View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6855_high_35 (Length: 228)

Name: NF6855_high_35
Description: NF6855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6855_high_35
NF6855_high_35
[»] chr7 (31 HSPs)
chr7 (1-223)||(13300320-13300541)
chr7 (56-139)||(11272569-11272648)
chr7 (56-164)||(24339616-24339718)
chr7 (109-179)||(28401102-28401172)
chr7 (106-147)||(35861955-35861996)
chr7 (56-139)||(9408317-9408394)
chr7 (107-163)||(21826248-21826304)
chr7 (69-164)||(27945015-27945104)
chr7 (106-165)||(43027496-43027555)
chr7 (56-145)||(11831425-11831508)
chr7 (106-180)||(15902780-15902854)
chr7 (106-152)||(25481888-25481934)
chr7 (56-145)||(25822648-25822731)
chr7 (58-131)||(26033446-26033513)
chr7 (67-163)||(32094014-32094105)
chr7 (106-139)||(3991323-3991356)
chr7 (106-163)||(26733279-26733336)
chr7 (106-162)||(7328718-7328774)
chr7 (106-138)||(11665467-11665499)
chr7 (106-158)||(18215213-18215265)
chr7 (114-170)||(24105646-24105702)
chr7 (109-164)||(4793837-4793892)
chr7 (64-103)||(18039028-18039067)
chr7 (106-145)||(41020489-41020528)
chr7 (106-160)||(11061103-11061157)
chr7 (106-163)||(5307235-5307292)
chr7 (106-139)||(8234145-8234178)
chr7 (106-163)||(19206025-19206082)
chr7 (63-103)||(21560532-21560572)
chr7 (106-162)||(29763201-29763257)
chr7 (110-162)||(48246844-48246896)
[»] chr6 (28 HSPs)
chr6 (57-164)||(9107354-9107455)
chr6 (57-164)||(16766671-16766772)
chr6 (69-183)||(10770670-10770778)
chr6 (56-163)||(8365502-8365603)
chr6 (73-164)||(34595108-34595193)
chr6 (108-179)||(16833267-16833338)
chr6 (56-145)||(5970091-5970174)
chr6 (106-162)||(1681734-1681790)
chr6 (110-164)||(8777004-8777058)
chr6 (67-164)||(12696298-12696389)
chr6 (106-147)||(7801183-7801224)
chr6 (114-163)||(15489767-15489816)
chr6 (106-145)||(853886-853925)
chr6 (56-145)||(8713972-8714056)
chr6 (106-164)||(426541-426599)
chr6 (60-131)||(9522898-9522963)
chr6 (106-158)||(17841616-17841668)
chr6 (106-164)||(7938090-7938148)
chr6 (57-103)||(21395292-21395338)
chr6 (70-135)||(31384923-31384982)
chr6 (106-164)||(33001316-33001374)
chr6 (106-163)||(7086770-7086827)
chr6 (106-139)||(7930304-7930337)
chr6 (106-163)||(8805599-8805656)
chr6 (106-139)||(25010229-25010262)
chr6 (103-131)||(13632022-13632050)
chr6 (106-138)||(24115874-24115906)
chr6 (106-138)||(34225836-34225868)
[»] chr1 (35 HSPs)
chr1 (56-163)||(47989473-47989573)
chr1 (56-164)||(6612154-6612256)
chr1 (56-164)||(40917725-40917825)
chr1 (106-184)||(48450614-48450692)
chr1 (106-183)||(14359549-14359625)
chr1 (69-138)||(24577182-24577245)
chr1 (56-164)||(5376483-5376585)
chr1 (57-164)||(5944255-5944358)
chr1 (106-145)||(22881643-22881682)
chr1 (56-182)||(28273071-28273191)
chr1 (56-155)||(32461447-32461539)
chr1 (106-145)||(38078688-38078727)
chr1 (68-145)||(113292-113363)
chr1 (106-164)||(398792-398850)
chr1 (106-184)||(5898293-5898371)
chr1 (106-164)||(7918238-7918296)
chr1 (57-103)||(31694694-31694740)
chr1 (62-138)||(6332671-6332740)
chr1 (54-138)||(17778549-17778625)
chr1 (67-138)||(1486703-1486768)
chr1 (106-162)||(16927212-16927268)
chr1 (106-181)||(36878417-36878493)
chr1 (69-139)||(1704988-1705052)
chr1 (73-182)||(19058856-19058960)
chr1 (110-145)||(37598825-37598860)
chr1 (56-103)||(44482259-44482306)
chr1 (74-139)||(40258934-40258993)
chr1 (54-103)||(15449213-15449262)
chr1 (115-160)||(18471276-18471321)
chr1 (106-139)||(23738677-23738710)
chr1 (106-139)||(32434743-32434776)
chr1 (106-158)||(18556483-18556535)
chr1 (106-138)||(22515914-22515946)
chr1 (106-170)||(30359356-30359420)
chr1 (106-158)||(46348410-46348462)
[»] chr8 (17 HSPs)
chr8 (56-164)||(22651950-22652052)
chr8 (56-145)||(2572039-2572122)
chr8 (56-164)||(29510287-29510389)
chr8 (56-145)||(15816112-15816195)
chr8 (56-145)||(29447093-29447176)
chr8 (106-164)||(4298913-4298971)
chr8 (106-164)||(22197769-22197827)
chr8 (56-164)||(4673408-4673510)
chr8 (63-138)||(25566841-25566910)
chr8 (106-162)||(36934646-36934702)
chr8 (106-180)||(20873027-20873101)
chr8 (106-163)||(41838150-41838207)
chr8 (62-145)||(13436953-13437030)
chr8 (110-158)||(36450785-36450833)
chr8 (110-145)||(24196628-24196663)
chr8 (115-162)||(24727790-24727837)
chr8 (106-163)||(3677761-3677818)
[»] scaffold0223 (1 HSPs)
scaffold0223 (65-164)||(20146-20239)
[»] chr5 (27 HSPs)
chr5 (56-163)||(21542005-21542106)
chr5 (56-164)||(13287383-13287484)
chr5 (56-164)||(21522724-21522826)
chr5 (56-164)||(21533290-21533392)
chr5 (56-138)||(39698541-39698617)
chr5 (106-165)||(41995444-41995503)
chr5 (55-139)||(7677704-7677782)
chr5 (73-164)||(21191056-21191141)
chr5 (105-152)||(10298555-10298602)
chr5 (57-139)||(21351889-21351965)
chr5 (73-164)||(15382451-15382538)
chr5 (56-102)||(37328827-37328873)
chr5 (73-145)||(6247615-6247681)
chr5 (106-166)||(15405082-15405140)
chr5 (106-158)||(14674249-14674301)
chr5 (106-162)||(19552570-19552626)
chr5 (106-180)||(6072340-6072415)
chr5 (104-139)||(18316950-18316985)
chr5 (106-145)||(31084316-31084355)
chr5 (106-145)||(33178018-33178057)
chr5 (106-164)||(22013388-22013446)
chr5 (107-164)||(30135287-30135345)
chr5 (107-164)||(3751958-3752014)
chr5 (106-135)||(40131624-40131653)
chr5 (106-139)||(42893359-42893392)
chr5 (106-183)||(2436876-2436954)
chr5 (106-138)||(5894860-5894892)
[»] chr3 (28 HSPs)
chr3 (56-145)||(14209106-14209189)
chr3 (106-183)||(14979136-14979213)
chr3 (56-164)||(41961633-41961735)
chr3 (57-164)||(15796278-15796379)
chr3 (58-145)||(34910310-34910391)
chr3 (106-164)||(3164052-3164110)
chr3 (56-163)||(14216867-14216968)
chr3 (56-163)||(14222996-14223097)
chr3 (56-145)||(4987274-4987357)
chr3 (56-145)||(28812508-28812591)
chr3 (56-164)||(14829664-14829765)
chr3 (108-164)||(10335315-10335371)
chr3 (106-162)||(16000043-16000099)
chr3 (35-145)||(750580-750684)
chr3 (106-145)||(10954945-10954984)
chr3 (106-181)||(26508067-26508142)
chr3 (57-138)||(1509539-1509614)
chr3 (106-164)||(25064883-25064941)
chr3 (71-164)||(28917975-28918062)
chr3 (106-160)||(55401053-55401107)
chr3 (112-181)||(26492238-26492307)
chr3 (106-181)||(40052295-40052364)
chr3 (106-164)||(8587048-8587106)
chr3 (58-103)||(8039820-8039865)
chr3 (106-159)||(11493388-11493441)
chr3 (106-138)||(21257013-21257045)
chr3 (58-102)||(34185108-34185152)
chr3 (106-138)||(51206380-51206412)
[»] chr4 (17 HSPs)
chr4 (56-163)||(19482643-19482744)
chr4 (106-164)||(23293013-23293071)
chr4 (56-145)||(24613684-24613767)
chr4 (106-160)||(12895301-12895355)
chr4 (106-163)||(11651161-11651218)
chr4 (106-163)||(27706204-27706261)
chr4 (54-145)||(50280874-50280960)
chr4 (73-180)||(12797338-12797438)
chr4 (73-164)||(21945477-21945562)
chr4 (106-181)||(49430982-49431058)
chr4 (106-138)||(54580050-54580082)
chr4 (112-163)||(5832727-5832778)
chr4 (106-165)||(14126138-14126197)
chr4 (106-164)||(35158012-35158070)
chr4 (106-164)||(40481611-40481668)
chr4 (56-100)||(30982861-30982905)
chr4 (106-162)||(47263962-47264018)
[»] chr2 (21 HSPs)
chr2 (59-164)||(15657838-15657937)
chr2 (73-164)||(19536397-19536483)
chr2 (57-160)||(36756328-36756425)
chr2 (106-165)||(20539701-20539760)
chr2 (106-163)||(12940962-12941019)
chr2 (106-163)||(30335392-30335449)
chr2 (106-182)||(18841040-18841116)
chr2 (56-131)||(30717513-30717582)
chr2 (106-181)||(30404877-30404952)
chr2 (106-160)||(11670733-11670787)
chr2 (56-102)||(37419773-37419819)
chr2 (106-158)||(21374726-21374778)
chr2 (56-103)||(4882679-4882726)
chr2 (56-103)||(11223846-11223893)
chr2 (106-165)||(21782845-21782904)
chr2 (56-103)||(35056897-35056944)
chr2 (108-180)||(38117188-38117261)
chr2 (56-145)||(26769504-26769587)
chr2 (106-163)||(28412325-28412382)
chr2 (106-162)||(15349816-15349872)
chr2 (106-158)||(37558957-37559009)
[»] scaffold0003 (1 HSPs)
scaffold0003 (56-164)||(241568-241670)
[»] scaffold0027 (1 HSPs)
scaffold0027 (106-164)||(46656-46714)
[»] scaffold0011 (1 HSPs)
scaffold0011 (106-152)||(17776-17822)
[»] scaffold0085 (1 HSPs)
scaffold0085 (106-158)||(26373-26425)
[»] scaffold0018 (1 HSPs)
scaffold0018 (112-164)||(178852-178904)
[»] scaffold0361 (1 HSPs)
scaffold0361 (106-145)||(14523-14562)
[»] scaffold0103 (1 HSPs)
scaffold0103 (106-179)||(51769-51843)
[»] scaffold0019 (1 HSPs)
scaffold0019 (57-102)||(71755-71800)
[»] scaffold0450 (1 HSPs)
scaffold0450 (56-139)||(8618-8695)
[»] scaffold0306 (1 HSPs)
scaffold0306 (106-158)||(13380-13432)
[»] scaffold0152 (1 HSPs)
scaffold0152 (106-158)||(21895-21947)
[»] scaffold0136 (1 HSPs)
scaffold0136 (56-163)||(3832-3933)
[»] scaffold0122 (1 HSPs)
scaffold0122 (105-145)||(8003-8043)
[»] scaffold0053 (1 HSPs)
scaffold0053 (112-164)||(8772-8824)
[»] scaffold0227 (1 HSPs)
scaffold0227 (106-145)||(7338-7377)
[»] scaffold0246 (1 HSPs)
scaffold0246 (106-164)||(19550-19607)
[»] scaffold0021 (1 HSPs)
scaffold0021 (106-164)||(130456-130514)
[»] scaffold0722 (1 HSPs)
scaffold0722 (106-143)||(7059-7096)
[»] scaffold0044 (1 HSPs)
scaffold0044 (58-103)||(53209-53254)


