View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6854_low_46 (Length: 236)

Name: NF6854_low_46
Description: NF6854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6854_low_46
NF6854_low_46
[»] chr1 (16 HSPs)
chr1 (5-105)||(4073540-4073639)
chr1 (5-108)||(50709560-50709660)
chr1 (5-107)||(46594217-46594316)
chr1 (5-109)||(22791081-22791181)
chr1 (8-105)||(31183482-31183577)
chr1 (5-103)||(50461197-50461293)
chr1 (23-109)||(2136818-2136903)
chr1 (23-107)||(29488274-29488357)
chr1 (56-105)||(30902400-30902449)
chr1 (59-107)||(781883-781931)
chr1 (48-107)||(270965-271024)
chr1 (44-107)||(13558515-13558578)
chr1 (44-99)||(16122830-16122885)
chr1 (24-91)||(38682929-38682995)
chr1 (61-106)||(13643849-13643894)
chr1 (56-105)||(17936244-17936292)
[»] chr3 (13 HSPs)
chr3 (7-109)||(24611452-24611552)
chr3 (5-108)||(43471806-43471906)
chr3 (23-109)||(24121094-24121180)
chr3 (23-109)||(1341680-1341765)
chr3 (5-107)||(47014295-47014394)
chr3 (1-85)||(21842589-21842671)
chr3 (1-85)||(21858232-21858314)
chr3 (5-105)||(31489516-31489613)
chr3 (5-109)||(50387219-50387315)
chr3 (24-107)||(20619294-20619376)
chr3 (44-107)||(45472632-45472695)
chr3 (6-65)||(2111477-2111534)
chr3 (44-107)||(38489753-38489816)
[»] chr8 (7 HSPs)
chr8 (5-109)||(14180078-14180179)
chr8 (24-109)||(9136736-9136820)
chr8 (9-109)||(37231806-37231904)
chr8 (42-107)||(12006746-12006811)
chr8 (44-107)||(18928588-18928651)
chr8 (44-85)||(17748925-17748966)
chr8 (25-73)||(2813782-2813829)
[»] chr6 (6 HSPs)
chr6 (5-109)||(6724465-6724568)
chr6 (5-109)||(17533413-17533513)
chr6 (42-109)||(7495028-7495095)
chr6 (9-104)||(16109907-16110000)
chr6 (44-85)||(2988155-2988196)
chr6 (44-108)||(8485974-8486037)
[»] chr5 (8 HSPs)
chr5 (5-109)||(7732251-7732353)
chr5 (5-109)||(42990714-42990815)
chr5 (5-109)||(12118342-12118444)
chr5 (61-109)||(41634422-41634470)
chr5 (44-85)||(26565010-26565051)
chr5 (44-107)||(5836542-5836605)
chr5 (2-105)||(27972024-27972125)
chr5 (71-107)||(12848496-12848532)
[»] chr2 (12 HSPs)
chr2 (5-105)||(26352625-26352723)
chr2 (5-109)||(43355729-43355830)
chr2 (9-107)||(3353146-3353242)
chr2 (9-91)||(36925582-36925662)
chr2 (23-109)||(45388776-45388861)
chr2 (9-109)||(18858498-18858596)
chr2 (44-107)||(16496821-16496884)
chr2 (24-107)||(37272917-37272999)
chr2 (44-107)||(38221640-38221703)
chr2 (44-107)||(41323922-41323985)
chr2 (44-86)||(40498675-40498717)
chr2 (45-85)||(38140641-38140681)
[»] chr4 (7 HSPs)
chr4 (5-107)||(44746443-44746543)
chr4 (5-109)||(43770555-43770657)
chr4 (23-109)||(22198879-22198964)
chr4 (5-109)||(34075145-34075246)
chr4 (23-105)||(21619592-21619674)
chr4 (44-107)||(53586434-53586497)
chr4 (56-107)||(10037902-10037953)
[»] chr7 (9 HSPs)
chr7 (5-109)||(48138530-48138631)
chr7 (1-109)||(44798181-44798287)
chr7 (41-109)||(46192301-46192369)
chr7 (23-109)||(31397197-31397282)
chr7 (5-78)||(24699810-24699880)
chr7 (28-104)||(16817877-16817950)
chr7 (60-107)||(2483800-2483847)
chr7 (41-85)||(25482627-25482671)
chr7 (58-91)||(3094258-3094291)
[»] scaffold0001 (1 HSPs)
scaffold0001 (23-85)||(394217-394278)


Alignment Details
Target: chr1 (Bit Score: 77; Significance: 7e-36; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 5 - 105
Target Start/End: Original strand, 4073540 - 4073639
Alignment:
Q  5 atccaccaaaaacagaattttttaattggttaatcggaaaaacaattatagtgattcatatcttaaattgaatcatatacaactccattgaattttcaca 104  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||    
T  4073540 atccaccaaaaacataattttttaattggttaatcg-aaaaacaattatagtgattcatatcttaaattgaatcatacacatcgccattgaattttcaca 4073638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 108
Target Start/End: Complemental strand, 50709660 - 50709560
Alignment:
Q  5 atccaccaaaaacagaattttttaattggttaatcggaaaaacaattatagtgattcatatcttaaattgaatcatatacaactccattgaattttcaca 104  Q
    |||||||||||||| ||||||| ||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  50709660 atccaccaaaaacataattttt-aattggtta-tcg-aaaaacaattataatgattcatatcttaaattgaatcatatacatctccattgaattttcaca 50709564  T
Q  105 acac 108  Q
    ||||    
T  50709563 acac 50709560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 46594217 - 46594316
Alignment:
Q  5 atccaccaaaaacagaattttttaattggttaatcggaaaaacaattatagtgattcatatcttaaattgaatcatatacaactccattgaattttcaca 104  Q
    |||||||||||||| ||||||| ||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  46594217 atccaccaaaaacataattttt-aattggtca-tcg-aaaaacaattatagtgattcatatcttaaattgaatcatatacatctccattgaattttcaca 46594313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 5 - 109
