View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6855_high_3 (Length: 568)
Name: NF6855_high_3
Description: NF6855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6855_high_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 514; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 1 - 534
Target Start/End: Complemental strand, 27877015 - 27876482
Alignment:
| Q |
1 |
atgactattccagaagattatgggtgtacccaatcaagaagaagtcagatgtgtttccagtattcaaggcattcaaagcacaaatagagcttgaaactgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27877015 |
atgactattccagaagattatgggtgtacccaatcaagaagaagtcagatgtgtttccagtattcaaggcattcaaagcacaaatagagcttgaaactgg |
27876916 |
T |
|
| Q |
101 |
gaagaaaattaagtgcttgaggacagacaatggaggagaatatgtagatggcgagtttctagcattttgtaaacaagagggtattgtaaggcaattcacg |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27876915 |
gaagaaaattaagtgcttgaggacagataatggaggagaatatgtagatggcgagtttctagcattttgtaaacaagagggtattgtaaggcaattcacg |
27876816 |
T |
|
| Q |
201 |
gttgcacatacacctcagcagaatggtgtggcagagcggatgaatagaactctcctagaaagaacaagagctatgctgaaaacagcgggaatggtcaagt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
27876815 |
gttgcacatacacctcagcagaatggtgtggcagagcggatgaatagaactctcctagaaagaacaagagctatgctgaaaacagcgggaatggccaagt |
27876716 |
T |
|
| Q |
301 |
cattctgggcagaagcagtgaaaaccgtctgttatgtaataaatcgctcaccatcaacggcgattgatttgaagacaccgatggagatgtggaaaggaaa |
400 |
Q |
| |
|
| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27876715 |
cgttctgggcagaagcagtgaaaaccgcctgttatgtaataaatcgctcaccatcaacggcgattgatttgaagacaccgatggagatgtggaaaggaaa |
27876616 |
T |
|
| Q |
401 |
gccagtagattattcttctctgcatgtttttggttgtcctgtgtacgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgt |
500 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27876615 |
gccagtagattattcttctctgcatgtgtttggttgtcctgtgtacgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgt |
27876516 |
T |
|
| Q |
501 |
atcttcttgggttatgctgacaatgttaaggggt |
534 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
27876515 |
atcttcttgggttatgctgacaatgttaaggggt |
27876482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 192 - 394
Target Start/End: Complemental strand, 8481814 - 8481612
Alignment:
| Q |
192 |
caattcacggttgcacatacacctcagcagaatggtgtggcagagcggatgaatagaactctcctagaaagaacaagagctatgctgaaaacagcgggaa |
291 |
Q |
| |
|
|||||||| ||| || |||| ||||| || |||||| | |||||||| |||||| |||||||||||| | |||||||| ||||| || |||||| |||| |
|
|
| T |
8481814 |
caattcacagttccatatacgcctcaacataatggtatagcagagcgattgaataaaactctcctagataaaacaagagttatgcagagaacagcaggaa |
8481715 |
T |
|
| Q |
292 |
tggtcaagtcattctgggcagaagcagtgaaaaccgtctgttatgtaataaatcgctcaccatcaacggcgattgatttgaagacaccgatggagatgtg |
391 |
Q |
| |
|
||| |||||| || | |||| |||| | ||||| | |||||||| || ||||| || |||| ||| || |||| |||||| |||||||||||||| || |
|
|
| T |
8481714 |
tggccaagtcttttttggcaaaagctgcgaaaatggcatgttatgtgatcaatcgatctccataaactgcaattggtttgaaaacaccgatggagatttg |
8481615 |
T |
|
| Q |
392 |
gaa |
394 |
Q |
| |
|
||| |
|
|
| T |
8481614 |
gaa |
8481612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 514; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 1 - 534
Target Start/End: Complemental strand, 48700127 - 48699594
Alignment:
| Q |
1 |
atgactattccagaagattatgggtgtacccaatcaagaagaagtcagatgtgtttccagtattcaaggcattcaaagcacaaatagagcttgaaactgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48700127 |
