagaaacataacattagagagaagagaaaca 13043655  T

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Target: chr7 (Bit Score: 96; Significance: 5e-47; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 20 - 119
Target Start/End: Original strand, 19927928 - 19928027
Alignment:
Q  20 gaacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaaggaacataacattagagagaagagaaacagag 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  19927928 gaacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 19928027  T

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Target: chr7; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 20 - 119
Target Start/End: Original strand, 40819605 - 40819704
Alignment:
Q  20 gaacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaaggaacataacattagagagaagagaaacagag 119  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  40819605 gaacatctttatctaatgttgactacttaactgttatcactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 40819704  T

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Target: chr7; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 25444001 - 25443902
Alignment:
Q  20 gaacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaaggaacataacattagagagaagagaaacagag 119  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  25444001 gaacatctttgtctaatgttgactacttaacagttaacactaatttatatcgaaaacaaatagcagaagaaacataacattagagagaagagaaacagag 25443902  T

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Target: chr7; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 20 - 119
Target Start/End: Original strand, 26279619 - 26279718
Alignment:
Q  20 gaacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaaggaacataacattagagagaagagaaacagag 119  Q
    |||||||||| || |||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  26279619 gaacatctttgtccaatgttgactacttaacagttaacattaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 26279718  T

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Target: chr7; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 30947962 - 30947867
Alignment:
Q  20 gaacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaaggaacataacattagagagaagagaaaca 116  Q
    |||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||| ||||||||| | |||||||||||||||    
T  30947962 gaacatctttgtctaatgttgactatttaacagttaacactaatttatatcgaaaacaaacggcagaagaaacataaca-tcgagagaagagaaaca 30947867  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 82
Target Start/End: Original strand, 22205008 - 22205059
Alignment:
Q  31 tctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacag 82  Q
    ||||||||||||||| ||| ||||| ||||||||||||||||||| ||||||    
T  22205008 tctaatgttgactacctaatagttaacactaatttatatcgaaaagaaacag 22205059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 22229731 - 22229680
Alignment:
Q  31 tctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacag 82  Q
    ||||||||||||||| ||| ||||| ||||||||||||||||||| ||||||    
T  22229731 tctaatgttgactacctaatagttaacactaatttatatcgaaaagaaacag 22229680  T

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Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 22293255 - 22293205
Alignment:
Q  31 tctaatgttgactacttaacagttatcactaatttatatcgaaaacaaaca 81  Q
    ||||||||||||||||||| ||||| |||||||||| ||| ||||||||||    
T  22293255 tctaatgttgactacttaatagttaacactaatttagatcaaaaacaaaca 22293205  T

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Target: chr8 (Bit Score: 88; Significance: 3e-42; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 17068578 - 17068479
Alignment:
Q  20 gaacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaaggaacataacattagagagaagagaaacagag 119  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  17068578 gaacatctttgtctaatgttgactacttaacagttaacactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 17068479  T

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Target: chr8; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 20 - 119
Target Start/End: Original strand, 17579695 - 17579794
Alignment:
Q  20 gaacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaaggaacataacattagagagaagagaaacagag 119  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  17579695 gaacatctttgtctaatgttgactacttaacagttaacactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 17579794  T

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Target: chr8; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 29054966 - 29054870
Alignment:
Q  20 gaacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaaggaacataacattagagagaagagaaaca 116  Q
    |||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  29054966 gaacatctttgtctaatgttgactacttaaccgttaacactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaaca 29054870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 34964423 - 34964519
Alignment:
Q  20 gaacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaaggaacataacattagagagaagagaaaca 116  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||    
T  34964423 gaacatctttgtctaatgttgactacttaacagttaacactaatttacatcgaaaacaaacagcagaataaacataacattagagagaagagaaaca 34964519  T

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Target: chr8; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 20 - 119
Target Start/End: Original strand, 17630837 - 17630936
Alignment:
Q  20 gaacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaaggaacataacattagagagaagagaaacagag 119  Q
    |||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||    
T  17630837 gaacatatttgtctaatgttgactacttaacagttaacactaatttatatcgaaaactaacagcagaataaacataacattagagagaagagaaacagag 17630936  T

