View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6855_high_19 (Length: 338)
Name: NF6855_high_19
Description: NF6855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6855_high_19 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 17 - 314
Target Start/End: Complemental strand, 44013231 - 44012933
Alignment:
| Q |
17 |
accatgttaaaagagagttttttacatacataatataaaatcatcaatacatttgtgnnnnnnn-ctcatttaaggaattaacgttctcttcttcaaaaa |
115 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
44013231 |
accatgttaaaagggagttttttacatacataatataaaatcattaatacatttgtgaaaaaaaactcatttaagaaattaacgttctcttcttcaaaaa |
44013132 |
T |
|
| Q |
116 |
gagaagaagaaagaaacaaatgttctctttaatagaatttaatctcatgaaagaannnnnnnngccataaacataatcaaaagtaacttactccgatccc |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
44013131 |
gagaagaagaaagaaacaaatgttctctttaatagaatttaatctcatgaaagaattttttttgccataaacataatcaaaagtaacttactccgaaccc |
44013032 |
T |
|
| Q |
216 |
ggttagtatgatattaagttccgttggtggtccacttgcaatccaaattgaagacatgctgtattggtttgctttaagtgatagattgtacgcagctat |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44013031 |
ggttagtatgatattaagttccgttggtggtccacttgcaatccaaattgaagacatgctgtattggtttgctttaagtgatagattgtacgcagctat |
44012933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 302
Target Start/End: Original strand, 20293597 - 20293653
Alignment:
| Q |
246 |
tccacttgcaatccaaattgaagacatgctgtattggtttgctttaagtgatagatt |
302 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||| ||||||| || ||||||||| |
|
|
| T |
20293597 |
tccactttcaatccaaatgtaagacatgctgtattgctttgcttgaactgatagatt |
20293653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University