View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6854_low_6 (Length: 669)
Name: NF6854_low_6
Description: NF6854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6854_low_6 |
 |  |
|
Alignment Details
Target: chr3 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 25 - 609
Target Start/End: Original strand, 8522418 - 8523002
Alignment:
| Q |
25 |
aaatatcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcctattccaatcacaaatccacatccgtatccaattgccactggt |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8522418 |
aaatatcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcctattccaatcacaaatccacatccgtatccaattgccactggt |
8522517 |
T |
 |
| Q |
125 |
ttccatccaaatccaaatttctctttactgcaaaaaatgttggctgaaggtgtagaatgttgttcaggtccacacatttttgacaagggtaatccacata |
224 |
Q |
| |
|
|||||||||||| |||| ||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8522518 |
ttccatccaaattcaaacttctcttcactgcaaaagttgttggctgaaggtgcagaatgttgttcaggtccacacatttttgacaagggtaatccacata |
8522617 |
T |
 |
| Q |
225 |
actccaagtttccttcataggaatcatttgtaaaagtattgaattgctttccctgaggtatttctcccacaagacgattattggaaagatccaagacttc |
324 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8522618 |
aatccaagtttccttcataagaatcatttgtaaatgtattgaattgctttccctgaggtatttctcccacaagacgattattggaaagatccaagacttc |
8522717 |
T |
 |
| Q |
325 |
aagactgttaagattggttaattccaaaggaattgcaccggttaacatatttgaggaaagatccaaagattccaagtatgtcaagtttcctatggatttc |
424 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8522718 |
aagactgttaagattggttaattccaaaggaatcacatcggttaacatatttgaggaaagatccaaagattccaagtatgtcaagtttcctatggatttg |
8522817 |
T |
 |
| Q |
425 |
ggaatatgacctgtaagtctgttatgggaaaggttaagccctatgattgcatgaagctcaccaataacgtctggaatctctccttcaaatttgtttcttg |
524 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||| |
|
|
| T |
8522818 |
ggaatatgacctgtaagtctgttatgggaaaggttaagccctatgattgcatgaagctcaccaataatctttggaatctcgccttcaaatttgtttcttg |
8522917 |
T |
 |
| Q |
525 |
acaaatcaataattacaaagatgtttggaattttcacaaatgtcattttgttaccttttgtcgccacaatcacagaatcatagta |
609 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| | | |||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
8522918 |
acaaatcaataattacaaagttgtttggaattttcactagtttcattttgttcccttttgtcgccacaatcacagaatcatagta |
8523002 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 25 - 603
Target Start/End: Original strand, 11117452 - 11118036
Alignment:
| Q |
25 |
aaatatcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcctattccaatcacaaatccacatccgtatccaattgccactggt |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||| | |
|
|
| T |
11117452 |
aaatatcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcttattccaatcacaaatccacatgcatatccaattgccactgct |
11117551 |
T |
 |
| Q |
125 |
ttccatccaaatccaaatttctctttactgcaaaa--aa----tgttggctgaaggtgtagaatgttgttcaggtccacacatttttgacaagggtaatc |
218 |
Q |
| |
|
||||||||||||||||||||||||| | | ||| | || ||||||||||||||| ||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
11117552 |
ttccatccaaatccaaatttctcttcattccaagaggaagagttgttggctgaaggtggagaatgttgttcaggtccacatttctttgacaagggtaatc |
11117651 |
T |
 |
| Q |
219 |
cacataactccaagtttccttcataggaatcatttgtaaaagtattgaattgctttccctgaggtatttctcccacaagacgattattggaaagatccaa |
318 |
Q |
| |
|
|||||||| | | |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||| | ||||| |||| ||| || |
|
|
| T |
11117652 |
cacataaccctgaatttccttcataggaatcatttgtaaatgtattgaattgctttccttgaggtatttctcccactagatggttatttgaaatatctaa |
11117751 |
T |
 |
| Q |
319 |
gacttcaagactgttaagattggttaattccaaaggaattgcaccggttaacatatttgaggaaagatccaaagattccaagtatgtcaagtttcctatg |
418 |
Q |
| |
|
|||||||||| | | |||||||||||| |||||| ||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
11117752 |
gacttcaagaaagcccaaattggttaattctgcaggaatcacactggttaacatatttgatgaaagatccaaagattccaagtatgccaagtttcctatg |
11117851 |
T |
 |
| Q |
419 |
gatttcggaatatgacctgtaagtctgttatgggaaaggttaagccctatgattgcatgaagctcaccaataacgtctggaatctctccttcaaatttgt |
518 |
Q |
| |
|
|| || ||||||||||| |||||||||||| ||||||| ||||||||| ||| |||||||||||| |||||| | | || |||||||||||||||||||| |
|
|
| T |
11117852 |
gagttgggaatatgaccagtaagtctgttacgggaaagattaagccctttgagtgcatgaagctctccaatagcatttgtaatctctccttcaaatttgt |