atgactattccagaagattatgggtgtacccaatcaagaagaagtcagatgtgtttccagtattcaaggcattcaaagcacaaatagagcttgaaactgg |
48700028 |
T |
|
| Q |
101 |
gaagaaaattaagtgcttgaggacagacaatggaggagaatatgtagatggcgagtttctagcattttgtaaacaagagggtattgtaaggcaattcacg |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48700027 |
gaagaaaattaagtgcttgaggacagataatggaggagaatatgtagatggcgagtttctagcattttgtaaacaagagggtattgtaaggcaattcacg |
48699928 |
T |
|
| Q |
201 |
gttgcacatacacctcagcagaatggtgtggcagagcggatgaatagaactctcctagaaagaacaagagctatgctgaaaacagcgggaatggtcaagt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
48699927 |
gttgcacatacacctcagcagaatggtgtggcagagcggatgaatagaactctcctagaaagaacaagagctatgctgaaaacagcgggaatggccaagt |
48699828 |
T |
|
| Q |
301 |
cattctgggcagaagcagtgaaaaccgtctgttatgtaataaatcgctcaccatcaacggcgattgatttgaagacaccgatggagatgtggaaaggaaa |
400 |
Q |
| |
|
| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48699827 |
cgttctgggcagaagcagtgaaaaccgcctgttatgtaataaatcgctcaccatcaacggcgattgatttgaagacaccgatggagatgtggaaaggaaa |
48699728 |
T |
|
| Q |
401 |
gccagtagattattcttctctgcatgtttttggttgtcctgtgtacgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgt |
500 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48699727 |
gccagtagattattcttctctgcatgtgtttggttgtcctgtgtacgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgt |
48699628 |
T |
|
| Q |
501 |
atcttcttgggttatgctgacaatgttaaggggt |
534 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
48699627 |
atcttcttgggttatgctgacaatgttaaggggt |
48699594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 1 - 534
Target Start/End: Original strand, 42267914 - 42268447
Alignment:
| Q |
1 |
atgactattccagaagattatgggtgtacccaatcaagaagaagtcagatgtgtttccagtattcaaggcattcaaagcacaaatagagcttgaaactgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42267914 |
atgactattccagaagattatgggtgtacccaatcaagaagaagtcagatgtgtttccagtattcaaggcattcaaagcacaaatagagcttgaaactgg |
42268013 |
T |
|
| Q |
101 |
gaagaaaattaagtgcttgaggacagacaatggaggagaatatgtagatggcgagtttctagcattttgtaaacaagagggtattgtaaggcaattcacg |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42268014 |
gaagaaaattaagtgcttgaggacagataatggaggagaatatgtagatggcgagtttctagcattttgtaaacaagagggtattgtaaggcaattcacg |
42268113 |
T |
|
| Q |
201 |
gttgcacatacacctcagcagaatggtgtggcagagcggatgaatagaactctcctagaaagaacaagagctatgctgaaaacagcgggaatggtcaagt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
42268114 |
gttgcacatacacctcagcagaatggtgtggcagagcggatgaatagaactctcctagaaagaacaagagctatgctgaaaacagcgggaatggccaagt |
42268213 |
T |
|
| Q |
301 |
cattctgggcagaagcagtgaaaaccgtctgttatgtaataaatcgctcaccatcaacggcgattgatttgaagacaccgatggagatgtggaaaggaaa |
400 |
Q |
| |
|
| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42268214 |
cgttctgggcagaagcagtgaaaaccgcctgttatgtaataaatcgctcaccatcaacggcgattgatttgaagacaccgatggagatgtggaaaggaaa |
42268313 |
T |
|
| Q |
401 |
gccagtagattattcttctctgcatgtttttggttgtcctgtgtacgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgt |
500 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42268314 |
gccagtagattattcttctctgcatgtgtttggttgtcctgtgtatgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgt |
42268413 |
T |
|
| Q |
501 |
atcttcttgggttatgctgacaatgttaaggggt |
534 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
