View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6855_high_2 (Length: 840)

Name: NF6855_high_2
Description: NF6855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6855_high_2
NF6855_high_2
[»] chr1 (1 HSPs)
chr1 (50-819)||(47125867-47126648)


Alignment Details
Target: chr1 (Bit Score: 703; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 703; E-Value: 0
Query Start/End: Original strand, 50 - 819
Target Start/End: Original strand, 47125867 - 47126648
Alignment:
Q  50 atttccattgaaataaagtttcaattgtccaagtttagagggaatgaggattcaatgtctaatttgcaagaaatggatgaccttttatcaccttttcctt 149  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  47125867 atttccattgaaataaagtttcaattgtccgagtttagagggaatgaggattcaatgtctaatttgcaagaaatggatgaccttttatcatcttttcctt 47125966  T
Q  150 ttttcttgtattacctttgcatattctaaggattttctagtgttgtgtcatttcatcctttgctctttcattcacacagtagcacaaaaaccagttcgga 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47125967 ttttcttgtattacctttgcatattctaaggattttctagtgttgtgtcatttcatcctttgctctttcattcacacagtagcacaaaaaccagttcgga 47126066  T
Q  250 aagtattacgaatgagcttggactaattaaaggagcaccaacatatgataatttgaagactaatgatattacatatttcattcgtacactctagtcttgg 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47126067 aagtattacgaatgagcttggactaattaaaggagcaccaacatatgataatttgaagactaatgatattacatatttcattcgtacactctagtcttgg 47126166  T
Q  350 cataacaagaagataaaaatacaagaatatggtaggcatacacataatttattcactatgaagcacggacacagac-----acacgacacttacatgatg 444  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||    
T  47126167 cataacaagaagataaaaatacaagaatatggtaggcatacacataatttattcactatgaagcacggacacagacacttgacacgacacttacatgatg 47126266  T
Q  445 acaccaataataatttaag---atgaaataattgaatgtacccacatatgtttggatcgtgtcggacaccaa----accttcaatctaaagtgtcggtga 537  Q
    |||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||| |||||||    ||||||||||||||||||||||||    
T  47126267 acaccaataataatttaagaaaatgaaataattgaatgtacccacatatgtttggatcgtgtcgaacaccaaacacaccttcaatctaaagtgtcggtga 47126366  T
Q  538 tacatagtttattcgataccaaagctaagtctttggttagataaatagcaagaattcaaagagaatggtttcagatggatatgctgttgggaattccctt 637  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  47126367 tacatagtttattcgacaccaaagctaagtctttggttagataaatagcaaaaattcaaagagaatggtttcagatggatatgctgttgggaattccctt 47126466  T
Q  638 accagtgagtccaccctccctagaataatcagaggtattgggaaacagaagggtatatggcaatttcactggcccatttctgttcttcaaacttgggtct 737  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||     
T  47126467 accagtgagtccaccctccctagaataatcagaggtattgggaaacagaagggtataaggcaatttcactggcccatttctgttcttcaaacttgggtcc 47126566  T
Q  738 ttgttccttttcatgatattattctcaatctccagtagcttctgtgaaaatcgcctaaatgctgccaatggttcagcgtctg 819  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47126567 ttgttccttttcatgatattattctcaatctccagtagcttctgtgaaaatcgcctaaatgctgccaatggttcagcgtctg 47126648  T

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