11117951 |
T |
 |
| Q |
519 |
ttcttgacaaatcaataattacaaagatgtttggaattttcacaaatgtcattttgttaccttttgtcgccacaatcacagaatc |
603 |
Q |
| |
|
||||||||||||||||| |||| || | ||||||||||||| | |||||||||||| |||||| | ||||| |||||||||| |
|
|
| T |
11117952 |
ttcttgacaaatcaatacttactaactttattggaattttcaccagtgtcattttgttcccttttatttccacagtcacagaatc |
11118036 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 25 - 603
Target Start/End: Complemental strand, 25523812 - 25523231
Alignment:
| Q |
25 |
aaatatcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcctattccaatcacaaatccacatccgtatccaattgccactggt |
124 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||| |||| ||| |
|
|
| T |
25523812 |
aaatatcatcacaagccatctaggctttccaactaaaaacatacaatatccaatgcctattccaatcagaaatccacatccatatccaattaccaccggt |
25523713 |
T |
 |
| Q |
125 |
ttccatccaaatccaaatttctctttactgcaaaaaat---gttggctgaaggtgtagaatgttgttcaggtccacacatttttgacaagggtaatccac |
221 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||| | ||||| |||||||| ||||||||||||| ||||||| | ||||||||||| ||||||| |
|
|
| T |
25523712 |
atccatccaaatccaaatttctcttcactccaaaagtttttgttgggtgaaggtggagaatgttgttcaagtccacatctctttgacaagggaaatccac |
25523613 |
T |
 |
| Q |
222 |
ataactccaagtttccttcataggaatcatttgtaaaagtattgaattgctttccctgaggtatttctcccacaagacgattattggaaagatccaagac |
321 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||| | | | ||||||||||||| || ||| |
|
|
| T |
25523612 |
ataaccccaagtttccttcataggaatcatttgtaaatgtgttgaattgctttcctctaggtatttctcccaccaaatggttattggaaagattcatgac |
25523513 |
T |
 |
| Q |
322 |
ttcaagactgttaagattggttaattccaaaggaattgcaccggttaacatatttgaggaaagatccaaagattccaagtatgtcaagtttcctatggat |
421 |
Q |
| |
|
||||||| ||| | ||||||||||||| |||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
25523512 |
ttcaagaaagtttaaattggttaattccgcaggaatcacaccggttaacatattcagggaaagatccagagattccaagtatgtcaagtttcctatggat |
25523413 |
T |
 |
| Q |
422 |
ttcggaatatgacctgtaagtctgttatgggaaaggttaagccctatgattgcatgaagctcaccaataacgtctggaatctctccttcaaatttgtttc |
521 |
Q |
| |
|
|| ||||||||||| ||||||||||| |||||||||||||||||| ||| |||||||||||| |||||| | | |||||||||||||||||||||||||| |
|
|
| T |
25523412 |
ttgggaatatgaccggtaagtctgttgtgggaaaggttaagccctttgagtgcatgaagctctccaatagcatttggaatctctccttcaaatttgtttc |
25523313 |
T |
 |
| Q |
522 |
ttgacaaatcaataattacaaagatgtttggaattttcacaaatgtcattttgttaccttttgtcgccacaatcacagaatc |
603 |
Q |
| |
|
|||| ||||||||| |||||| | ||||||||||||| ||| |||||| | |||||||| |||||| |||||||||| |
|
|
| T |
25523312 |
ttgaaaaatcaatagatacaaactttattggaattttcaccaatttcatttgaatcccttttgttgccacagtcacagaatc |
25523231 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 316 - 602
Target Start/End: Original strand, 24140436 - 24140722
Alignment:
| Q |
316 |
caagacttcaagactgttaagattggttaattccaaaggaattgcaccggttaacatatttgaggaaagatccaaagattccaagtatgtcaagtttcct |
415 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||| ||||||| | ||||||||||||||||| ||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
24140436 |
caagacttcaagactgttcatattggttaattccgaaggaatcacgccggttaacatatttgatgaaagattcaaagattccaagtatgtcaactttccg |
24140535 |
T |
 |
| Q |
416 |
atggatttcggaatatgacctgtaagtctgttatgggaaaggttaagccctatgattgcatgaagctcaccaataacgtctggaatctctccttcaaatt |
515 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||||||||| |||| ||| |||||||||||| || ||| | | |||||||||||||||||||| |
|
|
| T |
24140536 |
atggattggggaatatgaccagtaagtctgttatgggaaaggttaatccctttgagtgcatgaagctctccgatagcatttggaatctctccttcaaatt |
24140635 |
T |
 |
| Q |
516 |
tgtttcttgacaaatcaataattacaaagatgtttggaattttcacaaatgtcattttgttaccttttgtcgccacaatcacagaat |
602 |
Q |
| |
|
|||||||||||| ||| ||| ||||||| | |||||||||||||| | |||||||||| | |||||||| |||||| ||||||||| |
|
|
| T |
24140636 |
tgtttcttgacatatcgatacttacaaacttttttggaattttcaccagtgtcattttggtcccttttgttgccacagtcacagaat |
24140722 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 25 - 609
Target Start/End: Complemental strand, 34241341 - 34240757
Alignment:
| Q |
25 |
aaatatcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcctattccaatcacaaatccacatccgtatccaattgccactggt |
124 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| || ||||||||||||||| |