42268414 |
atcttcttgggttatgctgacaatgttaaggggt |
42268447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 1 - 534
Target Start/End: Complemental strand, 30948489 - 30947956
Alignment:
| Q |
1 |
atgactattccagaagattatgggtgtacccaatcaagaagaagtcagatgtgtttccagtattcaaggcattcaaagcacaaatagagcttgaaactgg |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30948489 |
atgactattctagaagattatgggtgtacccaatcaagaagaagtcggatgtgtttccagtattcaaggcattcaaagcacaaatagagcttgaaactgg |
30948390 |
T |
|
| Q |
101 |
gaagaaaattaagtgcttgaggacagacaatggaggagaatatgtagatggcgagtttctagcattttgtaaacaagagggtattgtaaggcaattcacg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30948389 |
gaagaaaattaagtgcttgaggacagacaatggaggagaatatgtagatggcgagtttctagcattttgtaaacaagagggtattgtaaggcaattcacg |
30948290 |
T |
|
| Q |
201 |
gttgcacatacacctcagcagaatggtgtggcagagcggatgaatagaactctcctagaaagaacaagagctatgctgaaaacagcgggaatggtcaagt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
30948289 |
gttgcacatacacctcagcagaatggtgtggcagagcggatgaatagaactctcctagaaagaacaagagctatgctgaaaacagcggaaatggccaagt |
30948190 |
T |
|
| Q |
301 |
cattctgggcagaagcagtgaaaaccgtctgttatgtaataaatcgctcaccatcaacggcgattgatttgaagacaccgatggagatgtggaaaggaaa |
400 |
Q |
| |
|
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
30948189 |
cgttctgggcagaagcagtgaaaaccgcctgttatgtaataaatcgctcaccatcaacgacgattgatttgaagacaccaatggagatgtggaaaggaaa |
30948090 |
T |
|
| Q |
401 |
gccagtagattattcttctctgcatgtttttggttgtcctgtgtacgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
30948089 |
gccagtagattattcttctctgcatgtttttggttgtcctgtgtacgtgatgtacaactcccaagaaagaacgaagttggacccaaagtctaggaaatgt |
30947990 |
T |
|
| Q |
501 |
atcttcttgggttatgctgacaatgttaaggggt |
534 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
30947989 |
atcttcttgggttatgctgacaatgttaaggggt |
30947956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 15 - 534
Target Start/End: Original strand, 2000910 - 2001421
Alignment:
| Q |
15 |
agattatgggtgtacccaatcaagaagaagtcagatgtgtttccagtattcaaggcattcaaagcacaaatagagcttgaaactgggaagaaaattaagt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||| | || ||||||||| | || | ||| |||| |
|
|
| T |
2000910 |
agattatgggtgtacccaatcaagaagaagtcaaatgtgtttacagtattcaaggaattcaaagcacacgtggaacttgaaactagtaaaagaataaagt |
2001009 |
T |
|
| Q |
115 |
gcttgaggacagacaatggaggagaatatgtagatggcgagtttctagcattttgtaaacaagagggtattgtaaggcaattcacggttgcacatacacc |
214 |
Q |
| |
|
|||| || ||| ||||||||| ||||||||||||||| || ||||| | ||||| || |||||| ||| |||||||| ||| ||||||| || |
|
|
| T |
2001010 |
gcttaagaacaaacaatggagcagaatatgtagatggtgactttct--------gcaaacatgaaggtattacaagacaattcacagttccacatacgcc |
2001101 |
T |
|
| Q |
215 |
tcagcagaatggtgtggcagagcggatgaatagaactctcctagaaagaacaagagctatgctgaaaacagcgggaatggtcaagtcattctgggcagaa |
314 |
Q |
| |
|
||| ||||||||||| |||||||||||||||| |||||||||| | ||||||||||| ||| ||| |||| | ||| ||| ||||| |||||||||||| |
|
|
| T |
2001102 |
tcaacagaatggtgtagcagagcggatgaatataactctcctatatagaacaagagccatgttgagaacaacaggagtggctaagtctttctgggcagaa |
2001201 |
T |
|
| Q |
315 |
gcagtgaaaaccgtctgttatgtaataaatcgctcaccatcaacggcgattgatttgaagacaccgatggagatgtggaaaggaaagccagtagattatt |
414 |
Q |
| |
|
|| |||||||| | || ||| || || ||||| || |||||||| || |||| |||||| ||||| |||||||| ||||| ||||||||| ||||||| |
|
|
| T |
2001202 |