Target Start/End: Original strand, 22791081 - 22791181
Alignment:
Q  5 atccaccaaaaacagaattttttaattggttaatcggaaaaacaattatagtgattcatatcttaaattgaatcatatacaactccattgaattttcaca 104  Q
    |||||||||||||| ||||||| ||||||||| |||  ||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  22791081 atccaccaaaaacataattttt-aattggtta-tcg--aaaacaattgtagtgattcatatcttaaattgaatcatatacatatccattgaattttcaca 22791176  T
Q  105 acaca 109  Q
    |||||    
T  22791177 acaca 22791181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 31183577 - 31183482
Alignment:
Q  8 caccaaaaacagaattttttaattggttaatcggaaaaacaattatagtgattcatatcttaaattgaatcatatacaactccattgaattttcacaa 105  Q
    ||||||||||| ||||||| ||||||||||||| |||| ||||||||||||||||||||| ||||||||| |||||||  ||||||||||||||||||    
T  31183577 caccaaaaacataattttt-aattggttaatcg-aaaagcaattatagtgattcatatctcaaattgaattatatacatatccattgaattttcacaa 31183482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 103
Target Start/End: Original strand, 50461197 - 50461293
Alignment:
Q  5 atccaccaaaaacagaattttttaattggttaatcggaaaaacaattatagtgattcatatcttaaattgaatcatatacaactccattgaattttcac 103  Q
    |||||| ||||||| ||||||| | ||||||||||| |||||||||||||  |||||||||||||||||||| |||||||| ||| |||||||||||||    
T  50461197 atccacaaaaaacataattttt-atttggttaatcg-aaaaacaattatatcgattcatatcttaaattgaaccatatacatctctattgaattttcac 50461293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 2136903 - 2136818
Alignment:
Q  23 tttttaattggttaatcggaaaaacaattatagtgattcatatcttaaattgaatcatatacaactccattgaattttcacaacaca 109  Q
    |||||||||||||||||| |||| ||||| | ||||||||||| ||||||||||| ||||| |  ||||||||||||||||||||||    
T  2136903 tttttaattggttaatcgtaaaa-caattgtggtgattcatatattaaattgaattatatatacttccattgaattttcacaacaca 2136818  T

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Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 107
Target Start/End: Complemental strand, 29488357 - 29488274
Alignment:
Q  23 tttttaattggttaatcggaaaaacaattatagtgattcatatcttaaattgaatcatatacaactccattgaattttcacaaca 107  Q
    |||||||||||||||||  ||| ||||||| | |||| ||||||||||| | ||||||||||| ||||| | |||||||||||||    
T  29488357 tttttaattggttaatca-aaatacaattacaatgatacatatcttaaacttaatcatatacatctccactaaattttcacaaca 29488274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 30902400 - 30902449
Alignment:
Q  56 tgattcatatcttaaattgaatcatatacaactccattgaattttcacaa 105  Q
    |||| ||||| | ||||||||||||||||| |||||||||||||||||||    
T  30902400 tgatgcatatttaaaattgaatcatatacatctccattgaattttcacaa 30902449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 781931 - 781883
Alignment:
Q  59 ttcatatcttaaattgaatcatatacaactccattgaattttcacaaca 107  Q
    ||||||||| |||||||||||||||||  | ||||||||||||||||||    
T  781931 ttcatatctaaaattgaatcatatacatattcattgaattttcacaaca 781883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 107
Target Start/End: Complemental strand, 271024 - 270965
Alignment:
Q  48 aattatagtgattcatatcttaaattgaatcatatacaactccattgaattttcacaaca 107  Q
    ||||||| ||||  |||||| ||||||||||||||| | |||||| ||||||||||||||    
T  271024 aattatactgatgtatatctaaaattgaatcatatatatctccatcgaattttcacaaca 270965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 107
Target Start/End: Complemental strand, 13558578 - 13558515
Alignment:
Q  44 aaacaattatagtgattcatatcttaaattgaatcatatacaactccattgaattttcacaaca 107  Q
    |||||||| ||||||| ||||||| ||||||||||||||||| | | ||||||| || ||||||    
T  13558578 aaacaattttagtgatgcatatctaaaattgaatcatatacatccctattgaatgtttacaaca 13558515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 99
Target Start/End: Complemental strand, 16122885 - 16122830
Alignment:
Q  44 aaacaattatagtgattcatatcttaaattgaatcatatacaactccattgaattt 99  Q
    ||||||||||| |||| ||||||| |||||||||||||||||  |||| |||||||    
T  16122885 aaacaattatactgatgcatatctaaaattgaatcatatacatttccaatgaattt 16122830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 38682929 - 38682995
Alignment:
Q  24 ttttaattggttaatcggaaaaacaattatagtgattcatatcttaaattgaatcatatacaactcca 91  Q
    |||||| |||||||||| | |||||||| || |||| ||||||| ||||||||||||||||| |||||    
T  38682929 ttttaagtggttaatcg-agaaacaattctattgatgcatatctaaaattgaatcatatacatctcca 38682995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 106
Target Start/End: Complemental strand, 13643894 - 13643849