Alignment Details
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 13300541 - 13300320
Alignment:
Q  1 accagacatagttaggtcaagtatttgtctaaaactatgaagcacgggcactccacgtgtccgacaccgacacgacaccgagactggtaattacactgaa 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||| ||||||||||||||||||||||||||     
T  13300541 accagacatagttagttcaagtatttgtctaaaactatgaagcacggacactcctcgtgttcgacaccgacatgacaccgagactggtaattacactga- 13300443  T
Q  101 ttaatattatgtgattttttcaaattattagttgtgtc----gacgtgttattgtctgtgt-cgtgtccatatccctgcttcataggtctagaataagga 195  Q
         ||||| |||||||||||||||||||||| ||||      |||||  |  || |||| ||||| ||||||||||||||||||||||||||||||||    
T  13300442 -----attatatgattttttcaaattattagttatgtcagtatccgtgtcgtgttcggtgtccgtgttcatatccctgcttcataggtctagaataagga 13300348  T
Q  196 ttatatagaaagaatatgatatctatat 223  Q
    ||||||||||||||||||||||||||||    
T  13300347 ttatatagaaagaatatgatatctatat 13300320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 56 - 139
Target Start/End: Original strand, 11272569 - 11272648
Alignment:
Q  56 cgtgtccgacaccgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcg 139  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||    ||||||||||||||||||||| ||||||||||    
T  11272569 cgtgtccgacaccgacacgacaccgacacttgtaattacactgaatta----tatgtgattttttcaaattatcagttgtgtcg 11272648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 56 - 164
Target Start/End: Complemental strand, 24339718 - 24339616
Alignment:
Q  56 cgtgtccgacaccgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgt 155  Q
    |||||||||||||||||||||||||| ||| |||||||||||||      |||||||||||||||||||||||||| ||||||| ||||| | ||||  |    
T  24339718 cgtgtccgacaccgacacgacaccgacacttgtaattacactga------attatgtgattttttcaaattattagctgtgtcggcgtgtcaatgtccat 24339625  T
Q  156 gtcgtgtcc 164  Q
    |||||||||    
T  24339624 gtcgtgtcc 24339616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 179
Target Start/End: Complemental strand, 28401172 - 28401102
Alignment:
Q  109 atgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtccatatccctgcttcat 179  Q
    |||||||||| ||||||||||||| |||||||||||||  || | ||||||||||| ||||| ||||||||    
T  28401172 atgtgattttctcaaattattagtagtgtcgacgtgttggtgcccgtgtcgtgtccgtatccgtgcttcat 28401102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 35861996 - 35861955
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgtta 147  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  35861996 attatgtgattttttcaaattattagttgtgtcggcgtgtta 35861955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 56 - 139
Target Start/End: Original strand, 9408317 - 9408394
Alignment:
Q  56 cgtgtccgacaccgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcg 139  Q
    |||||| |||||||| |||||||||| ||| ||||||||||| |||||      ||||||||||||||||||||| ||||||||    
T  9408317 cgtgtctgacaccgatacgacaccgacacttgtaattacactaaatta------tgtgattttttcaaattattaattgtgtcg 9408394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 21826304 - 21826248
Alignment:
Q  107 ttatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtc 163  Q
    |||||||||||||| ||||||||||| |||||| ||||||| ||||| |||||||||    
T  21826304 ttatgtgatttttttaaattattagtcgtgtcggcgtgttagtgtctatgtcgtgtc 21826248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 69 - 164
Target Start/End: Complemental strand, 27945104 - 27945015
Alignment:
Q  69 gacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtcc 164  Q
    ||||||||||||| ||| |||||||||||||||||      ||| ||||| ||||||||||||| |||||| ||||| | |||| |||||||||||    
T  27945104 gacacgacaccgacacttgtaattacactgaatta------tgtaattttctcaaattattagtggtgtcggcgtgtcagtgtccgtgtcgtgtcc 27945015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 165
Target Start/End: Original strand, 43027496 - 43027555
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtcca 165  Q
    |||||||||||||||||||||||||| || |||| ||||| | |||| ||||||||||||    
T  43027496 attatgtgattttttcaaattattagctgggtcgccgtgtcagtgtccgtgtcgtgtcca 43027555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 56 - 145
Target Start/End: Complemental strand, 11831508 - 11831425
Alignment:
Q  56 cgtgtccgacaccgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcgacgtgt 145  Q
    ||||||||||||||| |||||||  | ||| ||||||||||| |||||      | ||||||||||||||||||||||||||||| ||||    
T  11831508 cgtgtccgacaccgatacgacacgaatacttgtaattacactaaatta------tatgattttttcaaattattagttgtgtcgatgtgt 11831425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 180
Target Start/End: Complemental strand, 15902854 - 15902780
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtccatatccctgcttcata 180  Q
    ||||||||||||| ||||||||||| | |||||| | ||| | |||||||||||||||| ||| | |||||||||    
T  15902854 attatgtgattttatcaaattattattggtgtcggcatgtcagtgtctgtgtcgtgtccgtattcgtgcttcata 15902780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 152
Target Start/End: Complemental strand, 25481934 - 25481888
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtc 152  Q
    |||||||||||||||||||||||||| ||||||| ||||| ||||||    
T  25481934 attatgtgattttttcaaattattagctgtgtcggcgtgtcattgtc 25481888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 56 - 145
Target Start/End: Complemental strand, 25822731 - 25822648
Alignment:
Q  56 cgtgtccgacaccgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcgacgtgt 145  Q
    ||||||||| ||||| |||||||||| ||| ||||||||||||||||   |||      ||||||||||||||||||||||||| |||||    
T  25822731 cgtgtccgataccgatacgacaccgacacttgtaattacactgaattgtgatt------ttttttcaaattattagttgtgtcggcgtgt 25822648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 58 - 131
Target Start/End: Original strand, 26033446 - 26033513
Alignment:
Q  58 tgtccgacaccgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattag 131  Q
    |||| ||||||||||||| ||||| ||| |||||||||||||      ||||||||||||||||||||||||||    
T  26033446 tgtctgacaccgacacgagaccgacacttgtaattacactga------attatgtgattttttcaaattattag 26033513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 67 - 163
Target Start/End: Original strand, 32094014 - 32094105
Alignment:
Q  67 ccgacacgacaccgagactggtaattacactgaattaatattatgtgatttt-ttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtc 163  Q
    ||||||||||||||| | | |||||||||||||||||      ||||||||| ||||||||||||||||||| | | ||||| ||| |||||||||||    
T  32094014 ccgacacgacaccgacatttgtaattacactgaatta------tgtgatttttttcaaattattagttgtgttggcatgttagtgtttgtgtcgtgtc 32094105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 139
Target Start/End: Complemental strand, 3991356 - 3991323
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcg 139  Q
    ||||||||||||||||||||||||||||||||||    
T  3991356 attatgtgattttttcaaattattagttgtgtcg 3991323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 163
Target Start/End: Complemental strand, 26733336 - 26733279
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtc 163  Q
    ||||||||||||| ||||||||||||  |||||||||||| | |||| ||||||||||    
T  26733336 attatgtgattttgtcaaattattagcggtgtcgacgtgtcagtgtccgtgtcgtgtc 26733279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 162
Target Start/End: Original strand, 7328718 - 7328774
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgt 162  Q
    ||||||| ||||| ||||||||||||  || ||||||||||| ||||||||||||||    
T  7328718 attatgttattttctcaaattattagcagtatcgacgtgttaatgtctgtgtcgtgt 7328774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 11665467 - 11665499
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtc 138  Q
    |||||||||||||||||||||||||||||||||    
T  11665467 attatgtgattttttcaaattattagttgtgtc 11665499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 18215213 - 18215265
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtc 158  Q
    |||||||||||||||||||||||||| || |||| ||||||| |||| |||||    
T  18215213 attatgtgattttttcaaattattagctgcgtcggcgtgttagtgtccgtgtc 18215265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 170
Target Start/End: Complemental strand, 24105702 - 24105646
Alignment:
Q  114 attttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtccatatcc 170  Q
    |||||||||||||||||| ||||||| ||||| | |||| ||||||||||| |||||    
T  24105702 attttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccgtatcc 24105646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 164
Target Start/End: Complemental strand, 4793892 - 4793837
Alignment:
Q  109 atgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtcc 164  Q
    |||| |||||||||| ||||||| ||| ||||||||| | ||||||||||||||||    
T  4793892 atgtaattttttcaagttattagctgtatcgacgtgtcagtgtctgtgtcgtgtcc 4793837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 103
Target Start/End: Complemental strand, 18039067 - 18039028
Alignment:
Q  64 acaccgacacgacaccgagactggtaattacactgaatta 103  Q
    |||||||||||||||||| ||| |||||||||||||||||    
T  18039067 acaccgacacgacaccgacacttgtaattacactgaatta 18039028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 145
Target Start/End: Complemental strand, 41020528 - 41020489
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgt 145  Q
    ||||||||||||||  ||||||||||||||||||||||||    
T  41020528 attatgtgatttttgtaaattattagttgtgtcgacgtgt 41020489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 160
Target Start/End: Original strand, 11061103 - 11061157
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgt 160  Q
    |||||||||||||||||||||||||| |||||||  |||| | |||| |||||||    
T  11061103 attatgtgattttttcaaattattagctgtgtcggtgtgtcagtgtccgtgtcgt 11061157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 163
Target Start/End: Complemental strand, 5307292 - 5307235
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtc 163  Q
    ||||||||||||| ||||||||| ||| |||||| ||||| | ||||||| |||||||    
T  5307292 attatgtgattttctcaaattataagtggtgtcggcgtgtcaatgtctgtatcgtgtc 5307235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 139
Target Start/End: Complemental strand, 8234178 - 8234145
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcg 139  Q
    ||||||| ||||||||||||||||||||||||||    
T  8234178 attatgttattttttcaaattattagttgtgtcg 8234145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 163
Target Start/End: Complemental strand, 19206082 - 19206025
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtc 163  Q
    ||||||||||||| ||||||||||||  |||||| ||||||  |||| ||||||||||    
T  19206082 attatgtgattttctcaaattattagcggtgtcggcgtgttggtgtccgtgtcgtgtc 19206025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 103
Target Start/End: Complemental strand, 21560572 - 21560532
Alignment:
Q  63 gacaccgacacgacaccgagactggtaattacactgaatta 103  Q
    |||||||| |||||||||| ||| |||||||||||||||||    
T  21560572 gacaccgatacgacaccgacacttgtaattacactgaatta 21560532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 162
Target Start/End: Original strand, 29763201 - 29763257
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgt 162  Q
    ||||||||||||||||||||||| |||||||| |  |||| | ||||| ||||||||    
T  29763201 attatgtgattttttcaaattataagttgtgttggtgtgtcagtgtctatgtcgtgt 29763257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 162
Target Start/End: Original strand, 48246844 - 48246896
Alignment:
Q  110 tgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgt 162  Q
    ||||||||| |||||||| ||   |||||||||||| ||||||||||||||||    
T  48246844 tgtgattttctcaaattaataacagtgtcgacgtgtcattgtctgtgtcgtgt 48246896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 57 - 164
Target Start/End: Original strand, 9107354 - 9107455
Alignment:
Q  57 gtgtccgacaccgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtg 156  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||       |||||||||||||||||||||| ||||||| ||||||| |||| |||    
T  9107354 gtgtccgacaccgacacgacaccgacacttgtaattacactgaattt------tgtgattttttcaaattattagctgtgtcggcgtgttagtgtccgtg 9107447  T
Q  157 tcgtgtcc 164  Q
    ||||||||    
T  9107448 tcgtgtcc 9107455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 16766772 - 16766671
Alignment:
Q  57 gtgtccgacaccgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtg 156  Q
    ||||||||||||||||||||||||| ||| |||||||||||||      |||||||||||||||||||||||||| ||||||| ||||| | ||||  ||    
T  16766772 gtgtccgacaccgacacgacaccgacacttgtaattacactga------attatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccatg 16766679  T
Q  157 tcgtgtcc 164  Q
    ||||||||    
T  16766678 tcgtgtcc 16766671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 69 - 183
Target Start/End: Original strand, 10770670 - 10770778
Alignment:
Q  69 gacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtccatat 168  Q
    ||||||||||||| ||| |||||||||||||||||      |||||||||||||||||||||||||||| | ||||| | ||||  |||||||||| |||    
T  10770670 gacacgacaccgacacttgtaattacactgaatta------tgtgattttttcaaattattagttgtgttggcgtgtcagtgtccatgtcgtgtccgtat 10770763  T
Q  169 ccctgcttcataggt 183  Q
    || ||||||||||||    
T  10770764 ccgtgcttcataggt 10770778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 56 - 163
Target Start/End: Original strand, 8365502 - 8365603
Alignment:
Q  56 cgtgtccgacaccgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgt 155  Q
    ||||||||| |||||||||||||||| ||| |||||||||| ||||||      |||||| ||||||||||||||||||||||| ||||| | |||| ||    
T  8365502 cgtgtccgataccgacacgacaccgacacttgtaattacaccgaatta------tgtgatattttcaaattattagttgtgtcggcgtgtcagtgtccgt 8365595  T
Q  156 gtcgtgtc 163  Q
    ||||||||    
T  8365596 gtcgtgtc 8365603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 164
Target Start/End: Complemental strand, 34595193 - 34595108
Alignment:
Q  73 cgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtcc 164  Q
    ||||||||| ||| |||||||||||||||||      |||||||||||||||||||||||||||||| ||||| |||||| |||||||||||    
T  34595193 cgacaccgacacttgtaattacactgaatta------tgtgattttttcaaattattagttgtgtcggcgtgtcattgtccgtgtcgtgtcc 34595108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 108 - 179
Target Start/End: Complemental strand, 16833338 - 16833267
Alignment:
Q  108 tatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtccatatccctgcttcat 179  Q
    |||||||||||||||||||||||||||||||| ||||| | |||||||||||||||| ||||  ||||||||    
T  16833338 tatgtgattttttcaaattattagttgtgtcggcgtgtcagtgtctgtgtcgtgtccgtatcagtgcttcat 16833267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 145
Target Start/End: Original strand, 5970091 - 5970174
Alignment:
Q  56 cgtgtccgacaccgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcgacgtgt 145  Q
    |||||||||||||||||||||||| | | | |||||||||||||      |||||||||||||||||||||||||  |||||||||||||    
T  5970091 cgtgtccgacaccgacacgacacccacatttgtaattacactga------attatgtgattttttcaaattattaactgtgtcgacgtgt 5970174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 162
Target Start/End: Complemental strand, 1681790 - 1681734