|
|
| T |
34241341 |
aaatatcatcacaaaccatctaggctttccaattaaaaacatataatatccaaggcctattccaaacacaaatccacatccataaccaattgccactggt |
34241242 |
T |
 |
| Q |
125 |
ttccatccaaatccaaatttctctttactgcaaaaaatgttggctgaaggtgtagaatgttgttcaggtccacacatttttgacaagggtaatccacata |
224 |
Q |
| |
|
||||||||||| ||||||||||||| ||| ||||| ||||||||||||||| |||||||||||| |||||||| | |||||||||||||||||||||| |
|
|
| T |
34241241 |
ttccatccaaagccaaatttctcttcactccaaaagttgttggctgaaggtggagaatgttgttccggtccacatttctttgacaagggtaatccacata |
34241142 |
T |
 |
| Q |
225 |
actccaagtttccttcataggaatcatttgtaaaagtattgaattgctttccctgaggtatttctcccacaagacgattattggaaagatccaagacttc |
324 |
Q |
| |
|
|| ||||||| |||| ||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
34241141 |
accccaagttccctttataagaatcatttgtaaatgtattgaattgctttccttgaggtatttctcccacaagatggttattggaaagatccaagacttc |
34241042 |
T |
 |
| Q |
325 |
aagactgttaagattggttaattccaaaggaattgcaccggttaacatatttgaggaaagatccaaagattccaagtatgtcaagtttcctatggatttc |
424 |
Q |
| |
|
||||||||| | |||||||||||| |||||| ||| || | ||||||||| || |||||||| |||||||||| |||||||||| |||||||| |
|
|
| T |
34241041 |
aagactgttcaaattggttaattctgcaggaatcataccagtgagcatatttgacgagagatccaacgattccaagtttgtcaagttttgtatggattga |
34240942 |
T |
 |
| Q |
425 |
ggaatatgacctgtaagtctgttatgggaaaggttaagccctatgattgcatgaagctcaccaataacgtctggaatctctccttcaaatttgtttcttg |
524 |
Q |
| |
|
|||||| |||| || ||||||||||| ||||||||||||||| ||| ||| ||||| || || ||| | | |||||| |||| | ||| |||||||||| |
|
|
| T |
34240941 |
ggaataggaccagtgagtctgttatgtgaaaggttaagccctttgagtgcgtgaagttctcctatatcatttggaattcctccattaaacttgtttcttg |
34240842 |
T |
 |
| Q |
525 |
acaaatcaataattacaaagatgtttggaattttcacaaatgtcattttgttaccttttgtcgccacaatcacagaatcatagta |
609 |
Q |
| |
|
| ||||||||| ||||||| || ||||||||||| | |||||||||| | |||||||||| |||| |||||||||||||||| |
|
|
| T |
34240841 |
agaaatcaatacttacaaacattgttggaattttcgtcagtgtcattttgatgccttttgtcgtcacagtcacagaatcatagta |
34240757 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 25 - 607
Target Start/End: Complemental strand, 34233568 - 34232986
Alignment:
| Q |
25 |
aaatatcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcctattccaatcacaaatccacatccgtatccaattgccactggt |
124 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| || ||||||||||||||| |
|
|
| T |
34233568 |
aaatatcatcacaaaccatctaggctttccaattaaaaacatataatatccaaggcctattccaaacacaaatccacatccataaccaattgccactggt |
34233469 |
T |
 |
| Q |
125 |
ttccatccaaatccaaatttctctttactgcaaaaaatgttggctgaaggtgtagaatgttgttcaggtccacacatttttgacaagggtaatccacata |
224 |
Q |
| |
|
||||||||||| ||||||||||||| ||| ||||| ||||||||||||||| |||||||||||| |||||||| | |||||||||||||||||||||| |
|
|
| T |
34233468 |
ttccatccaaagccaaatttctcttcactccaaaagttgttggctgaaggtggagaatgttgttccggtccacatttctttgacaagggtaatccacata |
34233369 |
T |
 |
| Q |
225 |
actccaagtttccttcataggaatcatttgtaaaagtattgaattgctttccctgaggtatttctcccacaagacgattattggaaagatccaagacttc |
324 |
Q |
| |
|
|| ||||||| |||| ||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
34233368 |
accccaagttccctttataagaatcatttgtaaatgtattgaattgctttccttgaggtatttctcccacaagatggttattggaaagatccaagacttc |
34233269 |
T |
 |
| Q |
325 |
aagactgttaagattggttaattccaaaggaattgcaccggttaacatatttgaggaaagatccaaagattccaagtatgtcaagtttcctatggatttc |
424 |
Q |
| |
|
||||||||| | |||||||||||| |||||| ||| || | ||||||||| || |||||||| |||||||||| |||||||||| |||||||| |
|
|
| T |
34233268 |
aagactgttcaaattggttaattctgcaggaatcataccagtgagcatatttgacgagagatccaacgattccaagtttgtcaagttttgtatggattga |
34233169 |
T |
 |
| Q |
425 |
ggaatatgacctgtaagtctgttatgggaaaggttaagccctatgattgcatgaagctcaccaataacgtctggaatctctccttcaaatttgtttcttg |
524 |
Q |
| |
|
|||||| |||| || ||||||||||| ||||||||||||||| ||| ||| ||||| || || ||| | | |||||| |||| | ||| |||||||||| |
|
|
| T |
34233168 |
ggaataggaccagtgagtctgttatgtgaaaggttaagccctttgagtgcgtgaagttctcctatatcatttggaattcctccattaaacttgtttcttg |
34233069 |
T |
 |
| Q |
525 |
acaaatcaataattacaaagatgtttggaattttcacaaatgtcattttgttaccttttgtcgccacaatcacagaatcatag |
607 |
Q |
| |
|
| ||||||||| |||||||| | |||||||||| || |||||||| ||| | ||||| | |||||| |||||||||||||| |
|
|
| T |
34233068 |
agaaatcaatacttacaaagtttattggaatttttaccaatgtcatattgatccctttgtttgccacagtcacagaatcatag |