Alignment:
Q  61 catatcttaaattgaatcatatacaactccattgaattttcacaac 106  Q
    ||||||| ||||||||||||||||| ||| |||||||||| |||||    
T  13643894 catatctaaaattgaatcatatacatctctattgaatttttacaac 13643849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 17936244 - 17936292
Alignment:
Q  56 tgattcatatcttaaattgaatcatatacaactccattgaattttcacaa 105  Q
    ||||||||||| || ||||| ||||||||| |||||||||||||||||||    
T  17936244 tgattcatatcatatattga-tcatatacatctccattgaattttcacaa 17936292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 7 - 109
Target Start/End: Original strand, 24611452 - 24611552
Alignment:
Q  7 ccaccaaaaacagaattttttaattggttaatcggaaaaacaattatagtgattcatatcttaaattgaatcatatacaactccattgaattttcacaac 106  Q
    |||||||||||| ||||||| ||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||    
T  24611452 ccaccaaaaacataattttt-aattggttaattg-aaaaacaattatagtgattcatatattaaattgaatcatatacatctccattgatttttcacaac 24611549  T
Q  107 aca 109  Q
    |||    
T  24611550 aca 24611552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 108
Target Start/End: Complemental strand, 43471906 - 43471806
Alignment:
Q  5 atccaccaaaaacagaattttttaattggttaatcggaaaaacaattatagtgattcatatcttaaattgaatcatatacaactccattgaattttcaca 104  Q
    ||||| |||||||| ||||||| ||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  43471906 atccaacaaaaacataattttt-aattggtta-tcg-aaaaacagttatagtgattcatatcttaaattgaatcatatacatctcaattgaattttcaca 43471810  T
Q  105 acac 108  Q
    ||||    
T  43471809 acac 43471806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 24121180 - 24121094
Alignment:
Q  23 tttttaattggttaatcggaaaaacaattatagtgattcatatcttaaattgaatcatatacaactccattgaattttcacaacaca 109  Q
    |||||||||||||||   |||||||||||| |||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||    
T  24121180 tttttaattggttaaagcgaaaaacaattacagtgattcatatcttaaattgaatcaaatacacctccattgatttttcacaacaca 24121094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 109
Target Start/End: Original strand, 1341680 - 1341765
Alignment:
Q  23 tttttaattggttaatcggaaaaacaattatagtgattcatatcttaaattgaatcatatacaactccattgaattttcacaacaca 109  Q
    ||||||||| |||||||| ||||||||||||| |||||||||||||||| |||||||||| || ||| |||||||||||||||||||    
T  1341680 tttttaattagttaatcg-aaaaacaattataatgattcatatcttaaaatgaatcatatgcatctctattgaattttcacaacaca 1341765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 47014394 - 47014295
Alignment:
Q  5 atccaccaaaaacagaattttttaattggttaatcggaaaaacaattatagtgattcatatcttaaattgaatcatatacaactccattgaattttcaca 104  Q
    ||||||| |||||| ||||||| ||||||||||||| ||||||||||||| ||||| |||||| ||||||||||||||||| || |||||||||||||||    
T  47014394 atccacccaaaacataattttt-aattggttaatcg-aaaaacaattataatgatttatatct-aaattgaatcatatacatcttcattgaattttcaca 47014298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 21842671 - 21842589
Alignment:
Q  1 ttttatccaccaaaaacagaattttttaattggttaatcggaaaaacaattatagtgattcatatcttaaattgaatcatataca 85  Q
    |||||||||||||||| | ||||||| | ||||||||||| ||| |||||||||| ||||||||||||||||| |||||||||||    
T  21842671 ttttatccaccaaaaatataattttt-atttggttaatcg-aaatacaattatagcgattcatatcttaaatttaatcatataca 21842589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 21858314 - 21858232
Alignment:
Q  1 ttttatccaccaaaaacagaattttttaattggttaatcggaaaaacaattatagtgattcatatcttaaattgaatcatataca 85  Q
    |||||||||||||||| | ||||||| | ||||||||||| ||| |||||||||| ||||||||||||||||| |||||||||||    
T  21858314 ttttatccaccaaaaatataattttt-atttggttaatcg-aaatacaattatagcgattcatatcttaaatttaatcatataca 21858232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 5 - 105
Target Start/End: Original strand, 31489516 - 31489613
Alignment:
Q  5 atccaccaaaaacagaattttttaattggttaatcggaaaaacaattatagtgattcatatcttaaattgaatcatatacaactccattgaattttcaca 104  Q
    |||||||||||||| || |||| ||||||||||||| ||||||||| ||| |||||| | |||||||||||||||||||| | | |||||||||||||||    
T  31489516 atccaccaaaaacataaatttt-aattggttaatcg-aaaaacaatcatactgattcgtgtcttaaattgaatcatatac-atttcattgaattttcaca 31489612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 5 - 109
Target Start/End: Complemental strand, 50387315 - 50387219
Alignment:
Q  5 atccaccaaaaacagaattttttaattggttaatcggaaaaacaattatagtgattcatatcttaaattgaatcatatacaactccattgaattttcaca 104  Q
    |||||||||||||| ||||||| |||||||||||   ||||| |||||||||| ||||||| |||||||||||||||||    | ||||||||||| |||    
