View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6855_high_10 (Length: 435)
Name: NF6855_high_10
Description: NF6855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6855_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 11 - 343
Target Start/End: Original strand, 50644430 - 50644758
Alignment:
| Q |
11 |
cactgacattttaaatactagtgatgaaataatgaattatttaggaggtgggtgaatagccgttttcaaatatatatcatcgaatcaagctatcctctac |
110 |
Q |
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| T |
50644430 |
cactgacattttaaatactagtgatgaaataatgaattatttaggaggtgggtgaatagccgttttcaaatatatatcatcgaatcaagctatcctctac |
50644529 |
T |
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| Q |
111 |
taaccattaatccatcgatgattgcatgcatacttcacctcaatgacatgatataagcatattaattgtacactttaacctcgcttctcttactttgcag |
210 |
Q |
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| T |
50644530 |
tagccattaatccatcgatgattgcatgcatacttcacctcaatgacatgatataagcat----attgtacactttaacctcgcttctcttactttgcag |
50644625 |
T |
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| Q |
211 |
atagtatgtatatttgttgagccaatgaaaatgcagtgcctagcggaaaacacgacgaaatggcggagaacacaaaagccaaagccattaaaatttgcca |
310 |
Q |
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| T |
50644626 |
atagtatgtatatttgttgagccaatgaaaattcagtgcctagcggaaaacacgacggaatggcggagaacacaaaagccaaagccattaaaatttgcca |
50644725 |
T |
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| Q |
311 |
actgtctcgtgaactcattcgctatccattcct |
343 |
Q |
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| T |
50644726 |
actgtctcgtgaactcattcgctatgcattcct |
50644758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 339 - 422
Target Start/End: Original strand, 50644788 - 50644871
Alignment:
| Q |
339 |
ttcctgaaaatgctctttataacgaaagcatgcttttacgaaccttcacgacacccttaatagtttaactctttgtatatgatg |
422 |
Q |
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| T |
50644788 |
ttcctaaaaatgctttttataacgaaagcatgctttcacgaaccttcacgacacccttaaaagtttaactccttgtatatgatg |
50644871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 333
Target Start/End: Original strand, 34467494 - 34467597
Alignment:
| Q |
230 |
agccaatgaaaatgcagtgcctagcggaaaacacgacgaaatggcggagaacacaaaagccaaagccattaaaatttgccaactgtctcgtgaactcatt |
329 |
Q |
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|||||||||||||| |||||||| ||||||||| | | |||||||| ||||| || ||||| ||| ||||| |||||| |||||| ||||||| || |
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| T |
34467494 |
agccaatgaaaatgtagtgcctaacggaaaacatgtcaggatggcggaaaacacggaatccaaaaccactaaaacatgccaagtgtctcatgaactcctt |
34467593 |
T |
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| Q |
330 |
cgct |
333 |
Q |
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|||| |
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| T |
34467594 |
cgct |
34467597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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