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgt 162  Q
    |||| ||||||||||||||||||||||||||||| ||||||| ||| ||||||||||    
T  1681790 attacgtgattttttcaaattattagttgtgtcggcgtgttagtgtatgtgtcgtgt 1681734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 110 - 164
Target Start/End: Original strand, 8777004 - 8777058
Alignment:
Q  110 tgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtcc 164  Q
    |||||||||||||||||||||||||||||| ||||| | |||| |||||||||||    
T  8777004 tgtgattttttcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtcc 8777058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 67 - 164
Target Start/End: Complemental strand, 12696389 - 12696298
Alignment:
Q  67 ccgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtcc 164  Q
    |||||||||||| || ||| |||||||||||||||||      ||| |||||||||||||||||| ||||||| ||||| | |||| |||||||||||    
T  12696389 ccgacacgacactgacacttgtaattacactgaatta------tgtaattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtcc 12696298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 7801183 - 7801224
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgtta 147  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  7801183 attatgtgattttttcaaattattagttgtgtcggcgtgtta 7801224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 163
Target Start/End: Original strand, 15489767 - 15489816
Alignment:
Q  114 attttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtc 163  Q
    |||||||||||||||||||||||||||||||||| |||| |||| |||||    
T  15489767 attttttcaaattattagttgtgtcgacgtgttagtgtccgtgttgtgtc 15489816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 145
Target Start/End: Original strand, 853886 - 853925
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgt 145  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  853886 attatgtgattttttcaaattattagttgtgtcggcgtgt 853925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 145
Target Start/End: Complemental strand, 8714056 - 8713972
Alignment:
Q  56 cgtgtccgacaccgacacgacaccgagactggtaattacactgaattaatattatgtga-ttttttcaaattattagttgtgtcgacgtgt 145  Q
    |||||||||||||||||||||||| | | | |||||||||||||      ||||||||| ||||||||||||||||  |||||||||||||    
T  8714056 cgtgtccgacaccgacacgacacccacatttgtaattacactga------attatgtgatttttttcaaattattaactgtgtcgacgtgt 8713972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 164
Target Start/End: Original strand, 426541 - 426599
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtcc 164  Q
    |||||||||||||||||||||||||  ||||||| ||||| | |||| |||||||||||    
T  426541 attatgtgattttttcaaattattaactgtgtcggcgtgtcagtgtccgtgtcgtgtcc 426599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 131
Target Start/End: Complemental strand, 9522963 - 9522898
Alignment:
Q  60 tccgacaccgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattag 131  Q
    |||||||||||||| ||||||| ||| |||||||||||||      ||||||||||||||| ||||||||||    
T  9522963 tccgacaccgacacaacaccgacacttgtaattacactga------attatgtgatttttttaaattattag 9522898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 17841616 - 17841668
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtc 158  Q
    |||||||||||||||||||||||||| ||||||| ||||| | |||| |||||    
T  17841616 attatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtc 17841668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 164
Target Start/End: Complemental strand, 7938148 - 7938090
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtcc 164  Q
    ||||| |||||||||||||||||||| ||||||| ||||| | ||||  ||||||||||    
T  7938148 attatatgattttttcaaattattagctgtgtcggcgtgtcagtgtccatgtcgtgtcc 7938090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 103
Target Start/End: Original strand, 21395292 - 21395338
Alignment:
Q  57 gtgtccgacaccgacacgacaccgagactggtaattacactgaatta 103  Q
    ||||||||||| ||||||||||||| ||| ||||||||||| |||||    
T  21395292 gtgtccgacactgacacgacaccgacacttgtaattacactaaatta 21395338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 135
Target Start/End: Complemental strand, 31384982 - 31384923
Alignment:
Q  70 acacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgt 135  Q
    ||||||||| || ||| |||||||||||||||||      ||||||||||||||||||||||||||    
T  31384982 acacgacactgacacttgtaattacactgaatta------tgtgattttttcaaattattagttgt 31384923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 164
Target Start/End: Original strand, 33001316 - 33001374
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtcc 164  Q
    ||||||||||||||||||||||||||  |||||| ||||| |||| | |||| ||||||    
T  33001316 attatgtgattttttcaaattattagcagtgtcggcgtgtcattgaccgtgttgtgtcc 33001374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 163
Target Start/End: Complemental strand, 7086827 - 7086770
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtc 163  Q
    ||||||||||||| ||||||||||||  ||| ||||||||   |||||||||||||||    
T  7086827 attatgtgattttctcaaattattagcagtgccgacgtgtcggtgtctgtgtcgtgtc 7086770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 139
Target Start/End: Complemental strand, 7930337 - 7930304
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcg 139  Q
    ||||||||||||||||||||||||| ||||||||    
T  7930337 attatgtgattttttcaaattattaattgtgtcg 7930304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 163
Target Start/End: Original strand, 8805599 - 8805656
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtc 163  Q
    ||||||||||||| ||||||||||||  ||| ||||||||   |||||||||||||||    
T  8805599 attatgtgattttctcaaattattagcagtgccgacgtgtcggtgtctgtgtcgtgtc 8805656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 139
Target Start/End: Original strand, 25010229 - 25010262
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcg 139  Q
    |||||||||||||||||||||||||| |||||||    
T  25010229 attatgtgattttttcaaattattagctgtgtcg 25010262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 131
Target Start/End: Original strand, 13632022 - 13632050
Alignment:
Q  103 aatattatgtgattttttcaaattattag 131  Q
    |||||||||||||||||||||||||||||    
T  13632022 aatattatgtgattttttcaaattattag 13632050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 24115874 - 24115906
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtc 138  Q
    ||||||||||||||| |||||||||||||||||    
T  24115874 attatgtgattttttgaaattattagttgtgtc 24115906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 34225836 - 34225868
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtc 138  Q
    |||||| ||||||||||||||||||||||||||    
T  34225836 attatgcgattttttcaaattattagttgtgtc 34225868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 56 - 163
Target Start/End: Complemental strand, 47989573 - 47989473
Alignment:
Q  56 cgtgtccgacaccgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgt 155  Q
    |||||||||||||||||||||||||| ||| |||||||||||||      ||||||||||||||| ||||||||| |||||||| ||||| | |||||||    
T  47989573 cgtgtccgacaccgacacgacaccgacacttgtaattacactga------attatgtgatttttttaaattatta-ttgtgtcggcgtgtcagtgtctgt 47989481  T
Q  156 gtcgtgtc 163  Q
    ||||||||    
T  47989480 gtcgtgtc 47989473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 56 - 164
Target Start/End: Original strand, 6612154 - 6612256
Alignment:
Q  56 cgtgtccgacaccgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgt 155  Q
    ||||||||||| |||||||||||||| ||| |||||||||||||      ||||||| |||||||||||||||||  ||| ||| ||||| |||||| ||    
T  6612154 cgtgtccgacatcgacacgacaccgacacttgtaattacactga------attatgtaattttttcaaattattaactgtatcggcgtgtcattgtccgt 6612247  T
Q  156 gtcgtgtcc 164  Q
    |||||||||    
T  6612248 gtcgtgtcc 6612256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 56 - 164
Target Start/End: Complemental strand, 40917825 - 40917725
Alignment:
Q  56 cgtgtccgacaccgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgt 155  Q
    ||||||| |||||||||||||||||||||| ||||||||||| |||        |||||||||||||||||||||| ||||||| ||||| | | || ||    
T  40917825 cgtgtccaacaccgacacgacaccgagacttgtaattacacttaat--------tgtgattttttcaaattattagctgtgtcggcgtgtcagtatccgt 40917734  T
Q  156 gtcgtgtcc 164  Q
    |||||||||    
T  40917733 gtcgtgtcc 40917725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 106 - 184
Target Start/End: Original strand, 48450614 - 48450692
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtccatatccctgcttcataggtc 184  Q
    ||||||| |||||||||||||||||| ||||| | ||||| | |||| ||||||||||| ||||| |||||||||||||    
T  48450614 attatgttattttttcaaattattagctgtgttggcgtgtcagtgtccgtgtcgtgtccgtatccatgcttcataggtc 48450692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 106 - 183
Target Start/End: Original strand, 14359549 - 14359625
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtccatatccctgcttcataggt 183  Q
    ||||||||||||| |||||||||||| ||||||| |||||   |||||||||||||||| ||||| ||||||||||||    
T  14359549 attatgtgatttt-tcaaattattagctgtgtcggcgtgtccgtgtctgtgtcgtgtccgtatccgtgcttcataggt 14359625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 69 - 138
Target Start/End: Original strand, 24577182 - 24577245
Alignment:
Q  69 gacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtc 138  Q
    ||||||||||||| ||| |||||||||||||||||      |||||||||||||||||||||||||||||    
T  24577182 gacacgacaccgacacttgtaattacactgaatta------tgtgattttttcaaattattagttgtgtc 24577245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 164
Target Start/End: Original strand, 5376483 - 5376585
Alignment:
Q  56 cgtgtccgacaccgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgt 155  Q
    ||||||||||| |||||||||||||| |||  ||||||||||||      ||||||| ||||| | ||||||||||  |||||| ||||||| |||| ||    
T  5376483 cgtgtccgacatcgacacgacaccgacacttttaattacactga------attatgttattttcttaaattattagcggtgtcggcgtgttagtgtccgt 5376576  T
Q  156 gtcgtgtcc 164  Q
    |||||||||    
T  5376577 gtcgtgtcc 5376585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 5944358 - 5944255
Alignment:
Q  57 gtgtccgacaccgacacgacaccgagactggtaattacactgaattaatattatgtgatttttt--caaattattagttgtgtcgacgtgttattgtctg 154  Q
    ||||||| || |||||||||||||| |||  ||||||||||||||||      |||||||||||  ||||||||||| |||| || ||||| | ||||||    
T  5944358 gtgtccgtcatcgacacgacaccgacacttataattacactgaatta------tgtgattttttttcaaattattagctgtggcggcgtgtcagtgtctg 5944265  T
Q  155 tgtcgtgtcc 164  Q
    ||||||||||    
T  5944264 tgtcgtgtcc 5944255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 145
Target Start/End: Original strand, 22881643 - 22881682
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgt 145  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  22881643 attatgtgattttttcaaattattagttgtgtcggcgtgt 22881682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 182
Target Start/End: Original strand, 28273071 - 28273191
Alignment:
Q  56 cgtgtccgacaccgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgt 155  Q
    ||||||||||| ||| | |||||||| ||| |||||||||||||||||      | |||||||||||||| ||||||||||||  | ||| | ||||  |    
T  28273071 cgtgtccgacatcgataggacaccgacacttgtaattacactgaatta------tatgattttttcaaatgattagttgtgtcagcatgtcagtgtcctt 28273164  T
Q  156 gtcgtgtccatatccctgcttcatagg 182  Q
    ||| ||||| ||||| |||||||||||    
T  28273165 gtcatgtccgtatccgtgcttcatagg 28273191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 155
Target Start/End: Original strand, 32461447 - 32461539
Alignment:
Q  56 cgtgtccgacaccgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgt 155  Q
    |||||||||||||||||| ||||| | ||| |||||||||     |||| ||||||||||||||||||||||||||||||| || ||||| | |||||||    
T  32461447 cgtgtccgacaccgacac-acaccaacacttgtaattaca-----ttaa-attatgtgattttttcaaattattagttgtgccggcgtgtcactgtctgt 32461539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 145
Target Start/End: Original strand, 38078688 - 38078727
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgt 145  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  38078688 attatgtgattttttcaaattattagctgtgtcgacgtgt 38078727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 68 - 145
Target Start/End: Complemental strand, 113363 - 113292
Alignment:
Q  68 cgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcgacgtgt 145  Q
    |||||||||||| | ||| |||||||||||||||||      |||||||||||||||||||||| ||||||| |||||    
T  113363 cgacacgacacctacacttgtaattacactgaatta------tgtgattttttcaaattattagctgtgtcggcgtgt 113292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 164
Target Start/End: Original strand, 398792 - 398850
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtcc 164  Q
    ||||||||||||||||||||||||||  |||||| ||||| | |||| |||||||||||    
T  398792 attatgtgattttttcaaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtcc 398850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 184
Target Start/End: Original strand, 5898293 - 5898371
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtccatatccctgcttcataggtc 184  Q
    ||||||||||||||||| ||||||||  |||||| ||| | | |||||||||| ||||| ||||| |||| ||||||||    
T  5898293 attatgtgattttttcagattattagcggtgtcggcgtctcagtgtctgtgtcatgtccgtatccgtgctacataggtc 5898371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 164
Target Start/End: Original strand, 7918238 - 7918296
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtcc 164  Q
    ||||||||||||| |||||||||||||  ||||  ||||| ||||||||||||||||||    
T  7918238 attatgtgattttctcaaattattagtgatgtcagcgtgtcattgtctgtgtcgtgtcc 7918296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 57 - 103
Target Start/End: Original strand, 31694694 - 31694740
Alignment:
Q  57 gtgtccgacaccgacacgacaccgagactggtaattacactgaatta 103  Q
    ||||||||||||||||||||||||| ||| ||||||| |||||||||    
T  31694694 gtgtccgacaccgacacgacaccgacacttgtaattatactgaatta 31694740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 138
Target Start/End: Complemental strand, 6332740 - 6332671
Alignment:
Q  62 cgacaccgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtc 138  Q
    ||||||| |||||||||||| ||| |||||||||||||      ||||||||| |||||||||||||||||||||||    
T  6332740 cgacaccaacacgacaccgatacttgtaattacactga------attatgtga-tttttcaaattattagttgtgtc 6332671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 138
Target Start/End: Complemental strand, 17778625 - 17778549
Alignment:
Q  54 cacgtgtc-cgacaccgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtc 138  Q
    |||||||| |||||||||||||||||||| ||| ||||||||||||         |||||||||||||||||||||||| ||||||    
T  17778625 cacgtgtcgcgacaccgacacgacaccgacacttgtaattacactg---------tatgtgattttttcaaattattagctgtgtc 17778549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 138
Target Start/End: Original strand, 1486703 - 1486768
Alignment:
Q  67 ccgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtc 138  Q
    ||||||||||||||| |||  ||||||||||||||||      |||||||||||||||||||||| ||||||    