gctgtgaaaactgcctattacgtgatcaatcgatctccatcaaccgcaattggtttgaaaacaccaatggagatttggaacggaaagccacctgattatt |
2001301 |
T |
|
| Q |
415 |
cttctctgcatgtttttggttgtcctgtgtacgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgtatcttcttgggtta |
514 |
Q |
| |
|
|||| | |||| || || ||| |||||||| ||| ||||||||||||||||||| || | || |||||||| || || ||||| ||||||||||| |
|
|
| T |
2001302 |
cttccttatatgtgttcggatgtattgtgtacgcaatgaacaactcccaagaaagaacaaaactagatccaaagtctagaaattgtatattcttgggtta |
2001401 |
T |
|
| Q |
515 |
tgctgacaatgttaaggggt |
534 |
Q |
| |
|
||||||||| || ||||||| |
|
|
| T |
2001402 |
tgctgacaacgtgaaggggt |
2001421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 510; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 1 - 534
Target Start/End: Complemental strand, 5821581 - 5821048
Alignment:
| Q |
1 |
atgactattccagaagattatgggtgtacccaatcaagaagaagtcagatgtgtttccagtattcaaggcattcaaagcacaaatagagcttgaaactgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5821581 |
atgactattccagaagattatgggtgtacccaatcaagaagaagtcagatgtgtttccagtattcaaggcattcaaagcacaaatagagcttgaaactgg |
5821482 |
T |
|
| Q |
101 |
gaagaaaattaagtgcttgaggacagacaatggaggagaatatgtagatggcgagtttctagcattttgtaaacaagagggtattgtaaggcaattcacg |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5821481 |
gaagaaaattaagtgcttgaggacagataatggaggagaatatgtagatggcgagtttctagcattttgtaaacaagagggtattgtaaggcaattcacg |
5821382 |
T |
|
| Q |
201 |
gttgcacatacacctcagcagaatggtgtggcagagcggatgaatagaactctcctagaaagaacaagagctatgctgaaaacagcgggaatggtcaagt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5821381 |
gttgcacatacacctcagcagaatggtgtggcagagcggatgaatagaactctcctagaaagaacaagagctatgctgaaaacagcgggaatggccaagt |
5821282 |
T |
|
| Q |
301 |
cattctgggcagaagcagtgaaaaccgtctgttatgtaataaatcgctcaccatcaacggcgattgatttgaagacaccgatggagatgtggaaaggaaa |
400 |
Q |
| |
|
| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5821281 |
cgttctgggcagaagcagtgaaaaccgcctgttatgtaataaatcgctcaccatcaacggcgattgatttgaagacaccgatggagatgtggaaaggaaa |
5821182 |
T |
|
| Q |
401 |
gccagtagattattcttctctgcatgtttttggttgtcctgtgtacgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgt |
500 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5821181 |
gccagtagattattcttctctgcatgtgtttggttgtcctgtgtatgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgt |
5821082 |
T |
|
| Q |
501 |
atcttcttgggttatgctgacaatgttaaggggt |
534 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
5821081 |
atcttcttgggttatgctgacaatgttaaggggt |
5821048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 1 - 534
Target Start/End: Complemental strand, 2815569 - 2815036
Alignment:
| Q |
1 |
atgactattccagaagattatgggtgtacccaatcaagaagaagtcagatgtgtttccagtattcaaggcattcaaagcacaaatagagcttgaaactgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2815569 |
atgactattccagaagattatgggtgtaaccaatcaagaagaagtcagttgtgtttccagtattcaaggcattaaaagcacaaatagagcttgaaactgg |
2815470 |
T |
|
| Q |
101 |
gaagaaaattaagtgcttgaggacagacaatggaggagaatatgtagatggcgagtttctagcattttgtaaacaagagggtattgtaaggcaattcacg |
200 |
Q |
| |
|
||| || |||||||||||||||| ||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2815469 |
gaaaaagattaagtgcttgaggatagataatggaggataatatgtagatgacgagtttctagcattttgtaaacaagagggtattgtaaggcaattcact |
2815370 |
T |
|
| Q |
201 |
