View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6854_low_51 (Length: 215)
Name: NF6854_low_51
Description: NF6854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6854_low_51 |
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Alignment Details
Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 13145989 - 13145884
Alignment:
| Q |
18 |
tatgctatatacacttttgaagaatacttccgtttctctacacaacttagtaattcatctgtatatgctatattattaacaaacaacacatacaagcctt |
117 |
Q |
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| T |
13145989 |
tatgctatatacacttttgaagaatatttccgtttctctatacaacttagtaattcatctgtatatgctatattcttaacaaacaacacatacaagcctt |
13145890 |
T |
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| Q |
118 |
caacat |
123 |
Q |
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|||||| |
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| T |
13145889 |
caacat |
13145884 |
T |
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Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 129 - 184
Target Start/End: Complemental strand, 13145836 - 13145781
Alignment:
| Q |
129 |
atccaaagaatgattcactgacttcatatttatcatttccctttatgcatccatat |
184 |
Q |
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||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
13145836 |
atccaaaaaatgattcactgagttcatgtttatcatttccctttatgcatccatat |
13145781 |
T |
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