T  1486703 ccgacacgacaccgacacttataattacactgaatta------tgtgattttttcaaattattagctgtgtc 1486768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 162
Target Start/End: Original strand, 16927212 - 16927268
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgt 162  Q
    ||||| |||||||||||||||||||| | || |||||||| | ||||||||||||||    
T  16927212 attatatgattttttcaaattattagctatgccgacgtgtcagtgtctgtgtcgtgt 16927268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 181
Target Start/End: Complemental strand, 36878493 - 36878417
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgt-cgtgtccatatccctgcttcatag 181  Q
    ||||||||||||| ||||||||||||  |||||| ||||| | ||||| ||| ||||||| ||||| ||||||||||    
T  36878493 attatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtctatgtccgtgtccgtatccgtgcttcatag 36878417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 139
Target Start/End: Original strand, 1704988 - 1705052
Alignment:
Q  69 gacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcg 139  Q
    ||||||||||||| ||| |||||||| ||||||||      |||||||||||||||||||||| |||||||    
T  1704988 gacacgacaccgacacttgtaattaccctgaatta------tgtgattttttcaaattattagatgtgtcg 1705052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 182
Target Start/End: Original strand, 19058856 - 19058960
Alignment:
Q  73 cgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcgacgtgttat-tgtctgtgtcgtgtccatatccc 171  Q
    ||||||||| ||| |||||||||||||||||      ||| || |||| |||||||||| ||||||| ||||| |  ||| |||||||||||| |||||     
T  19058856 cgacaccgacacttgtaattacactgaatta------tgttatctttttaaattattagctgtgtcggcgtgtcaagtgtgtgtgtcgtgtccgtatccg 19058949  T
Q  172 tgcttcatagg 182  Q
    |||||||||||    
T  19058950 tgcttcatagg 19058960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 145
Target Start/End: Complemental strand, 37598860 - 37598825
Alignment:
Q  110 tgtgattttttcaaattattagttgtgtcgacgtgt 145  Q
    |||||||||||||||||||||||||||||| |||||    
T  37598860 tgtgattttttcaaattattagttgtgtcggcgtgt 37598825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 103
Target Start/End: Complemental strand, 44482306 - 44482259
Alignment:
Q  56 cgtgtccgacaccgacacgacaccgagactggtaattacactgaatta 103  Q
    |||||||||||||||||||||||||| ||   ||||||||||||||||    
T  44482306 cgtgtccgacaccgacacgacaccgacacatataattacactgaatta 44482259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 139
Target Start/End: Original strand, 40258934 - 40258993
Alignment:
Q  74 gacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcg 139  Q
    |||||||| ||| |||||||||||||||||      ||||||||||||||||||||| ||||||||    
T  40258934 gacaccgacacttgtaattacactgaatta------tgtgattttttcaaattattaattgtgtcg 40258993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 15449213 - 15449262
Alignment:
Q  54 cacgtgtccgacaccgacacgacaccgagactggtaattacactgaatta 103  Q
    ||||||||||||||||| ||||||| || ||| ||||||||||| |||||    
T  15449213 cacgtgtccgacaccgatacgacacagacacttgtaattacactaaatta 15449262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 160
Target Start/End: Complemental strand, 18471321 - 18471276
Alignment:
Q  115 ttttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgt 160  Q
    ||||||||||||||||| |||||||||| || |||||| |||||||    
T  18471321 ttttttcaaattattagctgtgtcgacgggtcattgtccgtgtcgt 18471276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 139
Target Start/End: Complemental strand, 23738710 - 23738677
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcg 139  Q
    |||||||||||||||||||||||||| |||||||    
T  23738710 attatgtgattttttcaaattattagctgtgtcg 23738677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 139
Target Start/End: Original strand, 32434743 - 32434776
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcg 139  Q
    ||||||||| ||||||||||||||||||||||||    
T  32434743 attatgtgactttttcaaattattagttgtgtcg 32434776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 18556483 - 18556535
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtc 158  Q
    |||||||||| ||||||||||||||| ||||||| ||||| | |||| |||||    
T  18556483 attatgtgatattttcaaattattagctgtgtcggcgtgtcagtgtccgtgtc 18556535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 22515914 - 22515946
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtc 138  Q
    |||||||||||||||||||||||||| ||||||    
T  22515914 attatgtgattttttcaaattattagctgtgtc 22515946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 170
Target Start/End: Complemental strand, 30359420 - 30359356
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtccatatcc 170  Q
    ||||||||||||||||||||||| ||||||| ||  |||| | |||||||  ||||||| |||||    
T  30359420 attatgtgattttttcaaattatcagttgtgccggtgtgtcagtgtctgtcccgtgtccgtatcc 30359356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 46348410 - 46348462
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtc 158  Q
    ||||| |||||||||||||||||||| ||||||| ||||| | |||| |||||    
T  46348410 attatatgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtc 46348462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 56 - 164
Target Start/End: Complemental strand, 22652052 - 22651950
Alignment:
Q  56 cgtgtccgacaccgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgt 155  Q
    |||||||||||||||||||||||||| ||| ||||||| | |||||||      |||||||||||||||||||||| ||||||| ||||| | |||| ||    
T  22652052 cgtgtccgacaccgacacgacaccgacacttgtaattatattgaatta------tgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgt 22651959  T
Q  156 gtcgtgtcc 164  Q
    |||||||||    
T  22651958 gtcgtgtcc 22651950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 56 - 145
Target Start/End: Original strand, 2572039 - 2572122
Alignment:
Q  56 cgtgtccgacaccgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcgacgtgt 145  Q
    |||||||||||| ||||||||||||| ||| ||||||||||| |||||      |||||||||||||||||||||| |||||||||||||    
T  2572039 cgtgtccgacacagacacgacaccgacacttgtaattacactaaatta------tgtgattttttcaaattattaggtgtgtcgacgtgt 2572122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 56 - 164
Target Start/End: Original strand, 29510287 - 29510389
Alignment:
Q  56 cgtgtccgacaccgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgt 155  Q
    |||||||||||||||||| ||||||| ||| ||||||| ||||||||       |||||||||||||||||||||| ||||||| ||||| | |||| ||    
T  29510287 cgtgtccgacaccgacactacaccgacacttgtaattatactgaattt------tgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgt 29510380  T
Q  156 gtcgtgtcc 164  Q
    |||||||||    
T  29510381 gtcgtgtcc 29510389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 145
Target Start/End: Original strand, 15816112 - 15816195
Alignment:
Q  56 cgtgtccgacaccgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcgacgtgt 145  Q
    ||||||||||||| |||||||||||| |||  |||||||||| |||||      |||||||||||||||||||||||||||||| |||||    
T  15816112 cgtgtccgacaccaacacgacaccgacacttataattacactaaatta------tgtgattttttcaaattattagttgtgtcggcgtgt 15816195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 145
Target Start/End: Original strand, 29447093 - 29447176
Alignment:
Q  56 cgtgtccgacaccgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcgacgtgt 145  Q
    ||||||||||||||||| |||||||| ||| ||| ||||| |||||||      ||||||||| ||||||||||||||||||||||||||    
T  29447093 cgtgtccgacaccgacatgacaccgacacttgtagttacattgaatta------tgtgattttctcaaattattagttgtgtcgacgtgt 29447176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 164
Target Start/End: Original strand, 4298913 - 4298971
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtcc 164  Q
    |||||||||||||||||||||||||  ||||||| ||||||| | ||||||||||||||    
T  4298913 attatgtgattttttcaaattattaactgtgtcggcgtgttagtatctgtgtcgtgtcc 4298971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 164
Target Start/End: Original strand, 22197769 - 22197827
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtcc 164  Q
    ||||||||| |||||||||||||||| ||||| | ||||||| ||||||||||||||||    
T  22197769 attatgtgaatttttcaaattattagctgtgttggcgtgttagtgtctgtgtcgtgtcc 22197827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 56 - 164
Target Start/End: Original strand, 4673408 - 4673510
Alignment:
Q  56 cgtgtccgacaccgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgt 155  Q
    ||||||||||| | ||| ||||| || ||| ||||||||||||||||    |||||  |||||||||||||||||  ||||||| ||||| | |||||||    
T  4673408 cgtgtccgacatcaacaagacactgatacttgtaattacactgaatt----ttatg--attttttcaaattattatctgtgtcggcgtgtcagtgtctgt 4673501  T
Q  156 gtcgtgtcc 164  Q
    |||||||||    
T  4673502 gtcgtgtcc 4673510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 138
Target Start/End: Complemental strand, 25566910 - 25566841
Alignment:
Q  63 gacaccgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtc 138  Q
    |||||| |||||||||||| ||| |||||||||||||||||      |||||||||||||||||||||| ||||||    
T  25566910 gacaccaacacgacaccgacacttgtaattacactgaatta------tgtgattttttcaaattattagctgtgtc 25566841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 106 - 162
Target Start/End: Complemental strand, 36934702 - 36934646
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgt 162  Q
    |||||||||||||||| |||||||||  |||||||||||||| |||| |||||||||    
T  36934702 attatgtgattttttcgaattattagcggtgtcgacgtgttagtgtccgtgtcgtgt 36934646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 180
Target Start/End: Complemental strand, 20873101 - 20873027
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtccatatccctgcttcata 180  Q
    |||||||||||||||||||||||||  | ||||| ||||| | |||| ||||||||||| ||| | |||||||||    
T  20873101 attatgtgattttttcaaattattatctatgtcggcgtgtcagtgtccgtgtcgtgtccgtattcgtgcttcata 20873027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 163
Target Start/End: Original strand, 41838150 - 41838207
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtc 163  Q
    ||||||||||||||| |||||||||| ||||||||||||| | |||| || |||||||    
T  41838150 attatgtgatttttttaaattattagctgtgtcgacgtgtcagtgtccgtatcgtgtc 41838207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 145
Target Start/End: Original strand, 13436953 - 13437030
Alignment:
Q  62 cgacaccgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcgacgtgt 145  Q
    |||||||||||||||||||| ||| || |||||  |||||||      |||||||||||||||||||||| ||||||| |||||    
T  13436953 cgacaccgacacgacaccgacacttgttattaccatgaatta------tgtgattttttcaaattattagctgtgtcggcgtgt 13437030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 36450785 - 36450833
Alignment:
Q  110 tgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtc 158  Q
    |||||||||||||||||||||||||||||| ||||| | |||| |||||    
T  36450785 tgtgattttttcaaattattagttgtgtcggcgtgtcagtgtccgtgtc 36450833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 145
Target Start/End: Original strand, 24196628 - 24196663
Alignment:
Q  110 tgtgattttttcaaattattagttgtgtcgacgtgt 145  Q
    |||||||||||||||||||||||||||||| |||||    
T  24196628 tgtgattttttcaaattattagttgtgtcggcgtgt 24196663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 162
Target Start/End: Original strand, 24727790 - 24727837
Alignment:
Q  115 ttttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgt 162  Q
    ||||||||||||||||||||||| ||||||| | ||| ||||||||||    
T  24727790 ttttttcaaattattagttgtgttgacgtgtcagtgtatgtgtcgtgt 24727837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 163
Target Start/End: Complemental strand, 3677818 - 3677761
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtc 163  Q
    ||||||||||||||| ||||||||| ||||||||| |||| | | || ||||||||||    
T  3677818 attatgtgattttttaaaattattaattgtgtcgatgtgtcagtatccgtgtcgtgtc 3677761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 65 - 164
Target Start/End: Complemental strand, 20239 - 20146
Alignment:
Q  65 caccgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtcc 164  Q
    |||||||||||||| || ||| |||||||||||||||||      |||||||||||||||||||||| ||||||| ||||| |||||| |||||||||||    
T  20239 caccgacacgacactgacacttgtaattacactgaatta------tgtgattttttcaaattattagctgtgtcggcgtgtcattgtccgtgtcgtgtcc 20146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 56 - 163
Target Start/End: Complemental strand, 21542106 - 21542005
Alignment:
Q  56 cgtgtccgacaccgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgt 155  Q
    |||||||||||||||||||||||||| ||| |||||||||||||      ||||||| || |||| |||||||||||||||||| | ||| | |||||||    
T  21542106 cgtgtccgacaccgacacgacaccgacacttgtaattacactga------attatgttatctttttaaattattagttgtgtcggcatgtcaatgtctgt 21542013  T
Q  156 gtcgtgtc 163  Q
    ||||||||    
T  21542012 gtcgtgtc 21542005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 56 - 164
Target Start/End: Original strand, 13287383 - 13287484
Alignment:
Q  56 cgtgtccgacaccgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgt 155  Q
    |||||||||||  ||||||||||||| ||| ||| |||||||||||||      |||||||||||||||||||||  ||||||||||||||| |||| ||    
T  13287383 cgtgtccgacag-gacacgacaccgacacttgtagttacactgaatta------tgtgattttttcaaattattatctgtgtcgacgtgttagtgtccgt 13287475  T
Q  156 gtcgtgtcc 164  Q
    |||||||||    
T  13287476 gtcgtgtcc 13287484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 56 - 164
Target Start/End: Complemental strand, 21522826 - 21522724
Alignment:
Q  56 cgtgtccgacaccgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgt 155  Q
    |||||||||||||||||||||||||| | | |||||||||||||      ||||||| ||||||| |||||||||| ||||||| ||||| | |||| ||    
T  21522826 cgtgtccgacaccgacacgacaccgacaattgtaattacactga------attatgttattttttaaaattattagctgtgtcggcgtgtcagtgtccgt 21522733  T
Q  156 gtcgtgtcc 164  Q
    |||||||||    
T  21522732 gtcgtgtcc 21522724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 56 - 164
Target Start/End: Complemental strand, 21533392 - 21533290
Alignment:
Q  56 cgtgtccgacaccgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgt 155  Q
    |||||||||||||||||||||||||| | | |||||||||||||      ||||||| ||||||| |||||||||| ||||||| ||||| | |||| ||    
T  21533392 cgtgtccgacaccgacacgacaccgacaattgtaattacactga------attatgttattttttaaaattattagctgtgtcggcgtgtcagtgtccgt 21533299  T
Q  156 gtcgtgtcc 164  Q
    |||||||||    
T  21533298 gtcgtgtcc 21533290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 56 - 138
Target Start/End: Complemental strand, 39698617 - 39698541
Alignment:
Q  56 cgtgtccgacaccgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtc 138  Q
    ||||||||||||||||||||||| || ||| |||||||||||||      |||||||||||||||||||||||||| ||||||    
T  39698617 cgtgtccgacaccgacacgacactgacacttgtaattacactga------attatgtgattttttcaaattattagctgtgtc 39698541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 106 - 165
Target Start/End: Complemental strand, 41995503 - 41995444
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtcca 165  Q
    |||||||||||||||| ||||||||||||||||| ||||| | |||||||||||| ||||    