gttgcacatacacctcagcagaatggtgtggcagagcggatgaatagaactctcctagaaagaacaagagctatgctgaaaacagcgggaatggtcaagt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2815369 |
gttgcacatacacctcagcagaatggtgtggcagagcggatgaatataactctcctagaaagaacaagagctatgctgaaaacagcgggaatggccaagt |
2815270 |
T |
|
| Q |
301 |
cattctgggcagaagcagtgaaaaccgtctgttatgtaataaatcgctcaccatcaacggcgattgatttgaagacaccgatggagatgtggaaaggaaa |
400 |
Q |
| |
|
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
2815269 |
cgttctgggcagaagcagtgaaaaccgcctgttatgtaataaatcgctcaccatcaacgttgattgatttgaagactcctatggagatgtggaaaggaaa |
2815170 |
T |
|
| Q |
401 |
gccagtagattattcttctctgcatgtttttggttgtcctgtgtacgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgt |
500 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||| | ||||||| |
|
|
| T |
2815169 |
gccagtagattattcttctctacatgtgtttggttgtcctgtgtatgtgatgtacaactctcaagaaagaacaaagttggacccaaagtctaagaaatgt |
2815070 |
T |
|
| Q |
501 |
atcttcttgggttatgctgacaatgttaaggggt |
534 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
2815069 |
atcttcttgggttatgctgacaatgttaaggggt |
2815036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 15 - 523
Target Start/End: Original strand, 42586976 - 42587484
Alignment:
| Q |
15 |
agattatgggtgtacccaatcaagaagaagtcagatgtgtttccagtattcaaggcattcaaagcacaaatagagcttgaaactgggaagaaaattaagt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| | |||||||||| ||||||| ||||| | || ||||||||||| || | ||| |||| |
|
|
| T |
42586976 |
agattatgggtgtacccaatcaagaagaagtcaaatgtgtttaccgtattcaaggaattcaaaccacaagtggaacttgaaactggtaaaagaataaagt |
42587075 |
T |
|
| Q |
115 |
gcttgaggacagacaatggaggagaatatgtagatggcgagtttctagcattttgtaaacaagagggtattgtaaggcaattcacggttgcacatacacc |
214 |
Q |
| |
|
|||| || ||||||||||||||||||||||||||||| || ||| | |||| || ||||| ||||||||| ||| |||||||| ||| ||||||| || |
|
|
| T |
42587076 |
gcttaagaacagacaatggaggagaatatgtagatggtgattttttgacattctgcaaacatgagggtattacaagacaattcacagttccacatacgcc |
42587175 |
T |
|
| Q |
215 |
tcagcagaatggtgtggcagagcggatgaatagaactctcctagaaagaacaagagctatgctgaaaacagcgggaatggtcaagtcattctgggcagaa |
314 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||||||||| |||| | ||||||||| ||| ||| |||||| | | ||| ||||| |||||||||||| |
|
|
| T |
42587176 |
tcaacagaatggtgtagcagagcggatgaatagaactctcttagataaaacaagagccatgttgagaacagcagtagtggctaagtctttctgggcagaa |
42587275 |
T |
|
| Q |
315 |
gcagtgaaaaccgtctgttatgtaataaatcgctcaccatcaacggcgattgatttgaagacaccgatggagatgtggaaaggaaagccagtagattatt |
414 |
Q |
| |
|
|| |||||||||| |||||| || || ||||| || |||||||| || |||| |||| | ||||| |||||||| ||||| ||||||||| ||||||| |
|
|
| T |
42587276 |
gctgtgaaaaccgcctgttacgtgatcaatcgatctccatcaaccgcaattggtttgtaaacaccaatggagatttggaacggaaagccacctgattatt |
42587375 |
T |
|
| Q |
415 |
cttctctgcatgtttttggttgtcctgtgtacgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgtatcttcttgggtta |
514 |
Q |
| |
|
|||| | ||||| || || ||| ||||||||| ||||||||||||||||||||||| ||| | || |||||||| || |||||||| ||||||||||| |
|
|
| T |
42587376 |
cttccttacatgtgttcggatgtactgtgtacgcaatgtacaactcccaagaaagaacaaagctagatccaaagtctagaaaatgtatattcttgggtta |
42587475 |
T |
|
| Q |
515 |
tgctgacaa |
523 |
Q |
| |
|
||||||||| |
|
|
| T |
42587476 |
tgctgacaa |
42587484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 506; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 1 - 534
Target Start/End: Complemental strand, 9442398 - 9441865
