View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6854_low_50 (Length: 220)

Name: NF6854_low_50
Description: NF6854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6854_low_50
NF6854_low_50
[»] chr2 (7 HSPs)
chr2 (1-220)||(2327002-2327221)
chr2 (1-213)||(2330724-2330936)
chr2 (1-213)||(2303454-2303666)
chr2 (3-213)||(2293841-2294051)
chr2 (1-213)||(2321155-2321368)
chr2 (1-213)||(2351030-2351242)
chr2 (3-213)||(2310172-2310382)
[»] chr8 (4 HSPs)
chr8 (1-199)||(41127050-41127248)
chr8 (1-109)||(26506749-26506857)
chr8 (33-88)||(26494725-26494780)
chr8 (132-206)||(26494607-26494681)


Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 2327221 - 2327002
Alignment:
Q  1 gatcctcccaaacacgaggatccaaccccatctctgccaccatgaaattcaccgtcccatttttaggcaccaaataaccattcaaaaccacatcatcgct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2327221 gatcctcccaaacacgaggatccaaccccatctctgccaccatgaaattcaccgtcccatttttaggcaccaaataaccattcaaaaccacatcatcgct 2327122  T
Q  101 cattgcatgaggcaacacaaaatgccctggtggatgacgccttaacccttccaaaaccacacacttcaaataccgaagtttatgcaagtcttcctctttc 200  Q
    || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2327121 cactgcatgaggcaacacaaaatgccctggtggatgacgcctcaacccttccaaaaccacacacttcaaataccgaagtttatgcaagtcttcctctttc 2327022  T
Q  201 acttcctccttctttacaac 220  Q
    ||||||||||||| ||||||    
T  2327021 acttcctccttctctacaac 2327002  T