T  41995503 attatgtgattttttcgaattattagttgtgtcggcgtgtcagtgtctgtgtcgtatcca 41995444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 139
Target Start/End: Complemental strand, 7677782 - 7677704
Alignment:
Q  55 acgtgtccgacaccgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcg 139  Q
    ||||||| ||||||||||||||||||| |||  ||||| ||||||||||      |||||||||||||||||||||| |||||||    
T  7677782 acgtgtcagacaccgacacgacaccgacacttctaattgcactgaatta------tgtgattttttcaaattattagctgtgtcg 7677704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 164
Target Start/End: Original strand, 21191056 - 21191141
Alignment:
Q  73 cgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtcc 164  Q
    ||||||||| ||| |||||||||||||||||      |||||||||||||||||||||| ||||||| | ||| | |||| |||||||||||    
T  21191056 cgacaccgacacttgtaattacactgaatta------tgtgattttttcaaattattagctgtgtcggcatgtcagtgtccgtgtcgtgtcc 21191141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 152
Target Start/End: Complemental strand, 10298602 - 10298555
Alignment:
Q  105 tattatgtgattttttcaaattattagttgtgtcgacgtgttattgtc 152  Q
    |||||||||| |||||||||||||||||||||||| ||||||| ||||    
T  10298602 tattatgtgactttttcaaattattagttgtgtcggcgtgttagtgtc 10298555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 139
Target Start/End: Original strand, 21351889 - 21351965
Alignment:
Q  57 gtgtccgacaccgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcg 139  Q
    ||||| |||||||||| |||||||| ||| |||||||||||||      ||||||||| |||||| |||||||||||||||||    
T  21351889 gtgtcggacaccgacatgacaccgacacttgtaattacactga------attatgtgactttttccaattattagttgtgtcg 21351965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 73 - 164
Target Start/End: Complemental strand, 15382538 - 15382451
Alignment:
Q  73 cgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtcc 164  Q
    ||||||||| ||| ||||||| |||||||||    ||||   ||||||||||||||||| ||||||| ||||| |||||| |||||||||||    
T  15382538 cgacaccgacacttgtaattatactgaatta----tatgattttttttcaaattattagctgtgtcggcgtgtcattgtccgtgtcgtgtcc 15382451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 56 - 102
Target Start/End: Original strand, 37328827 - 37328873
Alignment:
Q  56 cgtgtccgacaccgacacgacaccgagactggtaattacactgaatt 102  Q
    |||||||||||||||||||||||||| ||  ||||||||||||||||    
T  37328827 cgtgtccgacaccgacacgacaccgacacatgtaattacactgaatt 37328873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 145
Target Start/End: Complemental strand, 6247681 - 6247615
Alignment:
Q  73 cgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcgacgtgt 145  Q
    ||||||||| ||| |||||||||||||||||      |||||||||||||||||||||| ||||||| |||||    
T  6247681 cgacaccgacacttgtaattacactgaatta------tgtgattttttcaaattattagatgtgtcggcgtgt 6247615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 166
Target Start/End: Original strand, 15405082 - 15405140
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtccat 166  Q
    ||||| |||||||||||||||||||||||||||   |||||| |||| |||||||||||||    
T  15405082 attatatgattttttcaaattattagttgtgtc--agtgttagtgtccgtgtcgtgtccat 15405140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 158
Target Start/End: Complemental strand, 14674301 - 14674249
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtc 158  Q
    |||||||||||||||||||||||||| ||||||| ||||| | |||| |||||    
T  14674301 attatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtc 14674249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 162
Target Start/End: Original strand, 19552570 - 19552626
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgt 162  Q
    |||||||||||||||||||||||||  ||||||| ||||| | |||| |||||||||    
T  19552570 attatgtgattttttcaaattattaactgtgtcggcgtgtcagtgtccgtgtcgtgt 19552626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 180
Target Start/End: Original strand, 6072340 - 6072415
Alignment:
Q  106 attatgtgatt-ttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtccatatccctgcttcata 180  Q
    ||||||||||| |||| |||||||||||| ||||| ||||| | | || || |||||||||||||| |||||||||    
T  6072340 attatgtgattgttttaaaattattagttatgtcggcgtgtcagtatccgtatcgtgtccatatccgtgcttcata 6072415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 139
Target Start/End: Original strand, 18316950 - 18316985
Alignment:
Q  104 atattatgtgattttttcaaattattagttgtgtcg 139  Q
    ||||||||||||||||| ||||||||||||||||||    
T  18316950 atattatgtgattttttaaaattattagttgtgtcg 18316985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 145
Target Start/End: Complemental strand, 31084355 - 31084316
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgt 145  Q
    |||||||||||||||||||||||||| ||||||| |||||    
T  31084355 attatgtgattttttcaaattattagctgtgtcggcgtgt 31084316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 145
Target Start/End: Complemental strand, 33178057 - 33178018
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgt 145  Q
    ||||||||||||||| |||||||||||||||||| |||||    
T  33178057 attatgtgatttttttaaattattagttgtgtcggcgtgt 33178018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 164
Target Start/End: Complemental strand, 22013446 - 22013388
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtcc 164  Q
    ||||||| |||||| ||||||||||| ||||||| ||||| | |||| |||||||||||    
T  22013446 attatgtaatttttccaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtcc 22013388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 164
Target Start/End: Complemental strand, 30135345 - 30135287
Alignment:
Q  107 ttatgtgatttttt-caaattattagttgtgtcgacgtgttattgtctgtgtcgtgtcc 164  Q
    |||||||||||||| ||||||||||||||||||| |||||   | ||||||||||||||    
T  30135345 ttatgtgatttttttcaaattattagttgtgtcggcgtgtcggtatctgtgtcgtgtcc 30135287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 164
Target Start/End: Original strand, 3751958 - 3752014
Alignment:
Q  107 ttatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtcc 164  Q
    |||||||||||| |||||||||||| ||||||||| ||||| |||  |||||||||||    
T  3751958 ttatgtgattttctcaaattattag-tgtgtcgacttgttagtgttcgtgtcgtgtcc 3752014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 135
Target Start/End: Complemental strand, 40131653 - 40131624
Alignment:
Q  106 attatgtgattttttcaaattattagttgt 135  Q
    ||||||||||||||||||||||||||||||    
T  40131653 attatgtgattttttcaaattattagttgt 40131624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 139
Target Start/End: Complemental strand, 42893392 - 42893359
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcg 139  Q
    |||||||||||||||||||||||||| |||||||    
T  42893392 attatgtgattttttcaaattattagctgtgtcg 42893359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 183
Target Start/End: Complemental strand, 2436954 - 2436876
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtc--gtgtccatatccctgcttcataggt 183  Q
    |||||||||||||| |||||||||||  |||||| ||||| | |||| |||||  |||||| ||||| ||||||||||||    
T  2436954 attatgtgatttttgcaaattattagcggtgtcggcgtgtcagtgtc-gtgtccggtgtccgtatccgtgcttcataggt 2436876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 5894860 - 5894892
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtc 138  Q
    ||||| |||||||||||||||||||||||||||    
T  5894860 attatatgattttttcaaattattagttgtgtc 5894892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 56 - 145
Target Start/End: Complemental strand, 14209189 - 14209106
Alignment:
Q  56 cgtgtccgacaccgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcgacgtgt 145  Q
    ||||||||||||||||||||||| || ||| |||||||||||||      ||||||||||||||| |||||||||||||||||| |||||    
T  14209189 cgtgtccgacaccgacacgacactgacacttgtaattacactga------attatgtgattttttaaaattattagttgtgtcggcgtgt 14209106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 106 - 183
Target Start/End: Complemental strand, 14979213 - 14979136
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtccatatccctgcttcataggt 183  Q
    |||||||||||||||||||||||||| ||||||| ||||  ||||||  |||||||||| ||||| ||||||||||||    
T  14979213 attatgtgattttttcaaattattagctgtgtcggcgtgccattgtccttgtcgtgtccgtatccgtgcttcataggt 14979136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 56 - 164
Target Start/End: Original strand, 41961633 - 41961735
Alignment:
Q  56 cgtgtccgacaccgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgt 155  Q
    ||||||||| |||||||||||||||| ||| |||||||||| |||| |      |||||| |||||||||||||||||||| || ||||| | |||||||    
T  41961633 cgtgtccgataccgacacgacaccgacacttgtaattacaccgaataa------tgtgatattttcaaattattagttgtgacggcgtgtcagtgtctgt 41961726  T
Q  156 gtcgtgtcc 164  Q
    |||||||||    
T  41961727 gtcgtgtcc 41961735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 57 - 164
Target Start/End: Original strand, 15796278 - 15796379
Alignment:
Q  57 gtgtccgacaccgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtg 156  Q
    |||||||||||| |||||||||||| | | |||||||||||||||||      | |||||||||||||||||||  ||||||| ||||| |||||| |||    
T  15796278 gtgtccgacacctacacgacaccgacaattgtaattacactgaatta------tatgattttttcaaattattaactgtgtcggcgtgtcattgtccgtg 15796371  T
Q  157 tcgtgtcc 164  Q
    ||||||||    
T  15796372 tcgtgtcc 15796379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 58 - 145
Target Start/End: Complemental strand, 34910391 - 34910310
Alignment:
Q  58 tgtccgacaccgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcgacgtgt 145  Q
    ||||||||||||| ||||||||||  || |||||||||||||||||      |||||||||||||||||||||||||||||| |||||    
T  34910391 tgtccgacaccgatacgacaccgactcttgtaattacactgaatta------tgtgattttttcaaattattagttgtgtcggcgtgt 34910310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 106 - 164
Target Start/End: Original strand, 3164052 - 3164110
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtcc 164  Q
    |||||||||||||||||||||||||| ||||||||||||  |||||| |||||||||||    
T  3164052 attatgtgattttttcaaattattagctgtgtcgacgtgccattgtccgtgtcgtgtcc 3164110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 163
Target Start/End: Complemental strand, 14216968 - 14216867
Alignment:
Q  56 cgtgtccgacaccgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgt 155  Q
    ||||||||||||  ||||||||| || ||| |||||||||||||||||      | |||| |||| |||||||||||||||||||||||| | |||| ||    
T  14216968 cgtgtccgacactaacacgacacggacacttgtaattacactgaatta------tatgatattttaaaattattagttgtgtcgacgtgtcagtgtccgt 14216875  T
Q  156 gtcgtgtc 163  Q
    ||||||||    
T  14216874 gtcgtgtc 14216867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 163
Target Start/End: Complemental strand, 14223097 - 14222996
Alignment:
Q  56 cgtgtccgacaccgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgt 155  Q
    ||||||||||||  ||||||||| || ||| |||||||||||||||||      | |||| |||| |||||||||||||||||||||||| | |||| ||    
T  14223097 cgtgtccgacactaacacgacacggacacttgtaattacactgaatta------tatgatattttaaaattattagttgtgtcgacgtgtcagtgtccgt 14223004  T
Q  156 gtcgtgtc 163  Q
    ||||||||    
T  14223003 gtcgtgtc 14222996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 145
Target Start/End: Original strand, 4987274 - 4987357
Alignment:
Q  56 cgtgtccgacaccgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcgacgtgt 145  Q
    ||||||| ||||||||||| |||| | ||| |||||||||||||||||      |||||||||||||||||||||| ||||||| |||||    
T  4987274 cgtgtccaacaccgacacgtcaccaacacttgtaattacactgaatta------tgtgattttttcaaattattagctgtgtcggcgtgt 4987357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 145
Target Start/End: Complemental strand, 28812591 - 28812508
Alignment:
Q  56 cgtgtccgacaccgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcgacgtgt 145  Q
    |||||| |||||| |||||||||||| ||| |||| ||||||||||||      |||||||| ||||||||||||||||||||| |||||    
T  28812591 cgtgtctgacaccaacacgacaccgacacttgtaactacactgaatta------tgtgatttcttcaaattattagttgtgtcggcgtgt 28812508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 164
Target Start/End: Complemental strand, 14829765 - 14829664
Alignment:
Q  56 cgtgtccgacaccgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgt 155  Q
    ||||||| |||||||||||||||||| ||| ||||||||  |||||||      |||||||||| ||||||||||| ||||||| ||||| | |||||||    
T  14829765 cgtgtccaacaccgacacgacaccgacacttgtaattaccatgaatta------tgtgattttt-caaattattagctgtgtcggcgtgtcagtgtctgt 14829673  T
Q  156 gtcgtgtcc 164  Q
    ||| |||||    
T  14829672 gtcatgtcc 14829664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 164
Target Start/End: Original strand, 10335315 - 10335371
Alignment:
Q  108 tatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtcc 164  Q
    ||||||| |||||||||||||||||||||||| ||||| | |||| |||||||||||    
T  10335315 tatgtgactttttcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtcc 10335371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 106 - 162
Target Start/End: Original strand, 16000043 - 16000099
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgt 162  Q
    ||||||| ||||||| |||||||||||||||||| ||||| | ||||||||||||||    
T  16000043 attatgttatttttttaaattattagttgtgtcggcgtgtcagtgtctgtgtcgtgt 16000099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 145
Target Start/End: Original strand, 750580 - 750684
Alignment:
Q  35 ctatgaagcacgggcactccacgtgtccgacaccgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttg 134  Q
    ||||||||||||| |||    ||||||||| |||||||||||||||| ||| |||||| ||  ||||||      |||||| ||||||||||||||||||    
T  750580 ctatgaagcacggacacgtgtcgtgtccgataccgacacgacaccgacacttgtaattgcagcgaatta------tgtgatattttcaaattattagttg 750673  T
Q  135 tgtcgacgtgt 145  Q
    ||||| |||||    
T  750674 tgtcgccgtgt 750684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 145
Target Start/End: Complemental strand, 10954984 - 10954945
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgt 145  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  10954984 attatgtgattttttcaaattattagttgtgtcggcgtgt 10954945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 181
Target Start/End: Complemental strand, 26508142 - 26508067
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtccatatccctgcttcatag 181  Q
    |||||||||||||||||||||||||| ||||||  ||||| | | ||||| |||||||| ||||| | ||||||||    
T  26508142 attatgtgattttttcaaattattagctgtgtcagcgtgtcagtatctgtatcgtgtccgtatccgttcttcatag 26508067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 57 - 138
Target Start/End: Complemental strand, 1509614 - 1509539
Alignment:
Q  57 gtgtccgacaccgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtc 138  Q
    ||||| |||||||| |||||||||| ||| ||||||||||| |||||      |||||||||||||||||||||| ||||||    
T  1509614 gtgtcggacaccgaaacgacaccgacacttgtaattacactaaatta------tgtgattttttcaaattattagctgtgtc 1509539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 164
Target Start/End: Complemental strand, 25064941 - 25064883
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtcc 164  Q
    |||||||||||||||||||| |||||  |||||| ||||| | ||||||||||||||||    