Alignment:
| Q |
1 |
atgactattccagaagattatgggtgtacccaatcaagaagaagtcagatgtgtttccagtattcaaggcattcaaagcacaaatagagcttgaaactgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9442398 |
atgactattccagaagattatgggtgtacccaatcaagaagaagtcagatgtgtttccagtattcaaggcattcaaagcacaaatagagcttgaaactgg |
9442299 |
T |
|
| Q |
101 |
gaagaaaattaagtgcttgaggacagacaatggaggagaatatgtagatggcgagtttctagcattttgtaaacaagagggtattgtaaggcaattcacg |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9442298 |
gaagaaaattaagtgcttgaggacagataatggaggagaatatgtagatggcgagtttctagcattttgtaaacaagagggtattgtaaggcaattcacg |
9442199 |
T |
|
| Q |
201 |
gttgcacatacacctcagcagaatggtgtggcagagcggatgaatagaactctcctagaaagaacaagagctatgctgaaaacagcgggaatggtcaagt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9442198 |
gttgcacatacacctcagcagaatggtgtggcagagcggatgaatagaactctcctagaaagaacaagagctatgctgaaaacagcgggaatggccaagt |
9442099 |
T |
|
| Q |
301 |
cattctgggcagaagcagtgaaaaccgtctgttatgtaataaatcgctcaccatcaacggcgattgatttgaagacaccgatggagatgtggaaaggaaa |
400 |
Q |
| |
|
| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9442098 |
cgttctgggcagaagcagtgaaaaccgcctgttatgtaataaatcgctcaccatcaacggtgattgatttgaagacaccgatggagatgtggaaaggaaa |
9441999 |
T |
|
| Q |
401 |
gccagtagattattcttctctgcatgtttttggttgtcctgtgtacgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgt |
500 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9441998 |
gccagtagattattcttctctgcatgtgtttggttgtcctgtgtatgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgt |
9441899 |
T |
|
| Q |
501 |
atcttcttgggttatgctgacaatgttaaggggt |
534 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
9441898 |
atcttcttgggttatgctgacaatgttaaggggt |
9441865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 15 - 523
Target Start/End: Complemental strand, 24596780 - 24596272
Alignment:
| Q |
15 |
agattatgggtgtacccaatcaagaagaagtcagatgtgtttccagtattcaaggcattcaaagcacaaatagagcttgaaactgggaagaaaattaagt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||| | || ||||||||||| || | ||| |||| |
|
|
| T |
24596780 |
agattatgggtgtacccaatcaagaagaagtcaaatgtgtttacagtattcaaggaattcaaagcacaagtggaacttgaaactggtaaaagaataaagt |
24596681 |
T |
|
| Q |
115 |
gcttgaggacagacaatggaggagaatatgtagatggcgagtttctagcattttgtaaacaagagggtattgtaaggcaattcacggttgcacatacacc |
214 |
Q |
| |
|
|||| || ||||||||||||||||||||||||||||| || ||| | |||| || ||||| ||||||||| ||| |||||||| ||| ||||||| || |
|
|
| T |
24596680 |
gcttaagaacagacaatggaggagaatatgtagatggtgattttttgacattctgcaaacatgagggtattacaagacaattcacagttccacatacgcc |
24596581 |
T |
|
| Q |
215 |
tcagcagaatggtgtggcagagcggatgaatagaactctcctagaaagaacaagagctatgctgaaaacagcgggaatggtcaagtcattctgggcagaa |
314 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||||||||| || | | || |||||| ||| ||| |||||| | ||| ||||| |||||||||||| |
|
|
| T |
24596580 |
tcaacagaatggtgtagcagagcggatgaatagaactctcttaaataaaaaaagagccatgttgagaacagcaatagtggctaagtctttctgggcagaa |
24596481 |
T |
|
| Q |
315 |
gcagtgaaaaccgtctgttatgtaataaatcgctcaccatcaacggcgattgatttgaagacaccgatggagatgtggaaaggaaagccagtagattatt |
414 |
Q |
| |
|
|| |||||||||| || ||| || || ||||| || ||||||| || |||| |||||| ||||| |||||||| ||||| ||||||||| ||||||| |
|
|
| T |
24596480 |
gctgtgaaaaccgcctattacgtgatcaatcgatctacatcaaccgcaattggtttgaaaacaccaatggagatttggaacggaaagccacctgattatt |
24596381 |
T |
|
| Q |
415 |
cttctctgcatgtttttggttgtcctgtgtacgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgtatcttcttgggtta |
514 |
Q |
| |
|
|||| | ||||| || || ||| ||||||||| ||||||||||||||||||||||| ||| | || |||||||| || |||||||| ||||||||||| |
|
|
| T |
24596380 |
cttccttacatgtgttcggatgtactgtgtacgcaatgtacaactcccaagaaagaacaaagctagatccaaagtctagaaaatgtatattcttgggtta |
24596281 |
T |
|
| Q |
515 |
tgctgacaa |
523 |
Q |
| |
|
||||||||| |
|
|
| T |
24596280 |
tgctgacaa |
24596272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 502; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 1 - 534
Target Start/End: Original strand, 41720421 - 41720954
Alignment:
| Q |
1 |
atgactattccagaagattatgggtgtacccaatcaagaagaagtcagatgtgtttccagtattcaaggcattcaaagcacaaatagagcttgaaactgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
41720421 |
atgactattccagaagattatgggtgtacccaatcaagaagaagtcggatgtgtttccagtattcaaggcattcaaagcacaaatagagcttgaaactag |
41720520 |
T |
|
| Q |
101 |
gaagaaaattaagtgcttgaggacagacaatggaggagaatatgtagatggcgagtttctagcattttgtaaacaagagggtattgtaaggcaattcacg |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41720521 |
gaagaaaattaagtgcttgaggacagataatggaggagaatatatagatggcgagtttctagcattttgtaaacaagagggtattgtaaggcaattcacg |
41720620 |
T |
|
| Q |
201 |
gttgcacatacacctcagcagaatggtgtggcagagcggatgaatagaactctcctagaaagaacaagagctatgctgaaaacagcgggaatggtcaagt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41720621 |
gttgcacatacacctcagcagaatggtgtggcagagcggatgaatagaactctcctagaaagaacaagagctatgctgaaaacagcgggaatggccaagt |
41720720 |
T |
|
| Q |
301 |
cattctgggcagaagcagtgaaaaccgtctgttatgtaataaatcgctcaccatcaacggcgattgatttgaagacaccgatggagatgtggaaaggaaa |
400 |
Q |
| |
|
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
41720721 |
cgttctgggcagaagcagtgaaaaccgcctgttatgtaataaatcgctcaccatcaacggcgattgatttgaagacaccaatggagatgtggaaaggaaa |
41720820 |
T |
|
| Q |
401 |
gccagtagattattcttctctgcatgtttttggttgtcctgtgtacgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41720821 |
gccagtagattattcttctctgcatgtttttggttgtcctgtgtacgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgt |
41720920 |
T |
|
| Q |
501 |
atcttcttgggttatgctgacaatgttaaggggt |
534 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
41720921 |
atcttcttgggttatgctgacaatgttaaggggt |
41720954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 1 - 534
Target Start/End: Original strand, 34354021 - 34354554
Alignment:
| Q |
1 |
atgactattccagaagattatgggtgtacccaatcaagaagaagtcagatgtgtttccagtattcaaggcattcaaagcacaaatagagcttgaaactgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34354021 |
atgactattccagaagattatgggtgtacccaatcaagaagaagtcggatgtgtttccagtattcaaggcattcaaagcacaaatagagcttgaaactgg |
34354120 |
T |
|
| Q |
101 |
gaagaaaattaagtgcttgaggacagacaatggaggagaatatgtagatggcgagtttctagcattttgtaaacaagagggtattgtaaggcaattcacg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34354121 |
gaagaaaattaagtgcttgaggacagacaatggaggagaatatgtagatggcgagtttctagcattttgtaaacaagagggtattgtaaggcaattcacg |
34354220 |
T |
|
| Q |
201 |
gttgcacatacacctcagcagaatggtgtggcagagcggatgaatagaactctcctagaaagaacaagagctatgctgaaaacagcgggaatggtcaagt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
34354221 |
gttgcacatacacctcagcagaatggtgcggcagagcggatgaatagaactctcctagaaagaacaagagctatgctgaaaacagcaggaatggccaagt |
34354320 |
T |
|
| Q |
301 |
