View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6854_low_37 (Length: 303)
Name: NF6854_low_37
Description: NF6854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6854_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 34424945 - 34424785
Alignment:
| Q |
18 |
cattttattgatccgcttttccattgaatgttgtgaggtaatgtgactctaaatcctttcataaataaataaaaaatgtgactctaaatcccataacatt |
117 |
Q |
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| T |
34424945 |
cattttattgatccgcttttccattgaatgttgggaggtaatgtgactctaaatcctttcataaataaataaaaaatgtgactctaaatcccataacatt |
34424846 |
T |
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| Q |
118 |
cctgttttt--cttcttcttattcctactgactagttgtgttcgaaatgcacattccagac |
176 |
Q |
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| T |
34424845 |
ccttttttttctttcttcttattcctactgactagttgtgttcgaaatgcacattccagac |
34424785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 227
Target Start/End: Original strand, 8503932 - 8503974
Alignment:
| Q |
185 |
gaaatggcaaatttattctcgacgagtaaatgcaaggtgcata |
227 |
Q |
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| T |
8503932 |
gaaatggcaaatttattctcgtcgagtaaatgcaaggcgcata |
8503974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 14047367 - 14047416
Alignment:
| Q |
186 |
aaatggcaaatttattctcgacgagtaaatgcaaggtgcatacaaactcg |
235 |
Q |
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| T |
14047367 |
aaatgacaaatttattctcgacgagtaaatgcaaagcgcataaaaactcg |
14047416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 242
Target Start/End: Original strand, 31034318 - 31034375
Alignment:
| Q |
185 |
gaaatggcaaatttattctcgacgagtaaatgcaaggtgcatacaaactcgcggaaaa |
242 |
Q |
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| T |
31034318 |
gaaatggtaaatttattctcgtcgagtaaatgcaagacgcataaacactcgcggaaaa |
31034375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 44464129 - 44464094
Alignment:
| Q |
185 |
gaaatggcaaatttattctcgacgagtaaatgcaag |
220 |
Q |
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| T |
44464129 |
gaaatggcaaatttattctcgacgagtaagtgcaag |
44464094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 35443290 - 35443325
Alignment:
| Q |
185 |
gaaatggcaaatttattctcgacgagtaaatgcaag |
220 |
Q |
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| T |
35443290 |
gaaatggcaaatttattctcgtcgagtaaatgcaag |
35443325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 238
Target Start/End: Complemental strand, 11156010 - 11155965
Alignment:
| Q |
193 |
aaatttattctcgacgagtaaatgcaaggtgcatacaaactcgcgg |
238 |
Q |
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| T |
11156010 |
aaatttattcacgtcgagtaaatgcaaggcgcataaaaactcgcgg |
11155965 |
T |
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