T  25064941 attatgtgattttttcaaatcattagcggtgtcggcgtgtcaatgtctgtgtcgtgtcc 25064883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 164
Target Start/End: Complemental strand, 28918062 - 28917975
Alignment:
Q  71 cacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtcc 164  Q
    ||||||||||| ||| |||||||||||||||||      |||||||||||||||||||||| | ||||| ||||| | | || |||||||||||    
T  28918062 cacgacaccgacacttgtaattacactgaatta------tgtgattttttcaaattattagctatgtcggcgtgtcagtttccgtgtcgtgtcc 28917975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 160
Target Start/End: Complemental strand, 55401107 - 55401053
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgt 160  Q
    |||||||||||||||||||||||||||||||||| ||| | | |||| |||||||    
T  55401107 attatgtgattttttcaaattattagttgtgtcggcgtatcagtgtccgtgtcgt 55401053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 181
Target Start/End: Original strand, 26492238 - 26492307
Alignment:
Q  112 tgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtccatatccctgcttcatag 181  Q
    |||||||||||||||||||| | ||||| ||||| | |||| ||||||||||| ||| | ||||||||||    
T  26492238 tgattttttcaaattattagctctgtcggcgtgtcagtgtccgtgtcgtgtccgtattcgtgcttcatag 26492307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 181
Target Start/End: Complemental strand, 40052364 - 40052295
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtccatatccctgcttcatag 181  Q
    |||||||||||||||||||||||||| ||||||| ||      |||| ||||||||||| ||||| ||||||||||    
T  40052364 attatgtgattttttcaaattattagctgtgtcggcg------tgtcagtgtcgtgtccgtatccgtgcttcatag 40052295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 164
Target Start/End: Original strand, 8587048 - 8587106
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtcc 164  Q
    |||||||||||||||||||||| ||| ||||||| ||||| | |||| ||||| |||||    
T  8587048 attatgtgattttttcaaattactagatgtgtcggcgtgtcagtgtccgtgtcatgtcc 8587106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 8039820 - 8039865
Alignment:
Q  58 tgtccgacaccgacacgacaccgagactggtaattacactgaatta 103  Q
    |||||||||||||||||||||||| ||   ||||||||||||||||    
T  8039820 tgtccgacaccgacacgacaccgacacatataattacactgaatta 8039865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 11493388 - 11493441
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcg 159  Q
    ||||||||||||| ||| ||||||||| |||||||||||| | |||| ||||||    
T  11493388 attatgtgattttctcacattattagtggtgtcgacgtgtcaatgtccgtgtcg 11493441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 21257013 - 21257045
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtc 138  Q
    |||||||||||||||||||||||||| ||||||    
T  21257013 attatgtgattttttcaaattattagctgtgtc 21257045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 34185108 - 34185152
Alignment:
Q  58 tgtccgacaccgacacgacaccgagactggtaattacactgaatt 102  Q
    |||||||||  ||||||||||||| ||| ||||||||||||||||    
T  34185108 tgtccgacatggacacgacaccgacacttgtaattacactgaatt 34185152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 51206380 - 51206412
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtc 138  Q
    |||||||||||||||||||||||||| ||||||    
T  51206380 attatgtgattttttcaaattattagctgtgtc 51206412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 56 - 163
Target Start/End: Complemental strand, 19482744 - 19482643
Alignment:
Q  56 cgtgtccgacaccgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgt 155  Q
    ||||||| | |||||||||||||| | ||| |||||||||| ||||||      |||||| ||||||||||||||||||||||| ||||| | |||||||    
T  19482744 cgtgtccaataccgacacgacaccaacacttgtaattacaccgaatta------tgtgatattttcaaattattagttgtgtcggcgtgtcagtgtctgt 19482651  T
Q  156 gtcgtgtc 163  Q
    ||||||||    
T  19482650 gtcgtgtc 19482643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 106 - 164
Target Start/End: Original strand, 23293013 - 23293071
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtcc 164  Q
    |||||||||||||||||||||||||| ||||||| ||||| |||||| |||||||||||    
T  23293013 attatgtgattttttcaaattattagctgtgtcggcgtgtcattgtccgtgtcgtgtcc 23293071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 145
Target Start/End: Original strand, 24613684 - 24613767
Alignment:
Q  56 cgtgtccgacaccgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcgacgtgt 145  Q
    |||||| |||||||||| |||||||| ||| ||| ||||| |||||||      ||||||||| ||||||||||||||||||||||||||    
T  24613684 cgtgtctgacaccgacatgacaccgacacttgtacttacattgaatta------tgtgattttctcaaattattagttgtgtcgacgtgt 24613767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 160
Target Start/End: Original strand, 12895301 - 12895355
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgt 160  Q
    ||||||||||||||||||||||||| |||||||| ||||| |||||  |||||||    
T  12895301 attatgtgattttttcaaattattatttgtgtcggcgtgtcattgttcgtgtcgt 12895355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 163
Target Start/End: Original strand, 11651161 - 11651218
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtc 163  Q
    ||||||||||||||| |||||||||| ||||||||||||| | |||| || |||||||    
T  11651161 attatgtgatttttttaaattattagctgtgtcgacgtgtcagtgtccgtatcgtgtc 11651218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 163
Target Start/End: Original strand, 27706204 - 27706261
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtc 163  Q
    ||||||||||||||| ||||||||| |||||||||||||| | ||||  |||||||||    
T  27706204 attatgtgatttttttaaattattaattgtgtcgacgtgtcagtgtccctgtcgtgtc 27706261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 145
Target Start/End: Complemental strand, 50280960 - 50280874
Alignment:
Q  54 cacgtgtccgacaccgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcgacgtgt 145  Q
    |||||||||||||| ||||||||||||  ||| ||||||||||  | |||  ||||||||| |||||||||||||||| ||||||| |||||    
T  50280960 cacgtgtccgacac-gacacgacaccggcacttgtaattacac--actta--attatgtgaatttttcaaattattagctgtgtcggcgtgt 50280874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 180
Target Start/End: Original strand, 12797338 - 12797438
Alignment:
Q  73 cgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtccatatccct 172  Q
    ||||||||| ||| |||||||||||||||||      ||||||||| |||||||||||||| || || ||||| | |||| ||||||| ||| ||||| |    
T  12797338 cgacaccgacacttgtaattacactgaatta------tgtgatttt-tcaaattattagttttgccggcgtgtcagtgtccgtgtcgtatccgtatccgt 12797430  T
Q  173 gcttcata 180  Q
    ||||||||    
T  12797431 gcttcata 12797438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 164
Target Start/End: Complemental strand, 21945562 - 21945477
Alignment:
Q  73 cgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtcc 164  Q
    ||||||||| ||| |||||||||||||||||      ||| |||||||||||||||||| ||||||| | ||| | |||||||||| |||||    
T  21945562 cgacaccgacacttgtaattacactgaatta------tgtcattttttcaaattattagctgtgtcggcatgtcagtgtctgtgtcatgtcc 21945477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 181
Target Start/End: Complemental strand, 49431058 - 49430982
Alignment:
Q  106 attatgtgatttttt-caaattattagttgtgtcgacgtgttattgtctgtgtcgtgtccatatccctgcttcatag 181  Q
    ||||||||||||||| ||||||||||| ||||||| ||||| | |||| | ||||||||| | ||| ||||||||||    
T  49431058 attatgtgatttttttcaaattattagctgtgtcggcgtgtcactgtccgagtcgtgtccgtgtccgtgcttcatag 49430982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 54580050 - 54580082
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtc 138  Q
    |||||||||||||||||||||||||||||||||    
T  54580050 attatgtgattttttcaaattattagttgtgtc 54580082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 163
Target Start/End: Original strand, 5832727 - 5832778
Alignment:
Q  112 tgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtc 163  Q
    ||||||| ||||||||||||  |||||||||||||| ||| |||||||||||    
T  5832727 tgattttctcaaattattagcagtgtcgacgtgttaatgtttgtgtcgtgtc 5832778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 165
Target Start/End: Original strand, 14126138 - 14126197
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtcca 165  Q
    ||||||||| ||| |||||||||||   |||||| ||||||| |||||||||||||||||    
T  14126138 attatgtgactttatcaaattattaacagtgtcggcgtgttagtgtctgtgtcgtgtcca 14126197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 164
Target Start/End: Original strand, 35158012 - 35158070
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtcc 164  Q
    |||||||||||||| |||||||||||||| |||| ||||| | |||| |||| ||||||    
T  35158012 attatgtgatttttccaaattattagttgcgtcggcgtgtcagtgtccgtgttgtgtcc 35158070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 164
Target Start/End: Complemental strand, 40481668 - 40481611
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtcc 164  Q
    |||||||||||||| ||||||||||||||| ||| ||||| | |||| |||||||||||    
T  40481668 attatgtgattttt-caaattattagttgtatcggcgtgtcagtgtcagtgtcgtgtcc 40481611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 100
Target Start/End: Original strand, 30982861 - 30982905
Alignment:
Q  56 cgtgtccgacaccgacacgacaccgagactggtaattacactgaa 100  Q
    |||||| ||||||||||||||||||| |||  |||||||||||||    
T  30982861 cgtgtctgacaccgacacgacaccgacacttataattacactgaa 30982905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 162
Target Start/End: Complemental strand, 47264018 - 47263962
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgt 162  Q
    |||||||||||||| ||||||||||| | ||||||||||| | | | ||||||||||    
T  47264018 attatgtgatttttacaaattattagctatgtcgacgtgtcaatatttgtgtcgtgt 47263962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 59 - 164
Target Start/End: Complemental strand, 15657937 - 15657838
Alignment:
Q  59 gtccgacaccgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtc 158  Q
    |||||||| | |||||||||||| | | |||||||||||||||||      |||||||||| |||||||||||||| |||| ||||||| |||| |||||    
T  15657937 gtccgacatcaacacgacaccgacatttgtaattacactgaatta------tgtgatttttacaaattattagttgagtcggcgtgttagtgtccgtgtc 15657844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 73 - 164
Target Start/End: Original strand, 19536397 - 19536483
Alignment:
Q  73 cgacaccgagactggtaattacactgaattaatattatgtgatttt-ttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtcc 164  Q
    ||||||||| ||| |||||||||||||||||      ||||||||| ||||||||||||||||||||| ||||| |||||| |||||||||||    
T  19536397 cgacaccgacacttgtaattacactgaatta------tgtgatttttttcaaattattagttgtgtcggcgtgtcattgtccgtgtcgtgtcc 19536483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 160
Target Start/End: Original strand, 36756328 - 36756425
Alignment:
Q  57 gtgtccgacaccgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtg 156  Q
    |||| ||||||  |||||||||||| |||  ||||||||||||||||      ||| |||| ||||||||||||||||||||||||||| | ||||||||    
T  36756328 gtgttcgacactaacacgacaccgacacttataattacactgaatta------tgttatttcttcaaattattagttgtgtcgacgtgtcagtgtctgtg 36756421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 106 - 165
Target Start/End: Original strand, 20539701 - 20539760
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtcca 165  Q
    ||||| |||||||||||||||||||| ||||||||||||| | |||| ||||||||||||    
T  20539701 attatatgattttttcaaattattagctgtgtcgacgtgtcagtgtccgtgtcgtgtcca 20539760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 163
Target Start/End: Original strand, 12940962 - 12941019
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtc 163  Q
    ||||| ||||||||||||||||||||||||||| |||||| | |||| ||||||||||    
T  12940962 attatatgattttttcaaattattagttgtgtcaacgtgtcagtgtccgtgtcgtgtc 12941019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 163
Target Start/End: Complemental strand, 30335449 - 30335392
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtc 163  Q
    ||||||| |||||||||||||||||||||||||| |||| || |||| ||||||||||    
T  30335449 attatgtcattttttcaaattattagttgtgtcggcgtgctagtgtccgtgtcgtgtc 30335392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 106 - 182
Target Start/End: Original strand, 18841040 - 18841116
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtccatatccctgcttcatagg 182  Q
    ||||||| |||||||||||||||||||||||||  ||||| | ||||  |||||||||| ||| | |||||||||||    
T  18841040 attatgtaattttttcaaattattagttgtgtcagcgtgtcagtgtccatgtcgtgtccgtatacgtgcttcatagg 18841116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 56 - 131
Target Start/End: Original strand, 30717513 - 30717582
Alignment:
Q  56 cgtgtccgacaccgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattag 131  Q
    ||||||||||| |||||||||| ||| ||| |||||||||||||      ||||||||||||||||||||||||||    
T  30717513 cgtgtccgacaacgacacgacatcgacacttgtaattacactga------attatgtgattttttcaaattattag 30717582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 181
Target Start/End: Original strand, 30404877 - 30404952
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtccatatccctgcttcatag 181  Q
    |||||||||||||||||||||||||   |||||| ||||| | |||| ||||| ||||| ||||| ||||||||||    
T  30404877 attatgtgattttttcaaattattaaccgtgtcggcgtgtcagtgtccgtgtcatgtccgtatccgtgcttcatag 30404952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 160
Target Start/End: Complemental strand, 11670787 - 11670733
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgt 160  Q
    ||||||||||||||||||||||||||| | |||||||||| | ||||| ||||||    
T  11670787 attatgtgattttttcaaattattagtggcgtcgacgtgtcagtgtctatgtcgt 11670733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 56 - 102
Target Start/End: Complemental strand, 37419819 - 37419773
Alignment:
Q  56 cgtgtccgacaccgacacgacaccgagactggtaattacactgaatt 102  Q
    |||||||||||||||||||||||||  ||| ||||||||||||||||    
T  37419819 cgtgtccgacaccgacacgacaccggcacttgtaattacactgaatt 37419773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 21374726 - 21374778
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtc 158  Q
    ||||||| |||||||||||||||||| ||||||| ||||||| |||| |||||    
T  21374726 attatgtaattttttcaaattattagctgtgtcggcgtgttagtgtccgtgtc 21374778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 103
Target Start/End: Original strand, 4882679 - 4882726
Alignment:
Q  56 cgtgtccgacaccgacacgacaccgagactggtaattacactgaatta 103  Q
    |||||| ||||||||||||||| ||| ||| |||||||||||||||||    
T  4882679 cgtgtctgacaccgacacgacatcgacacttgtaattacactgaatta 4882726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 103
Target Start/End: Original strand, 11223846 - 11223893
Alignment:
Q  56 cgtgtccgacaccgacacgacaccgagactggtaattacactgaatta 103  Q
    ||||||||||||| ||| |||||||| ||| |||||||||||||||||    
T  11223846 cgtgtccgacacctacatgacaccgacacttgtaattacactgaatta 11223893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 165
Target Start/End: Original strand, 21782845 - 21782904
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtcca 165  Q
    ||||||||||||| ||||||||||||  |||||| ||||| | ||| |||||||||||||    
T  21782845 attatgtgattttctcaaattattagcagtgtcggcgtgtcagtgtttgtgtcgtgtcca 21782904  T

