View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6854_low_36 (Length: 309)

Name: NF6854_low_36
Description: NF6854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6854_low_36
NF6854_low_36
[»] chr5 (4 HSPs)
chr5 (1-194)||(34767487-34767680)
chr5 (186-303)||(34767193-34767310)
chr5 (253-290)||(35156422-35156459)
chr5 (257-294)||(16193117-16193154)
[»] chr6 (1 HSPs)
chr6 (258-295)||(12329287-12329324)
[»] chr1 (2 HSPs)
chr1 (253-302)||(51046148-51046197)
chr1 (253-293)||(11410633-11410673)
[»] chr4 (5 HSPs)
chr4 (253-296)||(50668346-50668389)
chr4 (257-292)||(2448159-2448194)
chr4 (238-295)||(38340333-38340387)
chr4 (258-296)||(42773063-42773101)
chr4 (253-303)||(50380841-50380891)
[»] chr2 (3 HSPs)
chr2 (251-301)||(1707742-1707792)
chr2 (258-303)||(19212969-19213014)
chr2 (253-293)||(37265184-37265224)
[»] chr7 (2 HSPs)
chr7 (253-290)||(2450586-2450623)
chr7 (266-303)||(9893085-9893122)


Alignment Details
Target: chr5 (Bit Score: 166; Significance: 7e-89; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 34767680 - 34767487
Alignment:
Q  1 tgcttctccccaatatgaattcgtgaaataaatttgaaaagagaaagaattgggcaatttcaagaagtgataattgttcctttatgcaaccttattttat 100  Q
    |||||||||||| ||||| ||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34767680 tgcttctccccattatgagttcgtgacatatatttgaaaagagaatgaattgggcaatttcaagaagtgataattgttcctttatgcaaccttattttat 34767581  T
Q  101 cgtaggtgtcgcctcttgtaaattcacatgatgttctgtactattaaagtttcaagaagtgacatattcattttcattgtcatgatataatcta 194  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34767580 cgtaggtatcgcctcttgtaaattcacatgatgttatgtactattaaagtttcaagaagtgacatattcattttcattgtcatgatataatcta 34767487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 186 - 303
Target Start/End: Complemental strand, 34767310 - 34767193
Alignment:
Q  186 tataatctataaaagggatataaggttgcgttatggtagaggccgtgggagagtcctcgtgagcttattaattcagttgttatgaacaatacataaaata 285  Q
    ||||||||||||||||||||||||||||  || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34767310 tataatctataaaagggatataaggttgaattgtggtagaggccgtgggaaagtcctcgtgagcttattaattcagttgttatgaacaatacataaaata 34767211  T
Q  286 tgtaaggttcgaagttca 303  Q
    |||||||| |||||||||    
T  34767210 tgtaaggtccgaagttca 34767193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 253 - 290
Target Start/End: Complemental strand, 35156459 - 35156422
Alignment:
Q  253 ttaattcagttgttatgaacaatacataaaatatgtaa 290  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  35156459 ttaattcagttgttatgaacaatacttaaaatatgtaa 35156422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 294
Target Start/End: Original strand, 16193117 - 16193154
Alignment:
Q  257 ttcagttgttatgaacaatacataaaatatgtaaggtt 294  Q
    |||||||| |||||||||| ||||||||||||||||||    
T  16193117 ttcagttggtatgaacaatgcataaaatatgtaaggtt 16193154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 258 - 295
Target Start/End: Original strand, 12329287 - 12329324
Alignment:
Q  258 tcagttgttatgaacaatacataaaatatgtaaggttc 295  Q
    ||||||||||||||||||||||||||||||||||||||    
T  12329287 tcagttgttatgaacaatacataaaatatgtaaggttc 12329324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 302
Target Start/End: Original strand, 51046148 - 51046197
Alignment:
Q  253 ttaattcagttgttatgaacaatacataaaatatgtaaggttcgaagttc 302  Q
    |||| ||||||| ||||||||||||||||||||||||||||||| |||||    