34232986 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 25 - 609
Target Start/End: Original strand, 42117044 - 42117631
Alignment:
| Q |
25 |
aaatatcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcctattccaatcacaaatccacatccgtatccaattgccactggt |
124 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
42117044 |
aaatatcatcacaatccatctaggctttccaattaaaaacataaaatatccaatgcctattccaatcacaaatccacatccatatccaattgccactgct |
42117143 |
T |
 |
| Q |
125 |
ttccatccaaatccaaatttctctttactgcaaaa---aatgttggctgaaggtgtagaatgttgttcaggtccacacatttttgacaagggtaatccac |
221 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||||||||||| || |||||| |||||||||||||| || |||||||| || ||||||| |
|
|
| T |
42117144 |
ttccatccaaatccaaatttctcttcactgcaaaagctgttgttggctgaaattggagaatgatgttcaggtccacaaatctttgacaacggaaatccac |
42117243 |
T |
 |
| Q |
222 |
ataactccaagtttccttcataggaatcatttgtaaaagtattgaattgctttccctgaggtatttctcccacaagacgattattggaaagatccaagac |
321 |
Q |
| |
|
|||| |||||||||||| ||||||||||||| ||| |||| ||| ||| | |||||||||| |||||| ||| | ||||||||||||| |||||| |
|
|
| T |
42117244 |
ataaacccaagtttcctttgtaggaatcatttggaaatgtatcgaagtgcggctcttgaggtatttttcccactagatggttattggaaagattcaagac |
42117343 |
T |
 |
| Q |
322 |
ttcaagactgttaagattggttaattccaaaggaattgcaccggttaacatatttgaggaaagatccaaagattccaagtatgtcaagtttcctatggat |
421 |
Q |
| |
|
|| |||| || | |||||||||||| ||| || |||||| | ||||||||| || |||||||| |||||||||| || ||||||||| |||||| |
|
|
| T |
42117344 |
ttgaagaaagtctaaattggttaattctgcagggatcataccggtaagcatatttgacgagagatccaatgattccaagtttgacaagtttcccatggat |
42117443 |
T |
 |
| Q |
422 |
ttcggaatatgacctgtaagtctgttatgggaaaggttaagccctatgattgcatgaagctcaccaataacgtctggaatctctccttcaaatttgtttc |
521 |
Q |
| |
|
|| ||||||||||| || ||||||||||||||||||||||||||| ||| |||||| || || |||||| | | |||||||||||| |||||||||||| |
|
|
| T |
42117444 |
ttgggaatatgaccggtgagtctgttatgggaaaggttaagccctttgagtgcatggaggtctccaatagcatttggaatctctccctcaaatttgtttt |
42117543 |
T |
 |
| Q |
522 |
ttgacaaatcaataattacaaagatgtttggaattttcacaaatgtcattttgttaccttttgtcgccacaatcacagaatcatagta |
609 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| |||||||||||| | |||||||||| ||||||||||||||||||||| |
|
|
| T |
42117544 |
ttgacaaatcaataattacaaaaatgtttggaattttcaccaatgtcattttgctcccttttgtcgacacaatcacagaatcatagta |
42117631 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 25 - 610
Target Start/End: Original strand, 42122795 - 42123380
Alignment:
| Q |
25 |
aaatatcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcctattccaatcacaaatccacatccgtatccaattgccactggt |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
42122795 |
aaatatcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcatattccaatcacaaatccacatccatatccaatcgccactggt |
42122894 |
T |
 |
| Q |
125 |
ttccatccaaatccaaatttctctttactgcaaaaaatgttggctgaaggtgtagaatgttgttcaggtccacacatttttgacaagggtaatccacata |
224 |
Q |
| |
|
||||||||||||| ||||||||||| ||| ||| | | ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
42122895 |
ttccatccaaatctaaatttctcttcactccaagagttcttggctgaaggtggagaatgttgttcaggtccacatttttttgacaagggtaatccacata |
42122994 |
T |
 |
| Q |
225 |
actccaagtttccttcataggaatcatttgtaaaagtattgaattgctttccctgaggtatttctcccacaagacgattattggaaagatccaagacttc |
324 |
Q |
| |
|
|| | | |||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||| | ||||| |||| ||| |||||||| |
|
|
| T |
42122995 |
accctgaatttccttcataggaatcatttgtaaatgtattgaactgctttccttgaggtatttctcccacaagatggttatttgaaatatctaagacttc |
42123094 |
T |
 |
| Q |
325 |
aagactgttaagattggttaattccaaaggaattgcaccggttaacatatttgaggaaagatccaaagattccaagtatgtcaagtttcctatggatttc |
424 |
Q |
| |
|
|||| | | |||||||| ||| |||||| || | || | ||||||||| || |||||||| ||||||||| || ||||| ||| || |||| |
|
|
| T |
42123095 |
aagaaagcccaaattggttagttctgcaggaatcacatcagtgagcatatttgatgagagatccaaccattccaagtttgacaagtatccaattgattgg |
42123194 |
T |
 |
| Q |
425 |
ggaatatgacctgtaagtctgttatgggaaaggttaagccctatgattgcatgaagctcaccaataacgtctggaatctctccttcaaatttgtttcttg |
524 |
Q |
| |
|
|||||| |||| | ||||||||||||||||||||||||||||||| |||||| |||| |||||| | | ||||||||||||||||||||||||||||| |
|
|
| T |
42123195 |