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Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 103
Target Start/End: Complemental strand, 35056944 - 35056897
Alignment:
Q  56 cgtgtccgacaccgacacgacaccgagactggtaattacactgaatta 103  Q
    |||||||||||||||||||||||||| ||   ||||||||||||||||    
T  35056944 cgtgtccgacaccgacacgacaccgacacatataattacactgaatta 35056897  T

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Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 180
Target Start/End: Original strand, 38117188 - 38117261
Alignment:
Q  108 tatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtc--gtgtccatatccctgcttcata 180  Q
    |||||||||||||||||||||||| ||||||| ||||| | |||| |||||  |||||| ||||| |||||||||    
T  38117188 tatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtc-gtgtccggtgtccgtatccgtgcttcata 38117261  T

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Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 145
Target Start/End: Complemental strand, 26769587 - 26769504
Alignment:
Q  56 cgtgtccgacaccgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcgacgtgt 145  Q
    ||||||||| ||||||| |||||||| ||| ||||||||||       | || ||||||| ||||||||||||||||||||||| |||||    
T  26769587 cgtgtccgataccgacatgacaccgacacttgtaattacacc------agataatgtgatattttcaaattattagttgtgtcggcgtgt 26769504  T

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Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 163
Target Start/End: Complemental strand, 28412382 - 28412325
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtc 163  Q
    ||||||||||||| |||||||||||   |||| ||||||||| |||| ||||||||||    
T  28412382 attatgtgattttatcaaattattaacggtgttgacgtgttagtgtccgtgtcgtgtc 28412325  T

