View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6854_low_44 (Length: 241)
Name: NF6854_low_44
Description: NF6854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6854_low_44 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 141; Significance: 5e-74; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 22 - 222
Target Start/End: Complemental strand, 2930632 - 2930432
Alignment:
| Q |
22 |
ttcctgttattgatcaaaaattttatggggagaagattttctcttacaaagatgaactgaggcaaatcggggtggtggttgattttagaaatgctataaa |
121 |
Q |
| |
|
|||||||||||||||| || |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
2930632 |
ttcctgttattgatcataacttttatggggcgaagattttctcttacaaagacgaactgaggcaaatcggggtggtggttgattatggaaatgctataaa |
2930533 |
T |
|
| Q |
122 |
aaagtttgcaagtctattagaacgaaaggcattggaaacttcaattagccaaaaacatgttatctcatttctcaaatgtttcagacagctgaagggatct |
221 |
Q |
| |
|
||||||| ||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||| |||||| |||| ||| |
|
|
| T |
2930532 |
aaagttttcaagtctctttgaacgaaaggcattggaaacttcaattaaccaaaaacatgttatctcatttctaaaatgttgcaggcagctggaggggtct |
2930433 |
T |
|
| Q |
222 |
t |
222 |
Q |
| |
|
| |
|
|
| T |
2930432 |
t |
2930432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 3012117 - 3012334
Alignment:
| Q |
1 |
ttttagaggtattaaatggtattcctgttattgatcaaaaattttatggggagaagattttctcttacaaagatgaactgaggcaaatcggggtggtggt |
100 |
Q |
| |
|
|||| |||||||| |||||| | |||||||||||||| |||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
3012117 |
ttttggaggtattcaatggtctccctgttattgatcataaattttacgggcagaagattttctcttttaaagatgaactgaggcaaatcggggtggtggt |
3012216 |
T |
|
| Q |
101 |
tgattttagaaatgctataaaaaagtttgcaagtctattagaacgaaaggcattggaaacttcaattagccaaaaacatgttatctcatttctcaaatgt |
200 |
Q |
| |
|
||||||| |||||||||| ||||| ||||| ||||| || |||| |||||||| ||| ||||||||| |||| ||||||| || ||||||||||| ||| |
|
|
| T |
3012217 |
tgattttggaaatgctatcaaaaaatttgctagtctgtttgaacaaaaggcatcagaagcttcaattaaccaacaacatgtcatgtcatttctcaattgt |
3012316 |
T |
|
| Q |
201 |
ttcagacagctgaaggga |
218 |
Q |
| |
|
| ||| | |||| ||||| |
|
|
| T |
3012317 |
tgcaggctgctggaggga |
3012334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 2947300 - 2947107
Alignment:
| Q |
1 |
ttttagaggtattaaatggtattcctgttattgatcaaaaattttatggggagaagattttctcttacaaagatgaactgaggcaaatcggggtggtggt |
100 |
Q |
| |
|
|||| |||||||| |||||||||||| ||||||| || ||||||||||| |||||||||||| ||||||||||||| | | |||||| |||||| |||| |
|
|
| T |
2947300 |
ttttggaggtattcaatggtattcctattattgaccataaattttatggagagaagattttcagttacaaagatgaattaaagcaaataggggtgctggt |
2947201 |
T |
|
| Q |
101 |
tgattttagaaatgctataaaaaagtttgcaagtctattagaacgaaaggcattggaaacttcaattagccaaaaacatgttatctcatttctc |
194 |
Q |
| |
|
|||||| | |||| ||| | ||||| |||||||| ||| |||||||| ||||| ||||||| || || ||||||||||||||||||| |
|
|
| T |
2947200 |
tgatttcaaggatgccgcaaatatttttgctagtctattcaaacaaaaggcatcagaaacctcaattaacccaacacatgttatctcatttctc |
2947107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 130
Target Start/End: Complemental strand, 2921254 - 2921146
Alignment:
| Q |
22 |
ttcctgttattgatcaaaaattttatggggagaagattttctcttacaaagatgaactgaggcaaatcggggtggtggttgattttagaaatgctataaa |
121 |
Q |
| |
|
||||||| ||||| || ||||||||||| |||||||||||| ||||||||||||||||||| |||| || | ||||||||||||| || ||||||| || |
|
|
| T |
2921254 |
ttcctgtgattgaccataaattttatggagagaagattttcgattacaaagatgaactgaggaaaataggtgcggtggttgattttggagatgctatcaa |
2921155 |
T |
|
| Q |
122 |
aaagtttgc |
130 |
Q |
| |
|
||| ||||| |
|
|
| T |
2921154 |
aaaatttgc |
2921146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 118
Target Start/End: Complemental strand, 37796136 - 37796040
Alignment:
| Q |
22 |
ttcctgttattgatcaaaaattttatggggagaagattttctcttacaaagatgaactgaggcaaatcggggtggtggttgattttagaaatgctat |
118 |
Q |
| |
|
||||||| |||||||| ||||| ||||| || || ||||||||||||||| ||||||||| ||||||| || || ||||||||| || ||||||| |
|
|
| T |
37796136 |
ttcctgtgattgatcataaattctatggagataatattttctcttacaaaaatgaactgaaaaaaatcggtgtagttgttgattttggagatgctat |
37796040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 1506429 - 1506622
Alignment:
| Q |
1 |
ttttagaggtattaaatggtattcctgttattgatcaaaaattttatggggagaagattttctcttacaaagatgaactgaggcaaatcggggtggtggt |
100 |
Q |
| |
|
|||||||||| || ||||| |||||||||||||||| |||||||||||||||| |||||| ||||||||||||| ||| |||| | |||||| |||| |
|
|
| T |
1506429 |
ttttagaggtgttcgatggtcttcctgttattgatcatgaattttatggggagaaaattttcagttacaaagatgaattgatgcaagtaggggtgctggt |
1506528 |
T |
|
| Q |
101 |
tgattttagaaatgctataaaaaagtttgcaagtctattagaacgaaaggcattggaaacttcaattagccaaaaacatgttatctcatttctc |
194 |
Q |
| |
|
|||||||| |||| || ||||| ||| ||| ||||| |||| |||||||||||||| |||||||| | | ||||||| |||||||||||| |
|
|
| T |
1506529 |
tgattttaaggatgccatcaaaaaaattgaaaggctatttgaacaaaaggcattggaaaattcaattaacggacaacatgtcatctcatttctc |
1506622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 28025144 - 28025023
Alignment:
| Q |
9 |
gtattaaatggtattcctgttattgatcaaaaattttatggggagaagattttctcttacaaagatgaactgaggcaaatcggggtggtggttgatttta |
108 |
Q |
| |
|
||||| ||||| ||||||| |||||||| ||||| ||||| || || ||||||||||||||| ||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
28025144 |
gtattcaatggccttcctgtgattgatcataaattctatggagataatattttctcttacaaaaatgaactgaagcaaatcggtgtggtggttgattttg |
28025045 |
T |
|
| Q |
109 |
gaaatgctataaaaaagtttgc |
130 |
Q |
| |
|
| ||||||||||||| ||||| |
|
|
| T |
28025044 |
aagatgctataaaaaaatttgc |
28025023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University