T  50387315 atccaccaaaaacataattttt-aattggttaat---aaaaataattatagtggttcatattttaaattgaatcatata----tacattgaattttaaca 50387224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 107
Target Start/End: Complemental strand, 20619376 - 20619294
Alignment:
Q  24 ttttaattggttaatcggaaaaacaattatagtgattcatatcttaaattgaatcatatacaactccattgaattttcacaaca 107  Q
    |||||| ||||| |||| ||||| ||||||| | || ||||||| |||||||||||||||||  |||| |||||||||||||||    
T  20619376 ttttaagtggttgatcg-aaaaataattatacttatgcatatctaaaattgaatcatatacatttccactgaattttcacaaca 20619294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 107
Target Start/End: Complemental strand, 45472695 - 45472632
Alignment:
Q  44 aaacaattatagtgattcatatcttaaattgaatcatatacaactccattgaattttcacaaca 107  Q
    |||||||| ||||||| ||||||| ||||||||||||||||| ||| ||||||| || ||||||    
T  45472695 aaacaattctagtgatgcatatctaaaattgaatcatatacatctctattgaatgtttacaaca 45472632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 65
Target Start/End: Complemental strand, 2111534 - 2111477
Alignment:
Q  6 tccaccaaaaacagaattttttaattggttaatcggaaaaacaattatagtgattcatat 65  Q
    ||||| ||||||| ||||||| ||||||||| ||| ||||||||||||||||||||||||    
T  2111534 tccacaaaaaacataattttt-aattggtta-tcgaaaaaacaattatagtgattcatat 2111477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 107
Target Start/End: Original strand, 38489753 - 38489816
Alignment:
Q  44 aaacaattatagtgattcatatcttaaattgaatcatatacaactccattgaattttcacaaca 107  Q
    ||||||||||||| || ||||||| ||||||||||||||||| ||| | ||||| || ||||||    
T  38489753 aaacaattatagttatgcatatctaaaattgaatcatatacatctctactgaatgtttacaaca 38489816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 109
Target Start/End: Complemental strand, 14180179 - 14180078
Alignment:
Q  5 atccaccaaaaacagaattttttaattggttaatcggaaaaacaattatagtgattcatatcttaaattgaatcatatacaactccattgaattttcaca 104  Q
    |||||||||||||| ||||||| ||||||||||||| |||||  ||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |    
T  14180179 atccaccaaaaacataattttt-aattggttaatcgaaaaaa--attatagtgatacatatcttaaattgaatcatatacatctccattgaattttcaaa 14180083  T
Q  105 acaca 109  Q
    |||||    
T  14180082 acaca 14180078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 109
Target Start/End: Original strand, 9136736 - 9136820
Alignment:
Q  24 ttttaattggttaatcggaaaaacaattatagtgattcatatcttaaattgaatcatatacaactccattgaattttcacaacaca 109  Q
    ||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||   |||||||||||||||||||||||    
T  9136736 ttttaattggttaatcg-aaaaacaattatagtgattcttattttaaattgaatcatatatgtctccattgaattttcacaacaca 9136820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 9 - 109
Target Start/End: Complemental strand, 37231904 - 37231806
Alignment:
Q  9 accaaaaacagaattttttaattggttaatcggaaaaacaattatagtgattcatatcttaaattgaatcatatacaactccattgaattttcacaacac 108  Q
    |||||||||| ||||||| ||||||||||||| ||||| | |||  |||||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  37231904 accaaaaacataattttt-aattggttaatcg-aaaaatatttactgtgattcatatcttaaattgaatcgtatacatctccattgaattttcacaacac 37231807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 107
Target Start/End: Complemental strand, 12006811 - 12006746
Alignment:
Q  42 aaaaacaattatagtgattcatatcttaaattgaatcatatacaactccattgaattttcacaaca 107  Q
    |||||||||| ||||||| ||||||| ||||||||||||||||| ||||| |||||||||||||||    
T  12006811 aaaaacaattctagtgatgcatatctaaaattgaatcatatacatctccactgaattttcacaaca 12006746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 107
Target Start/End: Original strand, 18928588 - 18928651
Alignment:
Q  44 aaacaattatagtgattcatatcttaaattgaatcatatacaactccattgaattttcacaaca 107  Q
    |||||||| || |||| ||||||| ||||||||||||||||| ||| ||| |||||| ||||||    
T  18928588 aaacaattctactgatgcatatctaaaattgaatcatatacatctcaattcaatttttacaaca 18928651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 17748925 - 17748966
Alignment:
Q  44 aaacaattatagtgattcatatcttaaattgaatcatataca 85  Q
    |||||||| ||||||| |||||| ||||||||||||||||||    
T  17748925 aaacaattctagtgatgcatatcataaattgaatcatataca 17748966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 2813782 - 2813829
Alignment:
Q  25 tttaattggttaatcggaaaaacaattatagtgattcatatcttaaatt 73  Q
    ||||||| |||||||| ||||| |||||||||||||| |||||||||||    
T  2813782 tttaatttgttaatcg-aaaaataattatagtgattcgtatcttaaatt 2813829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 109
Target Start/End: Original strand, 6724465 - 6724568
Alignment:
