View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6854_low_43 (Length: 242)
Name: NF6854_low_43
Description: NF6854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6854_low_43 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 20 - 242
Target Start/End: Complemental strand, 22506997 - 22506775
Alignment:
| Q |
20 |
ctatcttcctgctgcttgcggttgttagccagtttgattcaacaccattttcctttccgactgagcataaatcacgtcatcaaattgagtccatcctgct |
119 |
Q |
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| T |
22506997 |
ctatcttcctgctgcttgcggttgttagccagtttgattcaacaccattttcctttccgactgagcataaatcacgtcatcaaattgagtccatcctgct |
22506898 |
T |
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| Q |
120 |
gtcattttcacgttcgaaattaagtaatttatctgaacttgattagtttcgacctaattacattatcatctgatagacacctccacactaacttaaaaga |
219 |
Q |
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| T |
22506897 |
gtcattttcacgttcgaaattaagcaatttatctgaacttgattagtttcgacctaattacattatcatctgatagacacctccacactaacttaaaaga |
22506798 |
T |
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| Q |
220 |
gataaatttctccaagaccacct |
242 |
Q |
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| T |
22506797 |
gataaatttctcgaagaccacct |
22506775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 186
Target Start/End: Original strand, 10537457 - 10537491
Alignment:
| Q |
152 |
ctgaacttgattagtttcgacctaattacattatc |
186 |
Q |
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| T |
10537457 |
ctgaacttgattagtttcgaccaaattacattatc |
10537491 |
T |
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