ggaataggaccattgagtctgttatgggaaaggttaagccctatgagtgcatgtagctttccaatagcatttggaatctctccttcaaatttgtttcttg |
42123294 |
T |
 |
| Q |
525 |
acaaatcaataattacaaagatgtttggaattttcacaaatgtcattttgttaccttttgtcgccacaatcacagaatcatagtag |
610 |
Q |
| |
|
||| ||||||| ||||||| | ||||||||||| || | |||||||||| | |||||||| ||||| ||||||||||| ||||| |
|
|
| T |
42123295 |
acatatcaatacttacaaacttttttggaattttaacgagtgtcattttggttccttttgttgccacggtcacagaatcagagtag |
42123380 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 25 - 609
Target Start/End: Original strand, 42128190 - 42128773
Alignment:
| Q |
25 |
aaatatcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcctattccaatcacaaatccacatccgtatccaattgccactggt |
124 |
Q |
| |
|
||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
42128190 |
aaatatcataacaagccatctagacttttcaattaaaaacatataatatccaatgcctattccaatcacaaatccacatccatatccaatcgccactggt |
42128289 |
T |
 |
| Q |
125 |
ttccatccaaatccaaatttctctttactgcaaaaaatgttggctga-aggtgtagaatgttgttcaggtccacacatttttgacaagggtaatccacat |
223 |
Q |
| |
|
||||||||||||| ||||||||||| ||| ||| | ||||| | | | ||| |||| |||||||||||||| | ||||||||||| ||||||||| |
|
|
| T |
42128290 |
ttccatccaaatctaaatttctcttcactccaagagttgttgtcaaagaattgtggaat--tgttcaggtccacaattctttgacaagggaaatccacat |
42128387 |
T |
 |
| Q |
224 |
aactccaagtttccttcataggaatcatttgtaaaagtattgaattgctttccctgaggtatttctcccacaagacgattattggaaagatccaagactt |
323 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||| ||| | ||||| |||||||| ||||||| |
|
|
| T |
42128388 |
aaccccaagtttccttcataggaatcatttgtaaatgtattgaattgcggtccttgaggtatttctcccactagatggttatttgaaagatctaagactt |
42128487 |
T |
 |
| Q |
324 |
caagactgttaagattggttaattccaaaggaattgcaccggttaacatatttgaggaaagatccaaagattccaagtatgtcaagtttcctatggattt |
423 |
Q |
| |
|
||||| | |||| ||||||| |||||| || | || | || |||||| || |||||||| ||||||||| |||||||||||| |||||||| |
|
|
| T |
42128488 |
caagaaaacccaaattgcttaattctgcaggaatcacatcagtgagcacatttgatgagagatccaaccattccaagtttgtcaagtttcccatggattt |
42128587 |
T |
 |
| Q |
424 |
cggaatatgacctgtaagtctgttatgggaaaggttaagccctatgattgcatgaagctcaccaataacgtctggaatctctccttcaaatttgtttctt |
523 |
Q |
| |
|
|||||| | || | ||| |||||||||||||||| || ||||| | ||||||||||||||||| | | | |||||| ||||||||||||||||||||| |
|
|
| T |
42128588 |
tggaatagggccaatgagtttgttatgggaaaggttgagtcctattagtgcatgaagctcaccaaaatcatttggaatatctccttcaaatttgtttctt |
42128687 |
T |
 |
| Q |
524 |
gacaaatcaataattacaaagatgtttggaattttcacaaatgtcattttgttaccttttgtcgccacaatcacagaatcatagta |
609 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |||||| ||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
42128688 |
gacaaatcaataattacaaagatatttggaattttcaccaatgtccttttgttcccttttgtcgccacaatcatagaatcatagta |
42128773 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 29 - 519
Target Start/End: Complemental strand, 41618429 - 41617939
Alignment:
| Q |
29 |
atcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcctattccaatcacaaatccacatccgtatccaattgccactggtttcc |
128 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||| | || |||||| |||||||||||| || | ||||||||| |||||||| ||||||||||||| |
|
|
| T |
41618429 |
atcatcacaagccatctaggctttccaattaacaacacaaaacatccaaggcctattccaataaccattccacatccatatccaatagccactggtttcc |
41618330 |
T |
 |
| Q |
129 |
atccaaatccaaatttctctttactgcaaaaaatgttggctgaaggtgtagaatgttgttcaggtccacacatttttgacaagggtaatccacataactc |
228 |
Q |
| |
|
||||||||||||||||||||| ||| |||| |||||| || | | | |||||||||||||||| |||| | ||||||||||| ||||| ||||| | |
|
|
| T |
41618329 |
atccaaatccaaatttctcttcactccaaaggttgttgggtggaagcggagaatgttgttcaggttcacatttctttgacaagggaaatccgcataatcc |
41618230 |
T |
 |
| Q |
229 |
caagtttccttcataggaatcatttgtaaaagtattgaattgctttccctgaggtatttctcccacaagacgattattggaaagatccaagacttcaaga |
328 |
Q |
| |
|
||||||||||||||| || ||||| | ||| |||||||| || ||||| ||||||||||||||||| ||| | |||| ||||||| ||| ||| ||| | |
|
|
| T |
41618229 |
caagtttccttcatatgagtcattggaaaatgtattgaactgttttccttgaggtatttctcccactagatggttatgagaaagattcaatactccaata |
41618130 |
T |
 |
| Q |
329 |
ctgttaagattggttaattccaaaggaattgcaccggttaacatatttgaggaaagatccaaagattccaagtatgtcaagtttcctatggatttcggaa |
428 |
Q |
| |
|
| ||| |||||| ||||||| |||||||| |||| || | |||||||| ||||||||||| ||||||| || || ||||||||||| ||||| |||| |