Q  5 atccaccaaaaacagaattttttaattggttaatcggaaaaacaattatagtgattcatatcttaaattgaatcatatacaactccattg-aattttcac 103  Q
    |||||||||||| | ||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||    
T  6724465 atccaccaaaaatataattttt-aattggttaatcg-aaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaaattttcac 6724562  T
Q  104 aacaca 109  Q
    ||||||    
T  6724563 aacaca 6724568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 109
Target Start/End: Original strand, 17533413 - 17533513
Alignment:
Q  5 atccaccaaaaacagaattttttaattggttaatcggaaaaacaattatagtgattcatatcttaaattgaatcatatacaactccattgaattttcaca 104  Q
    |||||||||||||| ||||||| ||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  17533413 atccaccaaaaacataattttt-aattggtta-tcg-aaaaacaattacagtgattcatatcttaaatt-aatcatatacatctccattgaattttcaca 17533508  T
Q  105 acaca 109  Q
    |||||    
T  17533509 acaca 17533513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 7495028 - 7495095
Alignment:
Q  42 aaaaacaattatagtgattcatatcttaaattgaatcatatacaactccattgaattttcacaacaca 109  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  7495028 aaaaacaattatagtgattcatatcttaaattgaatcatgtacatctccattgaattttcacaacaca 7495095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 104
Target Start/End: Complemental strand, 16110000 - 16109907
Alignment:
Q  9 accaaaaacagaattttttaattggttaatcggaaaaacaattatagtgattcatatcttaaattgaatcatatacaactccattgaattttcaca 104  Q
    |||||||||| ||||||| ||||||||||||  ||||| ||||| | | |||||||||||| |||||||| |||||| ||||||||||||||||||    
T  16110000 accaaaaacataattttt-aattggttaatca-aaaaataattaaactaattcatatcttatattgaatcttatacatctccattgaattttcaca 16109907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 2988155 - 2988196
Alignment:
Q  44 aaacaattatagtgattcatatcttaaattgaatcatataca 85  Q
    |||||||| ||||||| ||||||| |||||||||||||||||    
T  2988155 aaacaattttagtgatgcatatctaaaattgaatcatataca 2988196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 108
Target Start/End: Complemental strand, 8486037 - 8485974
Alignment:
Q  44 aaacaattatagtgattcatatcttaaattgaatcatatacaactccattgaattttcacaacac 108  Q
    |||||||| || |||| ||||||| ||||||||||||||||| || || |||| |||||||||||    
T  8486037 aaacaattctactgatgcatatctaaaattgaatcatatacatctacactgaa-tttcacaacac 8485974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 109
Target Start/End: Complemental strand, 7732353 - 7732251
Alignment:
Q  5 atccaccaaaaacagaattttttaattggttaatcggaaaaacaattatagtgattcatatcttaaattgaatcatatacaactccattgaattttcaca 104  Q
    |||||||||||||| ||||||| |||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||  ||| |||||||||||||    
T  7732353 atccaccaaaaacataattttt-aattggctaatcg-aaaaacagttatagtgattcatatcttaaattgaatcatatacatatccgttgaattttcaca 7732256  T
Q  105 acaca 109  Q
    |||||    
T  7732255 acaca 7732251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 109
Target Start/End: Complemental strand, 42990815 - 42990714
Alignment:
Q  5 atccaccaaaaacagaattttttaattggttaatcggaaaaacaattatagtgattcatatcttaaattgaatcatatacaactccattgaattttcaca 104  Q
    |||||||||||||| ||||||| |||| |||| ||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  42990815 atccaccaaaaacataattttt-aattagtta-tcg-aacaacaattatagtgattcatatcttaaattgaatcatatacatctccattgaattttcaca 42990719  T
Q  105 acaca 109  Q
    |||||    
T  42990718 acaca 42990714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 5 - 109
Target Start/End: Complemental strand, 12118444 - 12118342
Alignment:
Q  5 atccaccaaaaacagaattttttaattggttaatcggaaaaacaattatagtgattcatatcttaaattgaatcatatacaactccattgaattttcaca 104  Q
    |||||||||||| | ||||||| |||| |||||||| ||||||| ||||| ||||||||||||||||||||||||||||||  | |||||||||||||||    
T  12118444 atccaccaaaaatataattttt-aattagttaatcg-aaaaacagttatactgattcatatcttaaattgaatcatatacattttcattgaattttcaca 12118347  T
Q  105 acaca 109  Q
    |||||    
T  12118346 acaca 12118342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 41634470 - 41634422
Alignment:
Q  61 catatcttaaattgaatcatatacaactccattgaattttcacaacaca 109  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  41634470 catatcttaaattgaatgatatacatctccattgaattttcacaacaca 41634422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 26565051 - 26565010
Alignment:
Q  44 aaacaattatagtgattcatatcttaaattgaatcatataca 85  Q
    |||||||||||||||| ||||||| |||||||||||||||||    
T  26565051 aaacaattatagtgatacatatctaaaattgaatcatataca 26565010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 107