cattctgggcagaagcagtgaaaaccgtctgttatgtaataaatcgctcaccatcaacggcgattgatttgaagacaccgatggagatgtggaaaggaaa |
400 |
Q |
| |
|
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
34354321 |
cgttctgggcagaagcagtgaaaaccgcctgttatgtaataaatcgctcaccatcaacgacaattgatttgaagacaccaatggagatgtggaaaggaaa |
34354420 |
T |
|
| Q |
401 |
gccagtagattattcttctctgcatgtttttggttgtcctgtgtacgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgt |
500 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||| |
|
|
| T |
34354421 |
gccagtagattattcttctctacatgtgtttggttgtcctgtgtacgtgatgtacaactcccaagacagaacgaagttggacccaaagttcagaaaatgt |
34354520 |
T |
|
| Q |
501 |
atcttcttgggttatgctgacaatgttaaggggt |
534 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
34354521 |
atcttcttgggttatgctgacaatgttaaggggt |
34354554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 1 - 534
Target Start/End: Original strand, 827490 - 828023
Alignment:
| Q |
1 |
atgactattccagaagattatgggtgtacccaatcaagaagaagtcagatgtgtttccagtattcaaggcattcaaagcacaaatagagcttgaaactgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
827490 |
atgactattccagaagattatgggtgtacccaatcaagaagaagtcggatgtgtttccagtattcaaggcattcaaagcacaaatagagcttgaaactgg |
827589 |
T |
|
| Q |
101 |
gaagaaaattaagtgcttgaggacagacaatggaggagaatatgtagatggcgagtttctagcattttgtaaacaagagggtattgtaaggcaattcacg |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
827590 |
gaagaaaattaagtgcttgaggacagataatggaggagaatatgtagatggcgagtttctagcattttgtaaacaagagggtattgtaaggcaattcacg |
827689 |
T |
|
| Q |
201 |
gttgcacatacacctcagcagaatggtgtggcagagcggatgaatagaactctcctagaaagaacaagagctatgctgaaaacagcgggaatggtcaagt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
827690 |
gttgcacatacacctcagcagaatggtgtggcagagcggatgaatagaactctcctagaaagaacaagagttatgctgaaaacagcgggaatggccaagt |
827789 |
T |
|
| Q |
301 |
cattctgggcagaagcagtgaaaaccgtctgttatgtaataaatcgctcaccatcaacggcgattgatttgaagacaccgatggagatgtggaaaggaaa |
400 |
Q |
| |
|
| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
827790 |
cgttctgtgcagaagcagtgaaaaccgcctgttatgtaataaatcgctcaccatcaacggcgattgatttgaagacaccgatggagatgtggaaaggaaa |
827889 |
T |
|
| Q |
401 |
gccagtagattattcttctctgcatgtttttggttgtcctgtgtacgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgt |
500 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
827890 |
gccagtagattattcttctctgcatgtgtttggttgtcctgtgtacgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgt |
827989 |
T |
|
| Q |
501 |
atcttcttgggttatgctgacaatgttaaggggt |
534 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
827990 |
atcttcttgggttatgctgacaatgttaaggggt |
828023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 4 - 147
Target Start/End: Complemental strand, 8134850 - 8134716
Alignment:
| Q |
4 |
actattccagaagattatgggtgtacccaatcaagaagaagtcagatgtgtttccagtattcaaggcattcaaagcacaaatagagcttgaaactgggaa |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||| ||| ||||| || ||| |
|
|
| T |
8134850 |
actattccagaagattatgggtgtacccaattaagaagaagtcagatgtgttttcagtattcaa---------agcacaaataaagcgtgaaattgagaa |
8134760 |
T |
|
| Q |
104 |
gaaaattaagtgcttgaggacagacaatggaggagaatatgtag |
147 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8134759 |
gaaaattaagtgcttgaggacagataatggaggagaatatgtag |
8134716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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