|
|
| T |
41618129 |
ccgttcagattgattaattctgaaggaattacaccagtgagtatatttgacgaaagatccaatgattccatgtttgacaagtttcctacggattgaggaa |
41618030 |
T |
 |
| Q |
429 |
tatgacctgtaagtctgttatgggaaaggttaagccctatgattgcatgaagctcaccaataacgtctggaatctctccttcaaatttgtt |
519 |
Q |
| |
|
|| |||| || ||||||||||||||||||||||||||| ||| || |||||||| |||||||| | |||||||||||||||| ||||| |
|
|
| T |
41618029 |
taggaccggtgagtctgttatgggaaaggttaagccctttgagtgagtgaagctccccaataacattcagaatctctccttcaaaattgtt |
41617939 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 29 - 519
Target Start/End: Complemental strand, 41572790 - 41572300
Alignment:
| Q |
29 |
atcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcctattccaatcacaaatccacatccgtatccaattgccactggtttcc |
128 |
Q |
| |
|
||||| |||||||||||||||||||| |||| |||| | || |||||| |||||||||||| || | ||||||||| |||||||| ||||||||||||| |
|
|
| T |
41572790 |
atcatcacaagccatctaggctttccggttaacaacacaaaacatccaaggcctattccaataaccattccacatccatatccaatagccactggtttcc |
41572691 |
T |
 |
| Q |
129 |
atccaaatccaaatttctctttactgcaaaaaatgttggctgaaggtgtagaatgttgttcaggtccacacatttttgacaagggtaatccacataactc |
228 |
Q |
| |
|
||||||||||||||||||||| ||| |||| |||||| || | | | |||||||||||||||| |||| | ||||||||||| ||||| ||||| | |
|
|
| T |
41572690 |
atccaaatccaaatttctcttcactccaaaggttgttgggtggaagcggagaatgttgttcaggttcacatttctttgacaagggaaatccgcataatcc |
41572591 |
T |
 |
| Q |
229 |
caagtttccttcataggaatcatttgtaaaagtattgaattgctttccctgaggtatttctcccacaagacgattattggaaagatccaagacttcaaga |
328 |
Q |
| |
|
||||||||||||||| || ||||| | ||| |||||||| || ||||| ||||||||||||||||| ||| | |||| ||||||| ||| ||| ||| | |
|
|
| T |
41572590 |
caagtttccttcatatgagtcattggaaaatgtattgaactgttttccttgaggtatttctcccactagatggttatgagaaagattcaatactccaata |
41572491 |
T |
 |
| Q |
329 |
ctgttaagattggttaattccaaaggaattgcaccggttaacatatttgaggaaagatccaaagattccaagtatgtcaagtttcctatggatttcggaa |
428 |
Q |
| |
|
| ||| |||||| ||||||| |||||||| |||| || | |||||||| ||||||||||| ||||||| || || ||||||||||| ||||| |||| |
|
|
| T |
41572490 |
ccgttcagattgattaattctgaaggaattacaccagtgagtatatttgacgaaagatccaatgattccatgtttgacaagtttcctacggattgaggaa |
41572391 |
T |
 |
| Q |
429 |
tatgacctgtaagtctgttatgggaaaggttaagccctatgattgcatgaagctcaccaataacgtctggaatctctccttcaaatttgtt |
519 |
Q |
| |
|
|| |||| || ||||||||||||||||||||||||||| ||| || |||||||| |||||||| | |||||||||||||||| ||||| |
|
|
| T |
41572390 |
taggaccggtgagtctgttatgggaaaggttaagccctttgagtgagtgaagctccccaataacattcagaatctctccttcaaaattgtt |
41572300 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 206 - 590
Target Start/End: Complemental strand, 41714152 - 41713768
Alignment:
| Q |
206 |
gacaagggtaatccacataactccaagtttccttcataggaatcatttgtaaaagtattgaattgctttccctgaggtatttctcccacaagacgattat |
305 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||| | |||| |
|
|
| T |
41714152 |
gacaagggaaatccacataaccccaagtttccttcataggaatcatttgtaaatgtattgaactgctttccttgaggtatttctcccacaagatggttat |
41714053 |
T |
 |
| Q |
306 |
tggaaagatccaagacttcaagactgttaagattggttaattccaaaggaattgcaccggttaacatatttgaggaaagatccaaagattccaagtatgt |
405 |
Q |
| |
|
| ||||||||||||||||||||| || | ||||||||| | | |||||| ||| || | ||||||||| || |||||||| |||||||||| | | |
|
|
| T |
41714052 |
tagaaagatccaagacttcaagaaagtccaaattggttaactttacaggaatccgaccagtgagcatatttgacgagagatccaatgattccaagtttat |
41713953 |
T |
 |
| Q |
406 |
caagtttcctatggatttcggaatatgacctgtaagtctgttatgggaaaggttaagccctatgattgcatgaagctcaccaataacgtctggaatctct |
505 |
Q |
| |
|
||||||||| ||||||| ||||| ||||| || ||| |||||| ||||||||||||||| ||| |||||||||| |||||||| ||||||||||| |
|
|
| T |
41713952 |
caagtttcccatggattggggaatgtgaccagtgagtttgttatatgaaaggttaagccctttgagatcatgaagctctccaataacatctggaatctcc |
41713853 |
T |
 |
| Q |
506 |
ccttcaaatttgtttcttgacaaatcaataattacaaagatgtttggaattttcacaaatgtcattttgttaccttttgtcgcca |
590 |
Q |
| |
|
|| |||||||| |||||||| ||||||||| || ||||||| |||||||||||||||| || ||||||| ||||||||||||| |
|
|
| T |
41713852 |
ccatcaaatttatttcttgaaaaatcaatacttgcaaagatttttggaattttcacaagtggggttttgtttccttttgtcgcca |
41713768 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 25 - 148
Target Start/End: Complemental strand, 41714298 - 41714175
Alignment:
| Q |