Target Start/End: Complemental strand, 5836605 - 5836542
Alignment:
Q  44 aaacaattatagtgattcatatcttaaattgaatcatatacaactccattgaattttcacaaca 107  Q
    |||||||||||  ||| ||||| | ||||||||||||||||| || || |||||||||||||||    
T  5836605 aaacaattataccgatacatatataaaattgaatcatatacatcttcactgaattttcacaaca 5836542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 27972125 - 27972024
Alignment:
Q  2 tttatccaccaaaaacagaattttttaattggttaatcggaaaaacaattatagtgattcatatcttaaattgaatcatatacaactccattgaattttc 101  Q
    ||||||||||||||||| | ||||  ||||||||| ||  ||||| |||| ||  |||||||||||||||||||||| |||||| ||  ||| |||||||    
T  27972125 tttatccaccaaaaacatagttttg-aattggttagtca-aaaaataattttaccgattcatatcttaaattgaatcttatacatctttattaaattttc 27972028  T
Q  102 acaa 105  Q
    ||||    
T  27972027 acaa 27972024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 107
Target Start/End: Original strand, 12848496 - 12848532
Alignment:
Q  71 attgaatcatatacaactccattgaattttcacaaca 107  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  12848496 attgaattatatacatctccattgaattttcacaaca 12848532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 105
Target Start/End: Complemental strand, 26352723 - 26352625
Alignment:
Q  5 atccaccaaaaacagaattttttaattggttaatcggaaaaacaattatagtgattcatatcttaaattgaatcatatacaactccattgaattttcaca 104  Q
    |||||||||||||| ||||||| ||||||||||||| | ||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||    
T  26352723 atccaccaaaaacataattttt-aattggttaatcg-agaaacaattatagtgactcatatcttaaattgaatcatacacatctccattgaattttcaca 26352626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 5 - 109
Target Start/End: Original strand, 43355729 - 43355830
Alignment:
Q  5 atccaccaaaaacagaattttttaattggttaatcggaaaaacaattatagtgattcatatcttaaattgaatcatatacaactccattgaattttcaca 104  Q
    |||||||||||||| ||||||| |||| ||||    |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  43355729 atccaccaaaaacataattttt-aattcgttata--gaaaaacaattatagtgattcatatcttaacttgaatcatatacatctccattgaattttcaca 43355825  T
Q  105 acaca 109  Q
    |||||    
T  43355826 acaca 43355830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 9 - 107
Target Start/End: Complemental strand, 3353242 - 3353146
Alignment:
Q  9 accaaaaacagaattttttaattggttaatcggaaaaacaattatagtgattcatatcttaaattgaatcatatacaactccattgaattttcacaaca 107  Q
    |||||||||| ||||||| || |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||  |||||| |||||||||||||    
T  3353242 accaaaaacataattttt-aactggttaatcg-aaaaacaattataatgattcatatcttaaattgaatcatatacatttccattaaattttcacaaca 3353146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 36925662 - 36925582
Alignment:
Q  9 accaaaaacagaattttttaattggttaatcggaaaaacaattatagtgattcatatcttaaattgaatcatatacaactcca 91  Q
    |||||||||| ||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||| |||||    
T  36925662 accaaaaacataattttt-aattggttaatcg-aaaaacaattatagtcattcatatcttaaattgactcatatacatctcca 36925582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 45388861 - 45388776
Alignment:
Q  23 tttttaattggttaatcggaaaaacaattatagtgattcatatcttaaattgaatcatatacaactccattgaattttcacaacaca 109  Q
    ||||||||| |||||||| ||||| ||||||||||||| |||||||||||||||||| ||  | |||||||||||||||||||||||    
T  45388861 tttttaattagttaatcg-aaaaataattatagtgatttatatcttaaattgaatcaaattaatctccattgaattttcacaacaca 45388776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 109
Target Start/End: Complemental strand, 18858596 - 18858498
Alignment:
Q  9 accaaaaacagaattttttaattggttaatcggaaaaacaattatagtgattcatatcttaaattgaatcatatacaactccattgaattttcacaacac 108  Q
    |||||||||| |||| || ||||||||||||| ||||||||||||| | ||||||||| |||||||||||||||||| || |||||||||| |||| |||    
T  18858596 accaaaaacataattatt-aattggttaatcg-aaaaacaattatattcattcatatcataaattgaatcatatacatcttcattgaatttacacatcac 18858499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 44 - 107
Target Start/End: Original strand, 16496821 - 16496884
Alignment:
Q  44 aaacaattatagtgattcatatcttaaattgaatcatatacaactccattgaattttcacaaca 107  Q
    |||||||| || ||||||| |||| ||||||||||||||||| || ||||||||||||||||||    
T  16496821 aaacaattttactgattcacatctaaaattgaatcatatacatcttcattgaattttcacaaca 16496884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 107
Target Start/End: Original strand, 37272917 - 37272999
Alignment:
Q  24 ttttaattggttaatcggaaaaacaattatagtgattcatatcttaaattgaatcatatacaactccattgaattttcacaaca 107  Q