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Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 162
Target Start/End: Complemental strand, 15349872 - 15349816
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgt 162  Q
    ||||||||||||||| |||||| ||   || ||||||||| ||||||||||||||||    
T  15349872 attatgtgatttttttaaattactaacagtatcgacgtgtcattgtctgtgtcgtgt 15349816  T

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Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 158
Target Start/End: Complemental strand, 37559009 - 37558957
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtc 158  Q
    |||||||||||||| ||||||||||| ||||||| ||||| | |||| |||||    
T  37559009 attatgtgatttttacaaattattagctgtgtcggcgtgtcagtgtccgtgtc 37558957  T

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Target: scaffold0003 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 56 - 164
Target Start/End: Complemental strand, 241670 - 241568
Alignment:
Q  56 cgtgtccgacaccgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgt 155  Q
    ||||||||||||| |||||||||||| |||  |||||||||| |||||      |||||||||| ||||||||||| ||||||| ||||| | |||| ||    
T  241670 cgtgtccgacaccaacacgacaccgacactcataattacactaaatta------tgtgatttttccaaattattagctgtgtcggcgtgtcagtgtccgt 241577  T
Q  156 gtcgtgtcc 164  Q
    |||||||||    
T  241576 gtcgtgtcc 241568  T

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Target: scaffold0027 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 164
Target Start/End: Complemental strand, 46714 - 46656
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtcc 164  Q
    |||||||||||||||||||||||||  ||||||| ||||| |||||| |||||||||||    
T  46714 attatgtgattttttcaaattattaactgtgtcggcgtgtcattgtccgtgtcgtgtcc 46656  T

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Target: scaffold0011 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 152
Target Start/End: Original strand, 17776 - 17822
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtc 152  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||    
T  17776 attatgtgattttttcaaattattagttgtgtcagcgtgttattgtc 17822  T

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Target: scaffold0085 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 106 - 158
Target Start/End: Complemental strand, 26425 - 26373
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtc 158  Q
    ||||||||||||| ||||||||||||| |||||||||||| | ||||||||||    
T  26425 attatgtgattttctcaaattattagtggtgtcgacgtgtcactgtctgtgtc 26373  T

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Target: scaffold0018 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 112 - 164
Target Start/End: Original strand, 178852 - 178904
Alignment:
Q  112 tgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtcc 164  Q
    |||||||||||||||||||||||||||| ||||| | |||| |||||||||||    
T  178852 tgattttttcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtcc 178904  T

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Target: scaffold0361 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 145
Target Start/End: Complemental strand, 14562 - 14523
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgt 145  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  14562 attatgtgattttttcaaattattagttgtgtcggcgtgt 14523  T

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Target: scaffold0103 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 179
Target Start/End: Complemental strand, 51843 - 51769
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgt-cgtgtccatatccctgcttcat 179  Q
    |||||||||||||||||||||||||| ||||||| ||||| | |||| |||| ||| ||||||||  ||||||||    
T  51843 attatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtccgtatccatatctgtgcttcat 51769  T

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Target: scaffold0019 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 71800 - 71755
Alignment:
Q  57 gtgtccgacaccgacacgacaccgagactggtaattacactgaatt 102  Q
    |||||||||||||||||||||| || ||| ||||||||||||||||    
T  71800 gtgtccgacaccgacacgacactgacactagtaattacactgaatt 71755  T

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Target: scaffold0450 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 139
Target Start/End: Original strand, 8618 - 8695
Alignment:
Q  56 cgtgtccgacaccgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcg 139  Q
    ||||||||| |||||||||||||||| | | ||||||| || ||||||      |||||| |||||||||||||||||||||||    
T  8618 cgtgtccgataccgacacgacaccgacatttgtaattataccgaatta------tgtgatattttcaaattattagttgtgtcg 8695  T

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Target: scaffold0306 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 158
Target Start/End: Complemental strand, 13432 - 13380
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtc 158  Q
    ||||||||||||| |||||||||||||||||||| ||||| | |||| |||||    
T  13432 attatgtgattttctcaaattattagttgtgtcggcgtgtcagtgtccgtgtc 13380  T

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Target: scaffold0152 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 21895 - 21947
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtc 158  Q
    ||||||||||||| |||||||||||||||||||| ||||| | |||| |||||    
T  21895 attatgtgattttctcaaattattagttgtgtcggcgtgtcagtgtccgtgtc 21947  T

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Target: scaffold0136 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 163
Target Start/End: Original strand, 3832 - 3933
Alignment:
Q  56 cgtgtccgacaccgacacgacaccgagactggtaattacactgaattaatattatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgt 155  Q
    ||||||||||||| ||||||||| || ||| |||||||||||||      ||||||||||||||| |||||||||   |||||| | | | | |||||||    
T  3832 cgtgtccgacaccaacacgacactgacacttgtaattacactga------attatgtgatttttttaaattattaaccgtgtcggcatatcagtgtctgt 3925  T
Q  156 gtcgtgtc 163  Q
    ||||||||    
T  3926 gtcgtgtc 3933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 145
Target Start/End: Complemental strand, 8043 - 8003
Alignment:
Q  105 tattatgtgattttttcaaattattagttgtgtcgacgtgt 145  Q
    |||||| |||||||||||||||||||||||||||| |||||    
T  8043 tattatatgattttttcaaattattagttgtgtcggcgtgt 8003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 164
Target Start/End: Complemental strand, 8824 - 8772
Alignment:
Q  112 tgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtcc 164  Q
    |||||||||||||||||||| ||||||| ||||| | |||| |||||||||||    
T  8824 tgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtcc 8772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 145
Target Start/End: Original strand, 7338 - 7377
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgt 145  Q
    |||||||||||||| ||||||||||||||||||| |||||    
T  7338 attatgtgatttttccaaattattagttgtgtcggcgtgt 7377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 164
Target Start/End: Complemental strand, 19607 - 19550
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtcc 164  Q
    |||||||||||||| ||||||||||||||| ||| ||||| | |||| |||||||||||    
T  19607 attatgtgattttt-caaattattagttgtatcggcgtgtcagtgtcagtgtcgtgtcc 19550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 164
Target Start/End: Complemental strand, 130514 - 130456
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgtgttattgtctgtgtcgtgtcc 164  Q
    ||||||||||||||||||| |||||  ||||||| | ||| |||||| |||||||||||    
T  130514 attatgtgattttttcaaactattaactgtgtcggcttgtcattgtccgtgtcgtgtcc 130456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0722 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0722
Description:

Target: scaffold0722; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 143
Target Start/End: Original strand, 7059 - 7096
Alignment:
Q  106 attatgtgattttttcaaattattagttgtgtcgacgt 143  Q
    ||||||| |||||||||||||||||| |||||||||||    
T  7059 attatgtaattttttcaaattattagctgtgtcgacgt 7096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 53254 - 53209
Alignment:
Q  58 tgtccgacaccgacacgacaccgagactggtaattacactgaatta 103  Q
    ||||||||||||||||| |||||| |||  ||||||||||||||||    
T  53254 tgtccgacaccgacacggcaccgacacttataattacactgaatta 53209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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