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Target: chr8; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 20289743 - 20289644
Alignment:
Q  20 gaacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaaggaacataacattagagagaagagaaacagag 119  Q
    |||||||||| ||||||||| | |||||||| |||| ||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||    
T  20289743 gaacatctttgtctaatgttaattacttaacggttaacactaatttatatcgaaaacaaacaacataagaaacataacattagagagaagagaaacagag 20289644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 21076373 - 21076274
Alignment:
Q  20 gaacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaaggaacataacattagagagaagagaaacagag 119  Q
    |||||||||| ||||||||| | |||||||| |||| ||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||    
T  21076373 gaacatctttgtctaatgttaattacttaacggttaacactaatttatatcgaaaacaaacaacataagaaacataacattagagagaagagaaacagag 21076274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 10861482 - 10861557
Alignment:
Q  20 gaacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaaggaacata 95  Q
    |||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||    
T  10861482 gaacatctttgtctaatgttgactacttaatagttaacactaatttatatcgaaaacaaacagcagaagaaacata 10861557  T

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Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 3046447 - 3046507
Alignment:
Q  21 aacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaaca 81  Q
    |||| |||| ||||||||||||||||||| | ||| |||||||||||||| ||||||||||    
T  3046447 aacacctttgtctaatgttgactacttaatatttaacactaatttatatcaaaaacaaaca 3046507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 25041742 - 25041643
Alignment:
Q  20 gaacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaaggaacataacattagagagaagagaaacagag 119  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  25041742 gaacatctttgtctaatgttgactacttaacagttaacactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 25041643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 959237 - 959139
Alignment:
Q  21 aacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaaggaacataacattagagagaagagaaacagag 119  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  959237 aacatctttgtctaatgttgactacttaacggttatcactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 959139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 39580296 - 39580200
Alignment:
Q  20 gaacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaaggaacataacattagagagaagagaaaca 116  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  39580296 gaacatctttgtctaatgttgactacttaacagttaacactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaaca 39580200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 21 - 116
Target Start/End: Complemental strand, 21869256 - 21869161
Alignment:
Q  21 aacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaaggaacataacattagagagaagagaaaca 116  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  21869256 aacatctttgtctaatgttgactacttaacagttaacactaatttatattgaaaacaaacagcagaagaaacataacattagagagaagagaaaca 21869161  T

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Target: chr3; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 4533873 - 4533774
Alignment:
Q  20 gaacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaaggaacataacattagagagaagagaaacagag 119  Q
    |||||||||| |||||||||||||| |||||||||| || ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  4533873 gaacatctttgtctaatgttgactaattaacagttaacaataatttatatcgaaaacaaacagcaaaagaaacataacattagagagaagagaaacagag 4533774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 42864669 - 42864577
Alignment:
Q  20 gaacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaaggaacataacattagagagaagagaaaca 116  Q
    |||||||||| ||||||| |||||||||||||    ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  42864669 gaacatctttgtctaatggtgactacttaaca----tcagtaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaaca 42864577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 68 - 115
Target Start/End: Complemental strand, 39674532 - 39674485
Alignment:
Q  68 atcgaaaacaaacagcagaaggaacataacattagagagaagagaaac 115  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  39674532 atcgaaaacaaacagcagaagaaacataacattagagagaagagaaac 39674485  T

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Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 22976432 - 22976493
Alignment:
Q  21 aacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacag 82  Q
    |||| |||| ||||||||||||||||||| ||||| ||||||||||||||||||| ||||||    
T  22976432 aacacctttgtctaatgttgactacttaatagttaacactaatttatatcgaaaataaacag 22976493  T

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Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 77 - 119
Target Start/End: Original strand, 53330421 - 53330463
Alignment:
Q  77 aaacagcagaaggaacataacattagagagaagagaaacagag 119  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  53330421 aaacagcagaagaaacataacattagagagaagagaaacagag 53330463  T

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Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 77 - 119
Target Start/End: Original strand, 53334105 - 53334147
Alignment:
Q  77 aaacagcagaaggaacataacattagagagaagagaaacagag 119  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  53334105 aaacagcagaagaaacataacattagagagaagagaaacagag 53334147  T