25 |
aaatatcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcctattccaatcacaaatccacatccgtatccaattgccactggt |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
41714298 |
aaatatcatgacaagccatctaggctttccgatcaaaaacatgtaatacccaatgcctattccaatcacaaatccacatccatatccaattgccactgct |
41714199 |
T |
 |
| Q |
125 |
ttccatccaaatccaaatttctct |
148 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
41714198 |
ttccatccaaatccaaatttctct |
41714175 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 370 - 546
Target Start/End: Original strand, 41444005 - 41444181
Alignment:
| Q |
370 |
catatttgaggaaagatccaaagattccaagtatgtcaagtttcctatggatttcggaatatgacctgtaagtctgttatgggaaaggttaagccctatg |
469 |
Q |
| |
|
|||||||||||| ||||||| ||||| | || | |||| ||||| | ||||| ||||| ||| |||||| | || ||||||||||| || |||||| |
|
|
| T |
41444005 |
catatttgaggagagatccattgattcgatgtttatcaaatttccaaaggattgaggaatcgcaccagtaagtttattgtgggaaaggttgagtcctatg |
41444104 |
T |
 |
| Q |
470 |
attgcatgaagctcaccaataacgtctggaatctctccttcaaatttgtttcttgacaaatcaataattacaaagat |
546 |
Q |
| |
|
||||||||||||||||||||||| | |||||| ||||||||||||||||||| ||| ||||||||| |||||||||| |
|
|
| T |
41444105 |
attgcatgaagctcaccaataacatttggaatgtctccttcaaatttgtttcctgaaaaatcaatacttacaaagat |
41444181 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 25 - 621
Target Start/End: Complemental strand, 11995179 - 11994579
Alignment:
| Q |
25 |
aaatatcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcctattccaatcacaaatccacatccgtatccaattgccactggt |
124 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
11995179 |
aaatatcatcacaagccatctaggctttccaattaaaaacatacaatatccgaggcctattccaatcacaaatccacatccatatccaattgccactggt |
11995080 |
T |
 |
| Q |
125 |
ttccatccaaatccaaatttctctttactgcaaaaaatgttg---gctgaaggtgtagaatgttgttcaggtccacacatttttgacaagggtaatccac |
221 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||| ||||| | |||||||| |||| ||||||||||||| ||| | ||||||||||| ||| ||| |
|
|
| T |
11995079 |
ttccatccaaatccaaatttctcttcactcgaaaagctgttgttgggtgaaggtggagaacgttgttcaggtccgcacttctttgacaagggaaattcac |
11994980 |
T |
 |
| Q |
222 |
ataactccaagtttccttcataggaatcatttgtaaaagtattg-aattgctttccctgaggtatttctcccacaagacgattattggaaagatccaaga |
320 |
Q |
| |
|
||||||||||||||||| |||| |||||||||| ||| || | | || || ||||| |||||||||||||||| ||| | |||||||||| || || | |
|
|
| T |
11994979 |
ataactccaagtttcctacatatgaatcatttgaaaatgtctcggaactgttttcctcgaggtatttctcccactagatggttattggaaaagtctaaaa |
11994880 |
T |
 |
| Q |
321 |
cttcaagactgttaagattggttaattccaaaggaattgcaccggttaacatatttgaggaaagatccaaagattccaagtatgtcaagtttcctatgga |
420 |
Q |
| |
|
|| ||||| | | ||||||||||| ||||| || | || | ||||||||| || ||||||| ||||||||| |||||||||||| ||||| |
|
|
| T |
11994879 |
ctgcaagaaagcccaaattggttaattttgctggaatcacatcagtgagcatatttgatgagagatccagccattccaagtttgtcaagtttcccatgga |
11994780 |
T |
 |
| Q |
421 |
tttcggaatatgacctgtaagtctgttatgggaaaggttaagccctatgattgcatgaagctcaccaataacgtctggaatctctccttcaaatttgttt |
520 |
Q |
| |
|
||| |||||| |||| | ||||||||||||||||||||||||||||| | ||| ||||||||| ||||||| | ||||||||||||||||||||||||| |
|
|
| T |
11994779 |
tttgggaataggaccaatgagtctgttatgggaaaggttaagccctataagtgcttgaagctcatcaataacatttggaatctctccttcaaatttgttt |
11994680 |
T |
 |
| Q |
521 |
cttgacaaatcaataattacaaagatgtttggaattttcacaaatgtcattttgttaccttttgtcgccacaatcacagaatcatagtaggttgcaattg |
620 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| || ||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
11994679 |
cttgacaaatcaataattactaagatgtttggaattttaacccatgtcattttgttcccttttgacgccacaatcacagaatcatagtagggtgcaattg |
11994580 |
T |
 |
| Q |
621 |
a |
621 |
Q |
| |
|
| |
|
|
| T |
11994579 |
a |
11994579 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 25 - 621
Target Start/End: Original strand, 12247751 - 12248350
Alignment:
| Q |
25 |
aaatatcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcctattccaatcacaaatccacatccgtatccaattgccactggt |
124 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
12247751 |
aaatatcatcacaagccatctaggctttccaattaaaaacatacaatatccgaggcctattccaatcacaaatccacatccatatccaattgccaccggt |
12247850 |
T |
 |
| Q |
125 |
ttccatccaaatccaaatttctctttactgcaaaaaatgttggc---tgaaggtgtagaatgttgttcaggtccacacatttttgacaagggtaatccac |