T  51046148 ttaactcagttggtatgaacaatacataaaatatgtaaggttcggagttc 51046197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 293
Target Start/End: Original strand, 11410633 - 11410673
Alignment:
Q  253 ttaattcagttgttatgaacaatacataaaatatgtaaggt 293  Q
    |||| ||||||| ||||||||||||||||||||||||||||    
T  11410633 ttaactcagttggtatgaacaatacataaaatatgtaaggt 11410673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 296
Target Start/End: Original strand, 50668346 - 50668389
Alignment:
Q  253 ttaattcagttgttatgaacaatacataaaatatgtaaggttcg 296  Q
    |||||||||||| |||||||||||||||| ||||||||||||||    
T  50668346 ttaattcagttggtatgaacaatacataatatatgtaaggttcg 50668389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 2448159 - 2448194
Alignment:
Q  257 ttcagttgttatgaacaatacataaaatatgtaagg 292  Q
    |||||||| |||||||||||||||||||||||||||    
T  2448159 ttcagttggtatgaacaatacataaaatatgtaagg 2448194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 238 - 295
Target Start/End: Complemental strand, 38340387 - 38340333
Alignment:
Q  238 gtcctcgtgagcttattaattcagttgttatgaacaatacataaaatatgtaaggttc 295  Q
    |||||||||||||||   | ||||||| |||| |||||||||||||||||||||||||    
T  38340387 gtcctcgtgagctta---actcagttggtatggacaatacataaaatatgtaaggttc 38340333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 296
Target Start/End: Original strand, 42773063 - 42773101
Alignment:
Q  258 tcagttgttatgaacaatacataaaatatgtaaggttcg 296  Q
    ||||||| |||| ||||||||||||||||||||||||||    
T  42773063 tcagttgatatggacaatacataaaatatgtaaggttcg 42773101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 303
Target Start/End: Complemental strand, 50380891 - 50380841
Alignment:
Q  253 ttaattcagttgttatgaacaatacataaaatatgtaaggttcgaagttca 303  Q
    |||||||||||| |||||||||| ||||| ||||||||||| || ||||||    
T  50380891 ttaattcagttggtatgaacaatgcataatatatgtaaggtccggagttca 50380841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 301
Target Start/End: Original strand, 1707742 - 1707792
Alignment:
Q  251 tattaattcagttgttatgaacaatacataaaatatgtaaggttcgaagtt 301  Q
    |||||||||||||  |||  ||||||||||||||||||||||| |||||||    
T  1707742 tattaattcagttagtatagacaatacataaaatatgtaaggtccgaagtt 1707792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 303
Target Start/End: Original strand, 19212969 - 19213014
Alignment:
Q  258 tcagttgttatgaacaatacataaaatatgtaaggttcgaagttca 303  Q
    ||||||||| || ||||||||||| ||||| |||||||||||||||    
T  19212969 tcagttgttttggacaatacataatatatgcaaggttcgaagttca 19213014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 293
Target Start/End: Complemental strand, 37265224 - 37265184
Alignment:
Q  253 ttaattcagttgttatgaacaatacataaaatatgtaaggt 293  Q
    |||||||||||| || | |||||||||||||||||||||||    
T  37265224 ttaattcagttgataaggacaatacataaaatatgtaaggt 37265184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 290
Target Start/End: Original strand, 2450586 - 2450623
Alignment:
Q  253 ttaattcagttgttatgaacaatacataaaatatgtaa 290  Q
    |||| ||||||| |||||||||||||||||||||||||    
T  2450586 ttaactcagttggtatgaacaatacataaaatatgtaa 2450623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 303
Target Start/End: Complemental strand, 9893122 - 9893085
Alignment:
Q  266 tatgaacaatacataaaatatgtaaggttcgaagttca 303  Q
    |||| ||||||||||||||||| |||||||||||||||    
T  9893122 tatggacaatacataaaatatgcaaggttcgaagttca 9893085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University