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Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 77 - 119
Target Start/End: Original strand, 53337782 - 53337824
Alignment:
Q  77 aaacagcagaaggaacataacattagagagaagagaaacagag 119  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  53337782 aaacagcagaagaaacataacattagagagaagagaaacagag 53337824  T

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Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 82
Target Start/End: Complemental strand, 29360129 - 29360074
Alignment:
Q  27 tttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacag 82  Q
    ||||||||||||||||| ||| | ||||| |||||||||| |||||||||||||||    
T  29360129 tttatctaatgttgactgcttgatagttaacactaatttagatcgaaaacaaacag 29360074  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 116
Target Start/End: Complemental strand, 29360047 - 29360014
Alignment:
Q  83 cagaaggaacataacattagagagaagagaaaca 116  Q
    |||||| |||||||||||||||||||||||||||    
T  29360047 cagaagaaacataacattagagagaagagaaaca 29360014  T

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Target: scaffold0017 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 20 - 119
Target Start/End: Original strand, 37725 - 37824
Alignment:
Q  20 gaacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaaggaacataacattagagagaagagaaacagag 119  Q
    |||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  37725 gaacatctttgtctaatgttgactacttaacagttaacacaaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 37824  T

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Target: chr4 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 54260528 - 54260429
Alignment:
Q  20 gaacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaaggaacataacattagagagaagagaaacagag 119  Q
    |||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  54260528 gaacatctttgtctaatgttgactacttaatagttaacactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 54260429  T

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Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 21112490 - 21112392
Alignment:
Q  21 aacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaaggaacataacattagagagaagagaaacagag 119  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  21112490 aacatctttgtctaatgttgactacttaacagttaacactaatttatatcaaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 21112392  T

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Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 8862433 - 8862334
Alignment:
Q  20 gaacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaaggaacataacattagagagaagagaaacagag 119  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||    
T  8862433 gaacatctttgtctaatgttgaccacttaacagttatcactaatttatatcgaaaacaaacagtagaagaaacataacattatagagaagagaaacagag 8862334  T

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Target: chr5 (Bit Score: 81; Significance: 4e-38; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 8871647 - 8871551
Alignment:
Q  20 gaacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaaggaacataacattagagagaagagaaaca 116  Q
    |||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8871647 gaacatttttgtctaatgttgactacttaacagttaacactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaaca 8871551  T

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Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 20 - 119
Target Start/End: Original strand, 13854368 - 13854466
Alignment:
Q  20 gaacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaaggaacataacattagagagaagagaaacagag 119  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||    
T  13854368 gaacatctttgtctaatgttgactacttaacagttaacactaatttatatcg-aaacaaatagcagaagaaacataacattagagagaagagaaacagag 13854466  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 36606541 - 36606474
Alignment:
Q  20 gaacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaa 87  Q
    |||||||||| |||||||||||||||||||||||||  ||||||||||||  ||||||||||| ||||    
T  36606541 gaacatctttgtctaatgttgactacttaacagttaatactaatttatattaaaaacaaacagtagaa 36606474  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 6666094 - 6666038
Alignment:
Q  26 ctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacag 82  Q
    |||| ||||||||||||||||||  ||||| ||||||||||||||||||||||||||    
T  6666094 ctttgtctaatgttgactacttactagttaacactaatttatatcgaaaacaaacag 6666038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 32659313 - 32659267
Alignment:
Q  20 gaacatctttatctaatgttgactacttaacagttatcactaattta 66  Q
    ||||| |||| ||||||||||||||||||| ||||| ||||||||||    
T  32659313 gaacacctttgtctaatgttgactacttaatagttaacactaattta 32659267  T

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Target: chr1 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 23 - 117
Target Start/End: Original strand, 46397774 - 46397868
Alignment:
Q  23 catctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaaggaacataacattagagagaagagaaacag 117  Q
    ||||||| ||||||||||| ||||||| ||||| || |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  46397774 catctttgtctaatgttgattacttaatagttaacaataatttatatcgaaaacaaacaacagaagaaacataacattagagagaagagaaacag 46397868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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