221 |
Q |
| |
|
||||||||||||||||||||| | | || ||||| ||||| ||||||| ||||| |||||||||||||||| | ||||||||||| ||||||| |
|
|
| T |
12247851 |
ttccatccaaatccaaatttcgcgtcgctccaaaagctgttgttaagtgaaggttgagaatattgttcaggtccacacttctttgacaagggaaatccac |
12247950 |
T |
 |
| Q |
222 |
ataactccaagtttccttcataggaatcatttgtaaaagtattgaattgctttccctgaggtatttctcccacaagacgattattggaaagatccaagac |
321 |
Q |
| |
|
||||||||||||||||| |||| |||||||||| ||| || | ||| || ||||| |||||||||||||||| ||| | |||||||||| || || || |
|
|
| T |
12247951 |
ataactccaagtttcctacatatgaatcatttgaaaatgtctcgaactgttttcctcgaggtatttctcccactagatggttattggaaaagtctaaaac |
12248050 |
T |
 |
| Q |
322 |
ttcaagactgttaagattggttaattccaaaggaattgcaccggttaacatatttgaggaaagatccaaagattccaagtatgtcaagtttcctatggat |
421 |
Q |
| |
|
| ||||| | | ||||||||||| ||||| || | || | ||||||||| || ||||||| ||||||||| |||||||||||| |||||| |
|
|
| T |
12248051 |
tgcaagaaagcccaaattggttaattttgctggaatcacatcagtgagcatatttgatgagagatccagccattccaagtttgtcaagtttcccatggat |
12248150 |
T |
 |
| Q |
422 |
ttcggaatatgacctgtaagtctgttatgggaaaggttaagccctatgattgcatgaagctcaccaataacgtctggaatctctccttcaaatttgtttc |
521 |
Q |
| |
|
|| |||||| |||| | ||||||||||||||||||||||||||||| | ||| ||||||||| ||||||| | |||||||||||||||||||||||||| |
|
|
| T |
12248151 |
ttgggaataggaccaatgagtctgttatgggaaaggttaagccctataagtgcttgaagctcatcaataacatttggaatctctccttcaaatttgtttc |
12248250 |
T |
 |
| Q |
522 |
ttgacaaatcaataattacaaagatgtttggaattttcacaaatgtcattttgttaccttttgtcgccacaatcacagaatcatagtaggttgcaattga |
621 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| || ||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
12248251 |
ttgacaaatcaataattactaagatgtttggaattttaacccatgtcattttgttcccttttgatgccacaatcacagaatcatagtagggtgcaattga |
12248350 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 411 - 603
Target Start/End: Complemental strand, 32682311 - 32682113
Alignment:
| Q |
411 |
ttcctatggatttcggaatatgacctgtaagtctgttatgggaaaggttaagccctatgatt------gcatgaagctcaccaataacgtctggaatctc |
504 |
Q |
| |
|
|||| ||||||| ||||||||| | || ||||||||||||||||||||||||||| ||||| ||||||||||| |||||| | | ||||||||| |
|
|
| T |
32682311 |
ttcccatggattggggaatatgatcggtgagtctgttatgggaaaggttaagccctctgattctgagtgcatgaagctccccaatagcatttggaatctc |
32682212 |
T |
 |
| Q |
505 |
tccttcaaatttgtttcttgacaaatcaataattacaaagatgtttggaattttcacaaatgtcattttgttaccttttgtcgccacaatcacagaatc |
603 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||| | ||||||||||||| | |||||||||| | ||||||||| ||| | |||||||||| |
|
|
| T |
32682211 |
tccttcaaatctgtttcttgacaaatcaatacttacaaagtttcttggaattttcactagtgtcattttgctcccttttgtccccatagtcacagaatc |
32682113 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 29 - 253
Target Start/End: Complemental strand, 9423506 - 9423281
Alignment:
| Q |
29 |
atcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcctattccaatcacaaatccacatccgtatccaattgccactggtttcc |
128 |
Q |
| |
|
||||| ||| |||||||||||||||||||||| | |||| || |||||| |||| |||||| ||| | ||||||||| |||||||||||||||| ||||| |
|
|
| T |
9423506 |
atcatcacaggccatctaggctttccaattaacagcatacaacatccaaggccttttccaagcaccattccacatccatatccaattgccactgatttcc |
9423407 |
T |
 |
| Q |
129 |
atccaaatccaaatttctctttactgcaa---aaaatgttggctgaaggtgtagaatgttgttcaggtccacacatttttgacaagggtaatccacataa |
225 |
Q |
| |
|
||||||||||||||||||||| | ||||| || |||||| ||||| |||||||| | ||| ||||||||| | || ||||||| |||| ||||| |
|
|
| T |
9423406 |
atccaaatccaaatttctcttcattgcaatataatttgttgggtgaagttgtagaatttcgtttaggtccacatttcatttacaagggaaatc--cataa |
9423309 |
T |
 |
| Q |
226 |
ctccaagtttccttcataggaatcattt |
253 |
Q |
| |
|
| || ||||||||||||| |||||||| |
|
|
| T |
9423308 |
cccccagtttccttcataaaaatcattt |
9423281 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 28 - 113
Target Start/End: Complemental strand, 32682466 - 32682381
Alignment:
| Q |
28 |
tatcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcctattccaatcacaaatccacatccgtatccaa |
113 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
32682466 |
tatcatcacaagccatctaggctttccaattaaaaacataaagtatccaatgcctattccaatcacaaatccacatccatatccaa |
32682381 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University