    |||||| ||||| |||| |||||||||| || |||| ||| ||| ||||||||||||||||| ||| | |||||||| ||||||    
T  37272917 ttttaagtggttcatcg-aaaaacaattttattgatgcatgtctaaaattgaatcatatacatctctactgaatttttacaaca 37272999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 107
Target Start/End: Original strand, 38221640 - 38221703
Alignment:
Q  44 aaacaattatagtgattcatatcttaaattgaatcatatacaactccattgaattttcacaaca 107  Q
    |||||||| ||||||| ||||||  ||||||||||||||||| ||| ||||||| || ||||||    
T  38221640 aaacaattctagtgatgcatatccaaaattgaatcatatacatctctattgaatgtttacaaca 38221703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 107
Target Start/End: Complemental strand, 41323985 - 41323922
Alignment:
Q  44 aaacaattatagtgattcatatcttaaattgaatcatatacaactccattgaattttcacaaca 107  Q
    |||||||| || |||| ||||||| ||||||||||||||||| ||| | |||||||| ||||||    
T  41323985 aaacaattttactgatgcatatctaaaattgaatcatatacatctctactgaatttttacaaca 41323922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 86
Target Start/End: Complemental strand, 40498717 - 40498675
Alignment:
Q  44 aaacaattatagtgattcatatcttaaattgaatcatatacaa 86  Q
    |||||||| ||||||| ||||||| ||||||||||||||||||    
T  40498717 aaacaattctagtgatgcatatctaaaattgaatcatatacaa 40498675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 38140681 - 38140641
Alignment:
Q  45 aacaattatagtgattcatatcttaaattgaatcatataca 85  Q
    |||||||||| |||| ||||||| |||||||||||||||||    
T  38140681 aacaattatattgatgcatatctaaaattgaatcatataca 38140641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 44746543 - 44746443
Alignment:
Q  5 atccaccaaaaacagaattttttaattggttaatcggaaaaacaattatagtgattcatatcttaaattgaatcatatacaactccattgaattttcaca 104  Q
    |||||||||||||| ||||| | ||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||| ||| ||||||||||||||    
T  44746543 atccaccaaaaacataatttat-aattggttaatcg-aaaaacaattatagtaatttatatcttaaattgaatcatatacatctcaattgaattttcaca 44746446  T
Q  105 aca 107  Q
    |||    
T  44746445 aca 44746443  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 109
Target Start/End: Original strand, 43770555 - 43770657
Alignment:
Q  5 atccaccaaaaacagaattttttaattggttaatcggaaaaacaattatagtgattcatatcttaaattgaatcatatacaactccattgaattttcaca 104  Q
    ||||| |||||||| ||||||| || |||||||||| ||| |||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  43770555 atccaacaaaaacacaattttt-aactggttaatcg-aaagacaattgtagtgattcatatcttaaattgaatcatatacatcttcattgaattttcaca 43770652  T
Q  105 acaca 109  Q
    |||||    
T  43770653 acaca 43770657  T

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Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 109
Target Start/End: Original strand, 22198879 - 22198964
Alignment:
Q  23 tttttaattggttaatcggaaaaacaattatagtgattcatatcttaaattgaatcatatacaactccattgaattttcacaacaca 109  Q
    |||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||| || |||| |||||| ||||||||    
T  22198879 tttttaattggttaatcg-aaaaacaattatagtgattcgtgtcttaaattgaatcatatacatcttcatttaatttttacaacaca 22198964  T

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Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 109
Target Start/End: Original strand, 34075145 - 34075246
Alignment:
Q  5 atccaccaaaaacagaattttttaattggttaatcggaaaaacaattatagtgattcatatcttaaattgaatcatatacaactccattgaattttcaca 104  Q
    |||||||||||||| ||||||| |||| |||| ||| |||| || ||||||||||||||||||||||||||||| |||||| ||| |||||||||||| |    
T  34075145 atccaccaaaaacataattttt-aatttgtta-tcg-aaaagcagttatagtgattcatatcttaaattgaatcgtatacatctcaattgaattttcata 34075241  T
Q  105 acaca 109  Q
    |||||    
T  34075242 acaca 34075246  T

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Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 105
Target Start/End: Complemental strand, 21619674 - 21619592
Alignment:
Q  23 tttttaattggttaatcggaaaaacaattatagtgattcatatcttaaa-ttgaatcatatacaactccattgaattttcacaa 105  Q
    ||||| |||| ||||||| ||||||||||||| | |||||||||||||| |||||||||||||| || ||||||||||||||||    
T  21619674 tttttcattgattaatcg-aaaaacaattatactcattcatatcttaaaattgaatcatatacatcttcattgaattttcacaa 21619592  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 44 - 107
Target Start/End: Complemental strand, 53586497 - 53586434
Alignment:
Q  44 aaacaattatagtgattcatatcttaaattgaatcatatacaactccattgaattttcacaaca 107  Q
    |||||||||||||||| ||||||| ||||||||||||||||| ||| ||||||| || ||||||    
T  53586497 aaacaattatagtgatgcatatctgaaattgaatcatatacatctctattgaatgtttacaaca 53586434  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 10037902 - 10037953