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Target: chr2; HSP #2
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 2330936 - 2330724
Alignment:
Q  1 gatcctcccaaacacgaggatccaaccccatctctgccaccatgaaattcaccgtcccatttttaggcaccaaataaccattcaaaaccacatcatcgct 100  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  2330936 gatcctcccaaacacgagggtccaaccccatctctgcaaccataaaattcaccgtcccatctttaggcaccaaataaccattcaaaaccacatcctcgct 2330837  T
Q  101 cattgcatgaggcaacacaaaatgccctggtggatgacgccttaacccttccaaaaccacacacttcaaataccgaagtttatgcaagtcttcctctttc 200  Q
    || ||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2330836 cactgcgtgaggcaacacgaaatgccctggtggatgacgcctcaacccttccaaaaccacgcacttcaaataccgaagtttatgcaagtcttcctctttc 2330737  T
Q  201 acttcctccttct 213  Q
    |||||||||||||    
T  2330736 acttcctccttct 2330724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 2303666 - 2303454
Alignment:
Q  1 gatcctcccaaacacgaggatccaaccccatctctgccaccatgaaattcaccgtcccatttttaggcaccaaataaccattcaaaaccacatcatcgct 100  Q
    ||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||  |    
T  2303666 gatcctcccaaacacgaggatcccaccccatctccgccagcatgaaattcaccgtcccatttttaggcaccaaataaccgttcaaaaccacatcctcttt 2303567  T
Q  101 cattgcatgaggcaacacaaaatgccctggtggatgacgccttaacccttccaaaaccacacacttcaaataccgaagtttatgcaagtcttcctctttc 200  Q
    ||  || || ||||||| ||||||||| |||||||||||||| |||||||||||||| ||||| ||||||||||||||||| ||||| ||||||||||||    
T  2303566 caccgcgtgtggcaacagaaaatgccccggtggatgacgcctcaacccttccaaaacaacacatttcaaataccgaagtttctgcaattcttcctctttc 2303467  T
Q  201 acttcctccttct 213  Q
    |||||||||||||    
T  2303466 acttcctccttct 2303454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 3 - 213
Target Start/End: Complemental strand, 2294051 - 2293841
Alignment:
Q  3 tcctcccaaacacgaggatccaaccccatctctgccaccatgaaattcaccgtcccatttttaggcaccaaataaccattcaaaaccacatcatcgctca 102  Q
    |||||||||||||||||||||||| ||||||| |||| || ||||||||||||||| |||||||||||||||||||| | |||||||||||| ||  |||    
T  2294051 tcctcccaaacacgaggatccaacgccatctccgccagcaagaaattcaccgtcccgtttttaggcaccaaataaccgtccaaaaccacatcctctttca 2293952  T
Q  103 ttgcatgaggcaacacaaaatgccctggtggatgacgccttaacccttccaaaaccacacacttcaaataccgaagtttatgcaagtcttcctctttcac 202  Q
      || || ||||||  ||| | ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2293951 ccgcgtgtggcaacggaaatttccccggtggatgacgcctcaacccttccaaaaccacacacttcaaataccgaagtttctgcaagtcttcctctttcac 2293852  T
Q  203 ttcctccttct 213  Q
    |||||||||||    
T  2293851 ttcctccttct 2293841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 2321368 - 2321155
Alignment:
Q  1 gatcctcccaaacacgaggatccaaccccatctctgccaccatgaaattcaccgtcccatttttaggcaccaaataaccattcaaaaccacatcatcgct 100  Q
    ||||||||||||||||||||||| || ||||||| | || ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||  |    
T  2321368 gatcctcccaaacacgaggatcccacgccatctccgacagcatgaaattcaccgtcccatttttaggcaccaaataaccgttcaaaaccacatcctcttt 2321269  T
Q  101 cattgcatgaggcaacacaaaatgccc-tggtggatgacgccttaacccttccaaaaccacacacttcaaataccgaagtttatgcaagtcttcctcttt 199  Q
    ||  |  || | ||||||||||||||| ||||||||||||||| | ||||||||||||||| ||||||||||| |||||||| ||||||| |||||||||    
T  2321268 caccgtgtgtgccaacacaaaatgcccctggtggatgacgcctcatcccttccaaaaccacgcacttcaaatatcgaagtttctgcaagttttcctcttt 2321169  T
Q  200 cacttcctccttct 213  Q
    ||||||||||||||    
T  2321168 cacttcctccttct 2321155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 2351242 - 2351030
Alignment:
Q  1 gatcctcccaaacacgaggatccaaccccatctctgccaccatgaaattcaccgtcccatttttaggcaccaaataaccattcaaaaccacatcatcgct 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| || |||| |||||| ||  |    
T  2351242 gatcctcccaaacacgaggatcccaccccatctctgccaccataaaattgaccgtcccatttttaggcaccaaataaccgttaaaaagcacatcctctgt 2351143  T
Q  101 cattgcatgaggcaacacaaaatgccctggtggatgacgccttaacccttccaaaaccacacacttcaaataccgaagtttatgcaagtcttcctctttc 200  Q
    ||  || || |||||||||  |||||| |||||||||||||| |||||||||||||||||||| |||| ||||  |||||| ||||| ||||||||||||    
T  2351142 caccgcgtgtggcaacacattatgccccggtggatgacgcctcaacccttccaaaaccacacatttcagatacaaaagtttctgcaaatcttcctctttc 2351043  T
Q  201 acttcctccttct 213  Q
    |||||| ||||||    
T  2351042 acttccaccttct 2351030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 3 - 213
Target Start/End: Complemental strand, 2310382 - 2310172
Alignment:
Q  3 tcctcccaaacacgaggatccaaccccatctctgccaccatgaaattcaccgtcccatttttaggcaccaaataaccattcaaaaccacatcatcgctca 102  Q
    ||||||||||||||| |||||||| ||||||| ||||  | ||||||||||||||| |||||||||||||||||||| | |||||||||||| ||  |||    
T  2310382 tcctcccaaacacgacgatccaacgccatctccgccagaaagaaattcaccgtcccgtttttaggcaccaaataaccgtccaaaaccacatcctctttca 2310283  T
Q  103 ttgcatgaggcaacacaaaatgccctggtggatgacgccttaacccttccaaaaccacacacttcaaataccgaagtttatgcaagtcttcctctttcac 202  Q
      || || ||||||  ||| | ||| | |||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  2310282 ccgcgtgtggcaacggaaatttccccgatggatgacgcctcaacccttccaaaaccacacacttcaaataccaaagtttctgcaagtcttcctctttcac 2310183  T
Q  203 ttcctccttct 213  Q
    |||||||||||    
T  2310182 ttcctccttct 2310172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 9e-23; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 41127248 - 41127050
Alignment:
Q  1 gatcctcccaaacacgaggatccaaccccatctctgccaccatgaaattcaccgtcccatttttaggcaccaaataaccattcaaaaccacatcatcgct 100  Q
    |||| |||||||||| ||| |||  ||| || ||||||||||||||||||||   | |||||||||||| ||| ||||| |  ||||||||||| ||  |    
T  41127248 gatcttcccaaacactagggtccctccctatgtctgccaccatgaaattcactaccacatttttaggcagcaagtaaccgtcgaaaaccacatcctcctt 41127149  T
Q  101 cattgcatgaggcaacacaaaatgccctggtggatgacgccttaacccttccaaaaccacacacttcaaataccgaagtttatgcaagtcttcctcttt 199  Q
    ||  ||||| ||||||||||| ||||| ||||| |||| ||| | ||||||||||| ||||||||| | |||  | || || |||||||||||||||||    
T  41127148 caccgcatggggcaacacaaagtgccccggtgggtgacacctcagcccttccaaaatcacacactttagatatggtaggttctgcaagtcttcctcttt 41127050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 26506857 - 26506749
Alignment:
Q  1 gatcctcccaaacacgaggatccaaccccatctctgccaccatgaaattcaccgtcccatttttaggcaccaaataaccattcaaaaccacatcatcgct 100  Q
    |||||||||||||||  |||||| |||| | |||||||||||| ||||| || |||||||||||||||||||| ||||| || |||| |||||| ||| |    
T  26506857 gatcctcccaaacacttggatcccacccaacctctgccaccataaaattaactgtcccatttttaggcaccaagtaaccgttaaaaatcacatcctcggt 26506758  T
Q  101 cattgcatg 109  Q
    || ||||||    
T  26506757 cactgcatg 26506749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 26494780 - 26494725
Alignment:
Q  33 tctgccaccatgaaattcaccgtcccatttttaggcaccaaataaccattcaaaac 88  Q
    ||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||    
T  26494780 tctgccaccataaaattcacagtcccatttttaggcaccaagtaaccattcaaaac 26494725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 26494681 - 26494607
Alignment:
Q  132 ggatgacgccttaacccttccaaaaccacacacttcaaataccgaagtttatgcaagtcttcctctttcacttcc 206  Q
    ||||||||||||||||||||||||| ||||  |||||||||  | | ||| | ||| ||||||||| ||||||||    
T  26494681 ggatgacgccttaacccttccaaaatcacagccttcaaatatggcaatttctccaaatcttcctctctcacttcc 26494607  T

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