View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6855_high_30 (Length: 237)
Name: NF6855_high_30
Description: NF6855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6855_high_30 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 2 - 226
Target Start/End: Original strand, 36393060 - 36393286
Alignment:
| Q |
2 |
atcctctggagaccacaatacaattaaaggcatacacttactgatccttagagtcccagcctgacaagttggcaacctctctcaatgcatacctccactt |
101 |
Q |
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| T |
36393060 |
atcctctggagaccacaatacaattaaaggcatgcacttactgatccttagagtcccagcctgacaagttggcaacctctctcaatgcatacctccactt |
36393159 |
T |
|
| Q |
102 |
ttgtatcttccctttactctcagtaaatttttcttcatg--tttcctaaaagcttcagcaaaattcccctttgattccttacatcggagagattgacgcc |
199 |
Q |
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| T |
36393160 |
ttgtatcttccctttactctcagtgaatttttcttcatgttttttctaaaagcttcagcaaaattcccctttgattccttacatcggagagattgacgcc |
36393259 |
T |
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| Q |
200 |
atagaagattgggaacacttgatgtcc |
226 |
Q |
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||||||||||||||| ||||||||||| |
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| T |
36393260 |
atagaagattgggaaaacttgatgtcc |
36393286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 25 - 226
Target Start/End: Original strand, 36399355 - 36399557
Alignment:
| Q |
25 |
ttaaaggcatacacttactgatccttagagtcccagcctgacaagttggcaacctctctcaatgcatacctccacttttgtatcttccctttactctcag |
124 |
Q |
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|||||||||| |||||||||||||||||||||||| ||||| || |||||||||||||||||||||| |||||| |||| | |||| |||| || ||| |
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| T |
36399355 |
ttaaaggcatgcacttactgatccttagagtcccaccctgagaaattggcaacctctctcaatgcatctctccacctttgcaccttctctttgctttcac |
36399454 |
T |
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| Q |
125 |
taaatttttcttcatgtttcctaaaagcttcagcaaaa-ttcccctttgattccttacatcggagagattgacgccatagaagattgggaacacttgatg |
223 |
Q |
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|||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||| ||| ||| || || ||||||||||||||||| || || |
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| T |
36399455 |
taaatttttcttcatgtttcttaaaagcctcagcaaaacttcccctttgattccttacatcagagggatctacaccgtagaagattgggaacacctgttg |
36399554 |
T |
|
| Q |
224 |
tcc |
226 |
Q |
| |
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||| |
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| T |
36399555 |
tcc |
36399557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 23 - 226
Target Start/End: Original strand, 36408480 - 36408684
Alignment:
| Q |
23 |
aattaaaggcatacacttactgatccttagagtcccagcctgacaagttggcaacctctctcaatgcatacctccacttttgtatcttccctttactctc |
122 |
Q |
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|||||||| ||| ||||||||| || || |||||||| || |||||||||||||||||||||||||||| ||||||||||| | ||| |||| || || |
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| T |
36408480 |
aattaaagccattcacttactggtctttggagtcccaccccgacaagttggcaacctctctcaatgcatctctccacttttgcactttctctttgctttc |
36408579 |
T |
|
| Q |
123 |
agtaaatttttcttcatgtttcctaaaagcttcagcaaaa-ttcccctttgattccttacatcggagagattgacgccatagaagattgggaacacttga |
221 |
Q |
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| T |
36408580 |
actaaatttctcttcatgtttcttaaaagcctcggcaaaacttcccctttgattccttacatcggagggatctacaccatagaagactgggaacacttgt |
36408679 |
T |
|
| Q |
222 |
tgtcc |
226 |
Q |
| |
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||||| |
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| T |
36408680 |
tgtcc |
36408684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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