Alignment:
Q  56 tgattcatatcttaaattgaatcatatacaactccattgaattttcacaaca 107  Q
    |||| ||||||| ||||||||||||||||| ||||||||||||||| |||||    
T  10037902 tgatgcatatctaaaattgaatcatatacatctccattgaattttcgcaaca 10037953  T

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Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 109
Target Start/End: Complemental strand, 48138631 - 48138530
Alignment:
Q  5 atccaccaaaaacagaattttttaattggttaatcggaaaaacaattatagtgattcatatcttaaattgaatcatatacaactccattgaattttcaca 104  Q
    |||||||||||||| ||||||| ||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |    
T  48138631 atccaccaaaaacataattttt-aattggtta-tcg-aaaaataattatagtgattcatatcttaaattgaatcatatacatctccattaaattttcaga 48138535  T
Q  105 acaca 109  Q
    |||||    
T  48138534 acaca 48138530  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 44798181 - 44798287
Alignment:
Q  1 ttttatccaccaaaaacagaattttttaattggttaatcggaaaaacaattatagtgattcatatcttaaattgaatcatatacaactccattgaatttt 100  Q
    |||||||||||||||||| || |||| ||||||||||| | | ||| ||||||||||||||||||||||||||||| || ||||| ||||| ||||||||    
T  44798181 ttttatccaccaaaaacataaatttt-aattggttaattg-agaaataattatagtgattcatatcttaaattgaaacacatacatctccactgaatttt 44798278  T
Q  101 cacaacaca 109  Q
    |||||||||    
T  44798279 cacaacaca 44798287  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 46192301 - 46192369
Alignment:
Q  41 gaaaaacaattatagtgattcatatcttaaattgaatcatatacaactccattgaattttcacaacaca 109  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||| || ||||||||||||||||||||    
T  46192301 gaaaaacaattattgtgattcatatcttaaattaaatcatatacatcttcattgaattttcacaacaca 46192369  T

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Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 23 - 109
Target Start/End: Original strand, 31397197 - 31397282
Alignment:
Q  23 tttttaattggttaatcggaaaaacaattatagtgattcatatcttaaattgaatcatatacaactccattgaattttcacaacaca 109  Q
    |||| ||||||||||| | ||||||||||||||||||| |||||||||||||| ||||||| |  |||||| |||||||||||||||    
T  31397197 ttttcaattggttaattg-aaaaacaattatagtgatttatatcttaaattgagtcatatatatttccattcaattttcacaacaca 31397282  T

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Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 5 - 78
Target Start/End: Complemental strand, 24699880 - 24699810
Alignment:
Q  5 atccaccaaaaacagaattttttaattggttaatcggaaaaacaattatagtgattcatatcttaaattgaatc 78  Q
    |||||||||||||| ||||||| ||||||||| ||| ||||||||||||||| |||||||||||||||||||||    
T  24699880 atccaccaaaaacataattttt-aattggtta-tcg-aaaaacaattatagtaattcatatcttaaattgaatc 24699810  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 104
Target Start/End: Complemental strand, 16817950 - 16817877
Alignment:
Q  28 aattggttaatcggaaaaacaattatagtgattcatatcttaaattgaatcatatacaactccattgaattttcaca 104  Q
    ||||| ||||||| ||||||||||||| ||||||| |||||||||| ||||||||||| |||||||| |||||||||    
T  16817950 aattgattaatcg-aaaaacaattatactgattca-atcttaaattaaatcatatacatctccattg-attttcaca 16817877  T

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Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 107
Target Start/End: Complemental strand, 2483847 - 2483800
Alignment:
Q  60 tcatatcttaaattgaatcatatacaactccattgaattttcacaaca 107  Q
    |||||||||||||||||||||||||| || ||||| ||||||||||||    
T  2483847 tcatatcttaaattgaatcatatacatcttcattgcattttcacaaca 2483800  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 25482627 - 25482671
Alignment:
Q  41 gaaaaacaattatagtgattcatatcttaaattgaatcatataca 85  Q
    |||||||||||||| |||| ||||||| |||||||||||||||||    
T  25482627 gaaaaacaattatattgatgcatatctaaaattgaatcatataca 25482671  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 91
Target Start/End: Complemental strand, 3094291 - 3094258
Alignment:
Q  58 attcatatcttaaattgaatcatatacaactcca 91  Q
    |||||||||||||||||||||||||||| |||||    
T  3094291 attcatatcttaaattgaatcatatacatctcca 3094258  T

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Target: scaffold0001 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 394278 - 394217
Alignment:
Q  23 tttttaattggttaatcggaaaaacaattatagtgattcatatcttaaattgaatcatataca 85  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||    
T  394278 tttttaattggttaatcgaaaaaa-aattatagtgattcatatcttaaatcgaatcatataca 394217  T

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